Wall clock time and date at job start Tue Mar 31 2020 10:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47019 * 2 1 4 4 C 1.52995 * 109.47155 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47119 * 179.97438 * 4 3 2 6 6 C 1.37100 * 120.00077 * 265.56685 * 5 4 3 7 7 H 1.07998 * 119.99894 * 145.66962 * 6 5 4 8 8 C 1.38946 * 119.99679 * 325.67232 * 6 5 4 9 9 N 1.31412 * 120.00727 * 338.40387 * 8 6 5 10 10 Si 1.86799 * 119.99712 * 158.40628 * 8 6 5 11 11 H 1.48495 * 109.47318 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47069 * 119.99918 * 10 8 6 13 13 H 1.48499 * 109.47283 * 239.99668 * 10 8 6 14 14 C 1.34777 * 119.99997 * 85.56447 * 5 4 3 15 15 O 1.21296 * 119.99887 * 0.02562 * 14 5 4 16 16 C 1.50692 * 120.00128 * 179.97438 * 14 5 4 17 17 S 1.81003 * 109.47360 * 180.02562 * 16 14 5 18 18 C 1.76198 * 100.00042 * 180.02562 * 17 16 14 19 19 N 1.30311 * 126.17189 * 359.97356 * 18 17 16 20 20 N 1.26097 * 117.60040 * 180.02562 * 19 18 17 21 21 C 1.29319 * 117.97950 * 0.02562 * 20 19 18 22 22 C 1.50702 * 126.05924 * 179.97438 * 21 20 19 23 23 S 1.76476 * 107.88159 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.46997 * 299.99787 * 1 2 3 25 25 H 1.08994 * 109.47184 * 59.99799 * 1 2 3 26 26 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 240.00212 * 2 1 3 28 28 H 1.09002 * 109.47207 * 119.99841 * 2 1 3 29 29 H 1.09007 * 109.46967 * 59.99838 * 3 2 1 30 30 H 1.09005 * 109.46967 * 300.00497 * 3 2 1 31 31 H 1.09001 * 109.46862 * 60.00212 * 4 3 2 32 32 H 1.09002 * 109.47206 * 299.99923 * 4 3 2 33 33 H 0.96997 * 120.00387 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.46995 * 60.00153 * 16 14 5 35 35 H 1.09002 * 109.47650 * 300.00221 * 16 14 5 36 36 H 1.09001 * 109.46896 * 90.02595 * 22 21 20 37 37 H 1.09002 * 109.46815 * 210.02567 * 22 21 20 38 38 H 1.08995 * 109.47131 * 330.02161 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3738 3.4389 -1.1840 7 1 4.1969 4.4972 -1.3066 8 6 4.9211 2.7005 -2.2260 9 7 5.5240 1.5597 -1.9773 10 14 4.7999 3.3296 -3.9807 11 1 4.0791 4.6279 -3.9924 12 1 6.1649 3.5169 -4.5348 13 1 4.0600 2.3446 -4.8098 14 6 4.1973 3.4900 1.1634 15 8 3.9185 2.9457 2.2109 16 6 4.7001 4.9105 1.1628 17 16 4.7767 5.5242 2.8640 18 6 5.3770 7.1552 2.5741 19 7 5.6576 7.6765 1.4133 20 7 6.0796 8.8646 1.3930 21 6 6.2056 9.4830 2.5217 22 6 6.6911 10.8973 2.7089 23 16 5.7080 8.3773 3.8039 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 0.9287 -0.8891 32 1 3.9330 0.9289 0.8909 33 1 5.9057 1.0441 -2.7049 34 1 4.0227 5.5355 0.5809 35 1 5.6956 4.9435 0.7200 36 1 5.8424 11.5804 2.6748 37 1 7.1899 10.9854 3.6742 38 1 7.3924 11.1490 1.9134 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176922818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:08 Heat of formation + Delta-G solvation = -1.104287 kcal Electronic energy + Delta-G solvation = -21234.950100 eV Core-core repulsion = 17944.117358 eV Total energy + Delta-G solvation = -3290.832743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00410 -40.60274 -37.27017 -35.61947 -34.09872 -33.54451 -31.58864 -30.15701 -29.23132 -26.88539 -26.27728 -24.38193 -22.05005 -21.90778 -21.20985 -20.21618 -19.04341 -18.05005 -17.86083 -17.01734 -16.79021 -16.31178 -16.17256 -15.97073 -15.62921 -14.84767 -14.67962 -14.54062 -14.13823 -14.07850 -13.84780 -13.71249 -13.51287 -13.36439 -13.12141 -13.05562 -12.78277 -12.17375 -12.11002 -12.06220 -11.94733 -11.82432 -11.56340 -11.55533 -11.44487 -11.18086 -11.08417 -10.62426 -10.60935 -9.59597 -8.87286 -8.39005 -6.14141 -0.78529 -0.54274 0.08053 0.40928 0.86344 1.35118 1.41637 1.45551 1.57549 1.82003 2.26239 2.81918 2.97666 3.23585 3.78051 3.94102 4.06558 4.10371 4.18817 4.24506 4.31661 4.45195 4.56055 4.64922 4.73694 4.83851 4.86382 4.98981 5.04862 5.08804 5.17624 5.34133 5.40505 5.41855 5.55121 5.88257 6.31770 7.00183 7.39227 7.43698 7.83577 8.62715 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.003721 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.390897 B = 7522.575960 C = 8968.074020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.116 4.116 4 C 0.115 3.885 5 N -0.433 5.433 6 C -0.363 4.363 7 H 0.096 0.904 8 C 0.013 3.987 9 N -0.882 5.882 10 Si 0.978 3.022 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.271 1.271 14 C 0.466 3.534 15 O -0.618 6.618 16 C -0.106 4.106 17 S 0.091 5.909 18 C -0.037 4.037 19 N -0.299 5.299 20 N -0.294 5.294 21 C 0.034 3.966 22 C -0.072 4.072 23 S 0.146 5.854 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.276 0.724 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.439 12.020 7.277 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.155 4.155 4 C -0.009 4.009 5 N -0.150 5.150 6 C -0.491 4.491 7 H 0.114 0.886 8 C -0.192 4.192 9 N -0.518 5.518 10 Si 0.802 3.198 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.196 1.196 14 C 0.254 3.746 15 O -0.507 6.507 16 C -0.259 4.259 17 S 0.321 5.679 18 C -0.424 4.424 19 N -0.140 5.140 20 N -0.130 5.130 21 C -0.250 4.250 22 C -0.133 4.133 23 S 0.386 5.614 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.748 10.958 8.337 13.880 hybrid contribution 0.549 0.460 -2.195 2.309 sum -1.200 11.418 6.142 13.021 Atomic orbital electron populations 1.21713 0.94153 1.02375 1.01782 1.21408 0.97117 0.95007 1.01822 1.21785 0.95155 0.98003 1.00545 1.21515 0.93441 0.83630 1.02264 1.43639 1.54143 1.12484 1.04697 1.19780 1.43042 0.96014 0.90218 0.88638 1.26098 0.93043 0.96209 1.03821 1.70008 1.31589 1.15874 1.34350 0.85108 0.78177 0.78990 0.77566 1.18564 1.20543 1.19568 1.19910 0.82444 0.88117 0.84148 1.90535 1.57812 1.70548 1.31778 1.23422 1.07116 0.97987 0.97333 1.86055 1.77010 0.96058 1.08786 1.31931 1.07034 1.07947 0.95477 1.71770 1.15830 1.04838 1.21581 1.70721 1.15430 1.01351 1.25525 1.30794 1.01218 1.04276 0.88732 1.20724 1.03434 0.83257 1.05895 1.85313 1.61668 1.04001 1.10462 0.92946 0.92622 0.91042 0.91968 0.92292 0.93986 0.92654 0.88427 0.94568 0.91423 0.86921 0.87322 0.86876 0.86843 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.12 -3.77 5.93 30.60 0.18 -3.59 16 3 C -0.12 -4.73 5.51 30.59 0.17 -4.56 16 4 C 0.11 5.53 4.92 86.38 0.42 5.95 16 5 N -0.43 -22.02 2.55 -635.55 -1.62 -23.64 16 6 C -0.36 -18.39 8.70 84.04 0.73 -17.66 16 7 H 0.10 4.70 6.98 -2.91 -0.02 4.68 16 8 C 0.01 0.63 4.94 84.93 0.42 1.05 16 9 N -0.88 -45.92 11.31 21.66 0.24 -45.68 16 10 Si 0.98 39.43 29.60 68.60 2.03 41.46 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 14 C 0.47 23.08 7.63 87.65 0.67 23.74 16 15 O -0.62 -32.51 15.52 -3.08 -0.05 -32.56 16 16 C -0.11 -4.52 4.36 71.23 0.31 -4.21 16 17 S 0.09 3.34 21.45 -56.49 -1.21 2.13 16 18 C -0.04 -1.21 7.85 130.47 1.02 -0.19 16 19 N -0.30 -11.00 10.96 -54.83 -0.60 -11.60 16 20 N -0.29 -9.48 11.55 -47.71 -0.55 -10.03 16 21 C 0.03 0.78 7.79 88.48 0.69 1.47 16 22 C -0.07 -0.79 10.51 71.24 0.75 -0.04 16 23 S 0.15 3.37 23.54 -56.49 -1.33 2.04 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.10 4.95 5.34 -2.39 -0.01 4.94 16 32 H 0.04 1.83 7.56 -2.39 -0.02 1.81 16 33 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 34 H 0.11 4.69 7.65 -2.40 -0.02 4.67 16 35 H 0.11 4.82 8.10 -2.39 -0.02 4.80 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -64.85 351.18 4.06 -60.79 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 1.07 Total: 18.15 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 6.08 Total: -1.07 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -2.53 Total: -90.95 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.05 Total: -32.56 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 16 Polarization: 6.71 SS G_CDS: -2.54 Total: 4.17 kcal Total: -64.85 4.06 -60.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176922818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.689 kcal (2) G-P(sol) polarization free energy of solvation -64.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds