Wall clock time and date at job start Tue Mar 31 2020 10:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36357 * 119.92247 * 2 1 4 4 C 1.40866 * 119.83629 * 179.97438 * 3 2 1 5 5 C 1.41134 * 120.16147 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99649 * 324.13206 * 5 4 3 7 7 C 1.39888 * 120.00004 * 144.12453 * 5 4 3 8 8 N 1.30887 * 119.99418 * 169.65837 * 7 5 4 9 9 Si 1.86798 * 120.00116 * 349.66011 * 7 5 4 10 10 H 1.48501 * 109.47267 * 87.17400 * 9 7 5 11 11 H 1.48500 * 109.46986 * 207.17700 * 9 7 5 12 12 H 1.48508 * 109.47072 * 327.17423 * 9 7 5 13 13 C 1.40907 * 119.68405 * 0.02562 * 4 3 2 14 14 C 1.36324 * 119.83179 * 359.72540 * 13 4 3 15 15 C 1.39529 * 119.91859 * 179.97438 * 2 1 3 16 16 N 1.39033 * 119.83467 * 0.02562 * 15 2 1 17 17 C 1.37939 * 119.99511 * 156.77684 * 16 15 2 18 18 N 1.30275 * 120.00042 * 143.57279 * 17 16 15 19 19 C 1.48003 * 119.99965 * 323.56499 * 17 16 15 20 20 C 1.39880 * 120.56195 * 353.72945 * 19 17 16 21 21 C 1.38393 * 118.31692 * 179.97438 * 20 19 17 22 22 C 1.38320 * 119.32842 * 359.97438 * 21 20 19 23 23 N 1.31909 * 121.07895 * 359.97438 * 22 21 20 24 24 C 1.31834 * 121.85287 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 119.73138 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.46659 * 270.02165 * 1 2 3 27 27 H 1.09000 * 109.46780 * 30.01681 * 1 2 3 28 28 H 1.09000 * 109.47282 * 150.01719 * 1 2 3 29 29 H 1.07998 * 120.07889 * 359.96131 * 3 2 1 30 30 H 0.97008 * 119.99574 * 180.02562 * 8 7 5 31 31 H 1.08003 * 120.08147 * 179.97438 * 13 4 3 32 32 H 1.08003 * 119.91997 * 180.29574 * 14 13 4 33 33 H 0.97001 * 119.99899 * 336.77877 * 16 15 2 34 34 H 0.97003 * 119.99733 * 5.00635 * 18 17 16 35 35 H 1.08006 * 120.83802 * 359.95567 * 20 19 17 36 36 H 1.08005 * 120.33404 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.45819 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1797 0.0005 5 6 4.3068 2.3989 0.0000 6 1 3.9242 3.2467 -0.5487 7 6 5.5068 2.5091 0.7103 8 7 6.2676 3.5621 0.5504 9 14 6.0236 1.1535 1.8871 10 1 6.7783 0.1132 1.1431 11 1 6.8866 1.7248 2.9520 12 1 4.8164 0.5447 2.5017 13 6 4.2918 -0.0455 0.0005 14 6 3.5985 -1.2193 0.0057 15 6 2.2029 -1.2093 0.0005 16 7 1.5026 -2.4104 0.0005 17 6 2.1038 -3.5592 -0.4700 18 7 1.8593 -4.7037 0.1023 19 6 3.0265 -3.4917 -1.6253 20 6 3.1972 -2.2956 -2.3302 21 6 4.0720 -2.2847 -3.4025 22 6 4.7443 -3.4454 -3.7402 23 7 4.5650 -4.5595 -3.0571 24 6 3.7428 -4.6202 -2.0283 25 17 3.5492 -6.1154 -1.1679 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5136 29 1 1.6472 2.1171 -0.0006 30 1 7.0999 3.6384 1.0427 31 1 5.3718 -0.0546 0.0005 32 1 4.1305 -2.1592 0.0105 33 1 0.5912 -2.4404 0.3314 34 1 1.2000 -4.7602 0.8116 35 1 2.6596 -1.4033 -2.0450 36 1 4.2282 -1.3791 -3.9699 37 1 5.4272 -3.4394 -4.5769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171352519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:50 Heat of formation + Delta-G solvation = 89.701791 kcal Electronic energy + Delta-G solvation = -23575.243288 eV Core-core repulsion = 20150.860534 eV Total energy + Delta-G solvation = -3424.382753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53194 -38.96799 -36.82821 -36.24043 -34.04946 -32.65114 -32.37314 -31.60196 -30.72104 -29.18864 -26.48535 -24.78496 -24.32830 -23.44818 -21.52603 -20.60028 -19.96950 -17.52302 -17.32090 -17.09984 -16.88917 -15.95806 -15.40935 -15.08416 -14.55372 -14.25819 -13.96207 -13.71925 -13.64289 -12.90635 -12.86803 -12.79528 -12.43738 -12.17295 -11.96739 -11.79644 -11.66819 -11.40023 -11.23734 -10.96409 -10.82627 -10.35673 -10.14058 -9.84418 -9.81042 -9.62516 -9.34053 -9.06614 -8.83266 -8.60067 -7.87750 -7.03547 -6.94369 -4.50936 0.66447 1.19863 2.09510 2.23343 2.41854 2.84699 3.06951 3.15822 3.24591 3.61961 3.83302 3.91377 4.33669 4.38646 4.65712 4.90152 5.04440 5.17286 5.29712 5.44853 5.51029 5.57457 5.84230 5.84794 5.95422 6.13269 6.14412 6.26993 6.31810 6.43386 6.50781 6.66572 6.89500 6.97606 7.14522 7.32411 7.64970 7.69264 7.72673 7.79259 8.03365 8.25976 8.48032 8.52395 8.71367 10.05917 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.004982 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.460523 B = 5618.426124 C = 6266.329448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.084 4.084 3 C -0.179 4.179 4 C 0.083 3.917 5 C -0.447 4.447 6 H 0.091 0.909 7 C 0.083 3.917 8 N -0.816 5.816 9 Si 0.909 3.091 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.248 1.248 13 C -0.211 4.211 14 C -0.104 4.104 15 C 0.029 3.971 16 N -0.699 5.699 17 C 0.452 3.548 18 N -0.716 5.716 19 C -0.096 4.096 20 C -0.020 4.020 21 C -0.179 4.179 22 C 0.128 3.872 23 N -0.493 5.493 24 C 0.208 3.792 25 Cl 0.006 6.994 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.285 0.715 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.399 0.601 34 H 0.329 0.671 35 H 0.165 0.835 36 H 0.147 0.853 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 -9.906 -4.463 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.087 4.087 3 C -0.198 4.198 4 C 0.079 3.921 5 C -0.476 4.476 6 H 0.109 0.891 7 C -0.134 4.134 8 N -0.441 5.441 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.219 1.219 12 H -0.171 1.171 13 C -0.231 4.231 14 C -0.125 4.125 15 C -0.066 4.066 16 N -0.335 5.335 17 C 0.172 3.828 18 N -0.344 5.344 19 C -0.102 4.102 20 C -0.047 4.047 21 C -0.199 4.199 22 C -0.030 4.030 23 N -0.204 5.204 24 C 0.042 3.958 25 Cl 0.035 6.965 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.236 0.764 34 H 0.146 0.854 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.156 -11.565 -4.745 13.522 hybrid contribution -0.866 0.925 1.563 2.012 sum -6.022 -10.640 -3.183 12.634 Atomic orbital electron populations 1.20645 0.93096 1.01564 1.01106 1.18959 0.94097 0.92132 1.03532 1.20592 0.93901 0.95493 1.09858 1.17739 0.91770 0.92677 0.89906 1.19378 1.03338 0.97811 1.27092 0.89065 1.26071 0.94528 0.96268 0.96566 1.69662 1.10705 1.28133 1.35610 0.86386 0.79872 0.80416 0.79727 1.19478 1.21852 1.17148 1.20822 0.98741 0.92321 1.11231 1.20218 0.91886 0.97500 1.02923 1.16966 0.90557 0.84058 1.15068 1.42768 1.16581 1.06615 1.67520 1.20240 0.90343 0.83030 0.89155 1.70564 1.22156 1.23850 1.17829 1.19084 1.00268 0.93804 0.97071 1.22405 0.94238 0.97212 0.90878 1.22212 0.98584 1.00323 0.98751 1.22804 0.96205 0.87041 0.96962 1.67126 1.17256 1.29432 1.06588 1.21780 0.93052 0.88783 0.92169 1.98417 1.95252 1.30101 1.72732 0.92343 0.91906 0.92965 0.87565 0.90465 0.87514 0.88659 0.76427 0.85408 0.81726 0.83547 0.81828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.43 36.00 0.34 -1.11 16 2 C -0.08 -1.48 5.86 -104.82 -0.61 -2.09 16 3 C -0.18 -3.61 9.37 -39.27 -0.37 -3.98 16 4 C 0.08 1.88 5.03 -106.79 -0.54 1.35 16 5 C -0.45 -11.24 9.57 -37.87 -0.36 -11.60 16 6 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.08 2.09 5.47 -17.34 -0.09 1.99 16 8 N -0.82 -21.06 13.93 55.54 0.77 -20.29 16 9 Si 0.91 20.31 24.52 -169.99 -4.17 16.15 16 10 H -0.27 -5.88 6.47 56.52 0.37 -5.52 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.25 -5.70 6.97 56.52 0.39 -5.30 16 13 C -0.21 -4.62 7.09 -39.26 -0.28 -4.90 16 14 C -0.10 -2.05 6.44 -39.78 -0.26 -2.31 16 15 C 0.03 0.51 4.26 -83.62 -0.36 0.15 16 16 N -0.70 -10.45 5.02 -8.19 -0.04 -10.49 16 17 C 0.45 7.03 6.98 -154.16 -1.08 5.96 16 18 N -0.72 -10.76 10.70 32.55 0.35 -10.41 16 19 C -0.10 -1.53 4.58 -104.77 -0.48 -2.01 16 20 C -0.02 -0.30 7.30 -38.91 -0.28 -0.59 16 21 C -0.18 -2.31 10.10 -39.49 -0.40 -2.71 16 22 C 0.13 1.61 11.17 -17.49 -0.20 1.41 16 23 N -0.49 -7.49 10.33 -10.05 -0.10 -7.60 16 24 C 0.21 3.34 7.31 -17.04 -0.12 3.21 16 25 Cl 0.01 0.09 25.93 -51.86 -1.34 -1.25 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.05 0.62 6.94 -51.93 -0.36 0.26 16 29 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 31 H 0.11 2.42 4.76 -52.48 -0.25 2.17 16 32 H 0.10 1.89 6.26 -52.48 -0.33 1.56 16 33 H 0.40 5.09 7.41 -40.82 -0.30 4.79 16 34 H 0.33 4.39 8.90 -40.82 -0.36 4.03 16 35 H 0.17 2.66 5.19 -52.48 -0.27 2.38 16 36 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -26.60 317.15 -8.43 -35.03 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -3.59 Total: 11.31 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -5.09 Total: -17.22 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.98 Total: -48.79 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.17 Total: 16.15 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.34 Total: -1.25 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.60 -8.43 -35.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171352519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.730 kcal (2) G-P(sol) polarization free energy of solvation -26.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds