Wall clock time and date at job start Tue Mar 31 2020 10:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36360 * 120.08094 * 2 1 4 4 C 1.39523 * 120.16601 * 179.97438 * 3 2 1 5 5 N 1.39021 * 119.84044 * 180.02562 * 4 3 2 6 6 C 1.37947 * 119.99844 * 33.54309 * 5 4 3 7 7 N 1.30272 * 120.00184 * 4.48454 * 6 5 4 8 8 C 1.48009 * 119.99734 * 184.48315 * 6 5 4 9 9 C 1.39881 * 120.55619 * 235.46016 * 8 6 5 10 10 C 1.38391 * 118.31218 * 179.76037 * 9 8 6 11 11 C 1.38323 * 119.32952 * 0.54277 * 10 9 8 12 12 N 1.31908 * 121.07695 * 359.69523 * 11 10 9 13 13 C 1.31831 * 121.85338 * 0.02587 * 12 11 10 14 14 Cl 1.73598 * 119.73273 * 180.02562 * 13 12 11 15 15 C 1.39564 * 120.31959 * 0.02614 * 4 3 2 16 16 C 1.36328 * 120.16291 * 359.95217 * 15 4 3 17 17 C 1.40862 * 120.08517 * 179.97438 * 2 1 3 18 18 C 1.41130 * 120.15976 * 359.74663 * 17 2 1 19 19 H 1.08008 * 119.99761 * 325.69910 * 18 17 2 20 20 C 1.39880 * 120.00105 * 145.70093 * 18 17 2 21 21 N 1.30893 * 120.00172 * 2.78802 * 20 18 17 22 22 Si 1.86796 * 120.00075 * 182.78505 * 20 18 17 23 23 H 1.48504 * 109.47124 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47258 * 119.99890 * 22 20 18 25 25 H 1.48507 * 109.47216 * 239.99780 * 22 20 18 26 26 H 1.08998 * 109.47209 * 270.01832 * 1 2 3 27 27 H 1.08997 * 109.47461 * 30.02190 * 1 2 3 28 28 H 1.09000 * 109.46744 * 150.01841 * 1 2 3 29 29 H 1.08001 * 119.91849 * 359.96018 * 3 2 1 30 30 H 0.96999 * 120.00331 * 213.54229 * 5 4 3 31 31 H 0.96997 * 120.00394 * 175.00930 * 7 6 5 32 32 H 1.07997 * 120.84314 * 0.02562 * 9 8 6 33 33 H 1.08001 * 120.33517 * 180.23715 * 10 9 8 34 34 H 1.07995 * 119.45890 * 179.72137 * 11 10 9 35 35 H 1.08003 * 119.91455 * 179.97438 * 15 4 3 36 36 H 1.07995 * 120.07933 * 180.02562 * 16 15 4 37 37 H 0.96999 * 120.00137 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5857 1.1820 0.0005 5 7 4.2757 2.3889 0.0011 6 6 3.7533 3.4817 0.6613 7 7 2.6585 3.3605 1.3568 8 6 4.4367 4.7920 0.5794 9 6 4.8200 5.4681 1.7424 10 6 5.4606 6.6878 1.6117 11 6 5.6895 7.2009 0.3477 12 7 5.3127 6.5440 -0.7323 13 6 4.7044 5.3766 -0.6598 14 17 4.2329 4.5595 -2.1170 15 6 4.2921 -0.0217 0.0005 16 6 3.6221 -1.2090 0.0010 17 6 2.2131 -1.2189 0.0005 18 6 1.5127 -2.4441 0.0065 19 1 0.5759 -2.5280 0.5374 20 6 2.0318 -3.5498 -0.6752 21 7 3.1932 -3.4641 -1.2727 22 14 1.0676 -5.1486 -0.7327 23 1 -0.2049 -4.9864 0.0156 24 1 0.7707 -5.4971 -2.1454 25 1 1.8706 -6.2335 -0.1135 26 1 -0.3633 0.0003 1.0276 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6505 2.1153 -0.0007 30 1 5.1244 2.4627 -0.4627 31 1 2.3304 4.1089 1.8794 32 1 4.6249 5.0468 2.7175 33 1 5.7742 7.2359 2.4879 34 1 6.1852 8.1547 0.2434 35 1 5.3720 -0.0124 0.0005 36 1 4.1701 -2.1396 0.0014 37 1 3.5530 -4.2308 -1.7458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171352155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:16 Heat of formation + Delta-G solvation = 61.640382 kcal Electronic energy + Delta-G solvation = -22588.294966 eV Core-core repulsion = 19162.695378 eV Total energy + Delta-G solvation = -3425.599587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47847 -40.13274 -38.11996 -37.73621 -35.45102 -34.32353 -33.26526 -32.39430 -31.80350 -30.46462 -27.84618 -26.58426 -25.15797 -24.59038 -23.06851 -21.65617 -21.21419 -18.99942 -18.89952 -18.06432 -17.83753 -17.25712 -16.74502 -16.23132 -15.65801 -15.62075 -15.39667 -15.33040 -14.47952 -14.40729 -14.28381 -13.80420 -13.55479 -13.37129 -13.11858 -13.03889 -12.87031 -12.81415 -12.61994 -12.37771 -12.25593 -12.04413 -11.57098 -11.35359 -11.15888 -10.95904 -10.88518 -10.29712 -9.91379 -9.75279 -9.10139 -8.40731 -8.36254 -6.15380 -0.42165 -0.02970 0.68694 0.93103 1.28431 1.41758 1.44139 1.55731 1.76496 2.28647 2.30038 2.55789 2.91317 3.26771 3.51198 3.72441 3.81013 3.84800 4.14546 4.35707 4.48753 4.52699 4.70486 4.81622 4.84306 4.95691 5.03299 5.07083 5.23717 5.31622 5.39176 5.49746 5.55345 5.83309 5.92529 6.00590 6.24717 6.49949 6.55178 6.59494 6.67787 6.85187 7.10840 7.20687 7.60227 8.52871 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.003091 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.869059 B = 9056.392819 C = 9227.384619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.190 4.190 3 C -0.085 4.085 4 C 0.058 3.942 5 N -0.632 5.632 6 C 0.455 3.545 7 N -0.764 5.764 8 C -0.151 4.151 9 C -0.039 4.039 10 C -0.146 4.146 11 C 0.126 3.874 12 N -0.500 5.500 13 C 0.178 3.822 14 Cl -0.033 7.033 15 C -0.141 4.141 16 C -0.157 4.157 17 C 0.063 3.937 18 C -0.487 4.487 19 H 0.072 0.928 20 C 0.027 3.973 21 N -0.847 5.847 22 Si 0.980 3.020 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.268 1.268 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.409 0.591 31 H 0.346 0.654 32 H 0.163 0.837 33 H 0.193 0.807 34 H 0.207 0.793 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 19.311 4.727 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.192 4.192 3 C -0.105 4.105 4 C -0.036 4.036 5 N -0.262 5.262 6 C 0.172 3.828 7 N -0.395 5.395 8 C -0.160 4.160 9 C -0.066 4.066 10 C -0.165 4.165 11 C -0.031 4.031 12 N -0.211 5.211 13 C 0.012 3.988 14 Cl -0.004 7.004 15 C -0.162 4.162 16 C -0.177 4.177 17 C 0.061 3.939 18 C -0.518 4.518 19 H 0.090 0.910 20 C -0.184 4.184 21 N -0.476 5.476 22 Si 0.802 3.198 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.193 1.193 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.246 0.754 31 H 0.162 0.838 32 H 0.181 0.819 33 H 0.210 0.790 34 H 0.223 0.777 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.852 18.634 3.823 19.902 hybrid contribution 0.171 -0.462 0.181 0.525 sum 6.023 18.172 4.004 19.559 Atomic orbital electron populations 1.20338 0.91913 1.00737 1.00327 1.19925 0.96071 0.92849 1.10352 1.20295 0.92632 0.96820 1.00795 1.17163 0.90955 0.84016 1.11493 1.41347 1.23540 1.06721 1.54599 1.19678 0.89512 0.84286 0.89280 1.69655 1.14112 1.38164 1.17568 1.20535 1.04614 0.96823 0.93999 1.22011 0.92847 0.94318 0.97436 1.22657 0.97853 0.95223 1.00769 1.23624 0.93452 0.99494 0.86487 1.67086 1.11464 1.06624 1.35963 1.21860 0.97237 0.92535 0.87142 1.98458 1.89540 1.75879 1.36559 1.20464 0.98306 0.91811 1.05576 1.21041 0.94896 0.96521 1.05280 1.17847 0.92315 0.92702 0.91037 1.19620 1.06851 0.95263 1.30072 0.91031 1.26645 0.95570 1.02972 0.93216 1.69878 1.17636 1.32252 1.27845 0.85176 0.79010 0.76930 0.78646 1.18331 1.19609 1.19345 0.93112 0.92788 0.92897 0.86546 0.75415 0.83751 0.81927 0.78992 0.77658 0.87342 0.87257 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.35 9.42 71.24 0.67 -2.67 16 2 C -0.19 -9.59 5.90 -19.66 -0.12 -9.70 16 3 C -0.08 -3.96 8.14 22.14 0.18 -3.78 16 4 C 0.06 2.54 6.30 38.63 0.24 2.78 16 5 N -0.63 -21.97 4.63 -179.82 -0.83 -22.80 16 6 C 0.46 14.08 6.42 136.42 0.88 14.96 16 7 N -0.76 -25.72 10.75 -50.94 -0.55 -26.27 16 8 C -0.15 -3.57 5.58 -19.96 -0.11 -3.68 16 9 C -0.04 -0.61 9.82 22.70 0.22 -0.38 16 10 C -0.15 -1.35 10.10 22.33 0.23 -1.12 16 11 C 0.13 1.54 11.17 84.70 0.95 2.48 16 12 N -0.50 -10.65 10.33 -185.70 -1.92 -12.57 16 13 C 0.18 4.41 7.31 85.02 0.62 5.03 16 14 Cl -0.03 -0.93 27.23 -2.72 -0.07 -1.01 16 15 C -0.14 -6.60 9.89 22.14 0.22 -6.38 16 16 C -0.16 -8.46 8.61 22.48 0.19 -8.26 16 17 C 0.06 3.50 5.55 -21.27 -0.12 3.38 16 18 C -0.49 -26.78 7.88 23.38 0.18 -26.60 16 19 H 0.07 3.83 7.21 -2.91 -0.02 3.81 16 20 C 0.03 1.39 5.41 85.23 0.46 1.85 16 21 N -0.85 -45.81 10.63 21.82 0.23 -45.58 16 22 Si 0.98 40.16 29.56 68.60 2.03 42.19 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 28 H 0.05 2.36 6.93 -2.39 -0.02 2.35 16 29 H 0.12 5.26 6.24 -2.91 -0.02 5.24 16 30 H 0.41 12.64 8.48 -92.71 -0.79 11.85 16 31 H 0.35 9.71 8.67 -92.71 -0.80 8.91 16 32 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 34 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 35 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.11 6.21 6.16 -2.91 -0.02 6.19 16 37 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 Total: -1.00 -67.97 332.39 3.14 -64.83 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.44 Total: 33.31 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 4.70 Total: -32.09 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -3.07 Total: -107.22 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.07 Total: -1.01 kcal Total: -67.97 3.14 -64.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171352155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.467 kcal (2) G-P(sol) polarization free energy of solvation -67.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds