Wall clock time and date at job start Tue Mar 31 2020 10:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36360 * 120.08094 * 2 1 4 4 C 1.39523 * 120.16601 * 179.97438 * 3 2 1 5 5 N 1.39021 * 119.84044 * 180.02562 * 4 3 2 6 6 C 1.37947 * 119.99844 * 33.54309 * 5 4 3 7 7 N 1.30272 * 120.00184 * 4.48454 * 6 5 4 8 8 C 1.48009 * 119.99734 * 184.48315 * 6 5 4 9 9 C 1.39881 * 120.55619 * 235.46016 * 8 6 5 10 10 C 1.38391 * 118.31218 * 179.76037 * 9 8 6 11 11 C 1.38323 * 119.32952 * 0.54277 * 10 9 8 12 12 N 1.31908 * 121.07695 * 359.69523 * 11 10 9 13 13 C 1.31831 * 121.85338 * 0.02587 * 12 11 10 14 14 Cl 1.73598 * 119.73273 * 180.02562 * 13 12 11 15 15 C 1.39564 * 120.31959 * 0.02614 * 4 3 2 16 16 C 1.36328 * 120.16291 * 359.95217 * 15 4 3 17 17 C 1.40862 * 120.08517 * 179.97438 * 2 1 3 18 18 C 1.41130 * 120.15976 * 359.74663 * 17 2 1 19 19 H 1.08008 * 119.99761 * 325.69910 * 18 17 2 20 20 C 1.39880 * 120.00105 * 145.70093 * 18 17 2 21 21 N 1.30893 * 120.00172 * 2.78802 * 20 18 17 22 22 Si 1.86796 * 120.00075 * 182.78505 * 20 18 17 23 23 H 1.48504 * 109.47124 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47258 * 119.99890 * 22 20 18 25 25 H 1.48507 * 109.47216 * 239.99780 * 22 20 18 26 26 H 1.08998 * 109.47209 * 270.01832 * 1 2 3 27 27 H 1.08997 * 109.47461 * 30.02190 * 1 2 3 28 28 H 1.09000 * 109.46744 * 150.01841 * 1 2 3 29 29 H 1.08001 * 119.91849 * 359.96018 * 3 2 1 30 30 H 0.96999 * 120.00331 * 213.54229 * 5 4 3 31 31 H 0.96997 * 120.00394 * 175.00930 * 7 6 5 32 32 H 1.07997 * 120.84314 * 0.02562 * 9 8 6 33 33 H 1.08001 * 120.33517 * 180.23715 * 10 9 8 34 34 H 1.07995 * 119.45890 * 179.72137 * 11 10 9 35 35 H 1.08003 * 119.91455 * 179.97438 * 15 4 3 36 36 H 1.07995 * 120.07933 * 180.02562 * 16 15 4 37 37 H 0.96999 * 120.00137 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5857 1.1820 0.0005 5 7 4.2757 2.3889 0.0011 6 6 3.7533 3.4817 0.6613 7 7 2.6585 3.3605 1.3568 8 6 4.4367 4.7920 0.5794 9 6 4.8200 5.4681 1.7424 10 6 5.4606 6.6878 1.6117 11 6 5.6895 7.2009 0.3477 12 7 5.3127 6.5440 -0.7323 13 6 4.7044 5.3766 -0.6598 14 17 4.2329 4.5595 -2.1170 15 6 4.2921 -0.0217 0.0005 16 6 3.6221 -1.2090 0.0010 17 6 2.2131 -1.2189 0.0005 18 6 1.5127 -2.4441 0.0065 19 1 0.5759 -2.5280 0.5374 20 6 2.0318 -3.5498 -0.6752 21 7 3.1932 -3.4641 -1.2727 22 14 1.0676 -5.1486 -0.7327 23 1 -0.2049 -4.9864 0.0156 24 1 0.7707 -5.4971 -2.1454 25 1 1.8706 -6.2335 -0.1135 26 1 -0.3633 0.0003 1.0276 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6505 2.1153 -0.0007 30 1 5.1244 2.4627 -0.4627 31 1 2.3304 4.1089 1.8794 32 1 4.6249 5.0468 2.7175 33 1 5.7742 7.2359 2.4879 34 1 6.1852 8.1547 0.2434 35 1 5.3720 -0.0124 0.0005 36 1 4.1701 -2.1396 0.0014 37 1 3.5530 -4.2308 -1.7458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171352155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:17 Heat of formation + Delta-G solvation = 78.249544 kcal Electronic energy + Delta-G solvation = -22587.574739 eV Core-core repulsion = 19162.695378 eV Total energy + Delta-G solvation = -3424.879360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61991 -38.50088 -36.82215 -36.53962 -33.84118 -32.83794 -32.15476 -30.96521 -30.58440 -28.67811 -26.04746 -25.08229 -23.90851 -23.79526 -21.43270 -19.93943 -19.71084 -17.92911 -17.13840 -17.02830 -16.86792 -15.74226 -15.14414 -14.99705 -14.66409 -14.43358 -13.85628 -13.68402 -13.62996 -12.90419 -12.62261 -12.45623 -12.06712 -11.93043 -11.71064 -11.43792 -11.30446 -11.24175 -11.07615 -10.87309 -10.59710 -10.47109 -10.27533 -10.03640 -9.69619 -9.49471 -9.27616 -9.07628 -8.67798 -8.18687 -7.22628 -6.58550 -6.53084 -4.20011 0.39475 0.71646 1.60770 2.52569 2.96106 3.14233 3.17209 3.19923 3.23812 3.36398 3.70019 4.04435 4.13453 4.38877 4.48595 4.59684 4.79571 4.81006 5.04520 5.48404 5.60432 5.72137 5.98202 6.04404 6.29704 6.46676 6.62697 6.80994 6.82405 7.00369 7.19856 7.25150 7.30786 7.37479 7.58059 7.75897 7.82473 8.12801 8.21099 8.37162 8.44557 8.74200 8.87621 9.04513 9.12652 10.38551 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.003091 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.869059 B = 9056.392819 C = 9227.384619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.178 4.178 3 C -0.073 4.073 4 C 0.034 3.966 5 N -0.629 5.629 6 C 0.447 3.553 7 N -0.735 5.735 8 C -0.135 4.135 9 C -0.040 4.040 10 C -0.169 4.169 11 C 0.122 3.878 12 N -0.477 5.477 13 C 0.191 3.809 14 Cl -0.006 7.006 15 C -0.132 4.132 16 C -0.138 4.138 17 C 0.100 3.900 18 C -0.456 4.456 19 H 0.075 0.925 20 C 0.070 3.930 21 N -0.815 5.815 22 Si 0.910 3.090 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.400 0.600 31 H 0.332 0.668 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.168 0.832 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 16.736 3.455 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.180 4.180 3 C -0.094 4.094 4 C -0.058 4.058 5 N -0.258 5.258 6 C 0.164 3.836 7 N -0.365 5.365 8 C -0.143 4.143 9 C -0.067 4.067 10 C -0.189 4.189 11 C -0.036 4.036 12 N -0.188 5.188 13 C 0.025 3.975 14 Cl 0.023 6.977 15 C -0.153 4.153 16 C -0.158 4.158 17 C 0.097 3.903 18 C -0.488 4.488 19 H 0.094 0.906 20 C -0.145 4.145 21 N -0.443 5.443 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.234 0.766 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.185 0.815 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.113 16.013 2.538 17.000 hybrid contribution 0.264 -0.014 0.472 0.541 sum 5.377 15.999 3.009 17.145 Atomic orbital electron populations 1.20375 0.93594 1.00299 0.99626 1.19529 0.94464 0.92906 1.11052 1.20151 0.91924 0.97073 1.00262 1.17128 0.91110 0.82678 1.14929 1.41432 1.23227 1.07423 1.53695 1.19542 0.89796 0.83691 0.90591 1.69775 1.13373 1.36472 1.16914 1.20822 1.02551 0.98134 0.92814 1.21716 0.93296 0.93667 0.98041 1.22186 1.00527 0.96610 0.99612 1.22827 0.95009 0.98783 0.86934 1.67075 1.10810 1.06842 1.34075 1.21963 0.95866 0.91662 0.88022 1.98473 1.89117 1.75186 1.34970 1.20283 0.97120 0.92145 1.05734 1.21095 0.94776 0.96190 1.03694 1.17539 0.91702 0.91734 0.89316 1.19469 1.06487 0.94207 1.28613 0.90637 1.25841 0.94693 0.99945 0.93976 1.69794 1.16307 1.31139 1.27043 0.86232 0.80458 0.81194 0.78574 1.18650 1.20141 1.20142 0.94046 0.94563 0.92126 0.87174 0.76576 0.85233 0.83420 0.83494 0.81524 0.89526 0.85391 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.42 36.01 0.34 -1.44 16 2 C -0.18 -4.38 5.90 -104.31 -0.62 -4.99 16 3 C -0.07 -1.70 8.14 -39.78 -0.32 -2.03 16 4 C 0.03 0.75 6.30 -83.63 -0.53 0.22 16 5 N -0.63 -11.09 4.63 -8.19 -0.04 -11.13 16 6 C 0.45 7.15 6.42 -154.15 -0.99 6.16 16 7 N -0.73 -12.75 10.75 32.55 0.35 -12.40 16 8 C -0.13 -1.72 5.58 -104.77 -0.58 -2.30 16 9 C -0.04 -0.38 9.82 -38.91 -0.38 -0.76 16 10 C -0.17 -1.22 10.10 -39.49 -0.40 -1.62 16 11 C 0.12 1.01 11.17 -17.49 -0.20 0.82 16 12 N -0.48 -5.68 10.33 -10.05 -0.10 -5.78 16 13 C 0.19 2.51 7.31 -17.04 -0.12 2.39 16 14 Cl -0.01 -0.09 27.23 -51.86 -1.41 -1.50 16 15 C -0.13 -3.04 9.89 -39.78 -0.39 -3.43 16 16 C -0.14 -3.55 8.61 -39.26 -0.34 -3.89 16 17 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 18 C -0.46 -12.10 7.88 -37.87 -0.30 -12.39 16 19 H 0.08 1.95 7.21 -52.48 -0.38 1.57 16 20 C 0.07 1.77 5.41 -17.34 -0.09 1.67 16 21 N -0.81 -21.26 10.63 55.54 0.59 -20.67 16 22 Si 0.91 19.17 29.56 -169.99 -5.02 14.15 16 23 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.06 1.33 6.93 -51.93 -0.36 0.97 16 29 H 0.11 2.49 6.24 -52.49 -0.33 2.17 16 30 H 0.40 6.26 8.48 -40.82 -0.35 5.92 16 31 H 0.33 4.90 8.67 -40.82 -0.35 4.54 16 32 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.13 3.44 6.16 -52.49 -0.32 3.12 16 37 H 0.27 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -29.82 332.39 -9.90 -39.72 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -3.76 Total: 12.15 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -5.52 Total: -19.55 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.80 Total: -49.98 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.41 Total: -1.50 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.82 -9.90 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171352155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.973 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds