Wall clock time and date at job start Tue Mar 31 2020 11:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36710 * 120.00195 * 2 1 4 4 H 1.08004 * 120.00067 * 205.62559 * 3 2 1 5 5 C 1.39126 * 120.00069 * 25.61600 * 3 2 1 6 6 N 1.31325 * 119.99854 * 11.36229 * 5 3 2 7 7 Si 1.86796 * 120.00044 * 191.35666 * 5 3 2 8 8 H 1.48496 * 109.47220 * 60.00435 * 7 5 3 9 9 H 1.48501 * 109.47135 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47315 * 300.00095 * 7 5 3 11 11 C 1.34772 * 119.99774 * 180.02562 * 2 1 3 12 12 O 1.21761 * 120.00167 * 180.02562 * 11 2 1 13 13 C 1.46233 * 120.00066 * 359.97438 * 11 2 1 14 14 C 1.34974 * 120.00212 * 180.02562 * 13 11 2 15 15 C 1.47155 * 120.00067 * 180.02562 * 14 13 11 16 16 C 1.39908 * 120.14604 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.93152 * 179.97438 * 16 15 14 18 18 C 1.38346 * 120.24163 * 359.97438 * 17 16 15 19 19 C 1.38880 * 120.29134 * 359.79183 * 18 17 16 20 20 O 1.35906 * 119.97007 * 180.25590 * 19 18 17 21 21 C 1.42904 * 116.99821 * 0.21257 * 20 19 18 22 22 F 1.39895 * 109.47251 * 59.99811 * 21 20 19 23 23 F 1.39900 * 109.47111 * 180.02562 * 21 20 19 24 24 F 1.39906 * 109.46764 * 299.99609 * 21 20 19 25 25 C 1.38413 * 120.05853 * 0.46420 * 19 18 17 26 26 H 1.08997 * 109.46840 * 264.93112 * 1 2 3 27 27 H 1.09000 * 109.46867 * 24.92313 * 1 2 3 28 28 H 1.08993 * 109.47162 * 144.92526 * 1 2 3 29 29 H 0.96999 * 119.99760 * 179.97438 * 6 5 3 30 30 H 1.08005 * 120.00191 * 0.02562 * 13 11 2 31 31 H 1.08005 * 119.99597 * 0.02562 * 14 13 11 32 32 H 1.07990 * 120.03390 * 359.97438 * 16 15 14 33 33 H 1.08005 * 119.88226 * 180.02562 * 17 16 15 34 34 H 1.07995 * 119.85947 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.11385 * 179.79196 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1487 1.1839 0.0000 4 1 3.1490 1.2299 -0.4045 5 6 1.5556 2.3296 0.5209 6 7 0.4415 2.2370 1.2098 7 14 2.3443 3.9995 0.2405 8 1 2.4268 4.2695 -1.2174 9 1 1.5233 5.0506 0.8934 10 1 3.7102 4.0060 0.8232 11 6 2.1389 -1.1672 -0.0005 12 8 3.3565 -1.1673 -0.0001 13 6 1.4077 -2.4336 -0.0005 14 6 2.0825 -3.6025 -0.0005 15 6 1.3466 -4.8769 -0.0011 16 6 -0.0524 -4.8804 -0.0022 17 6 -0.7374 -6.0770 -0.0032 18 6 -0.0463 -7.2755 -0.0038 19 6 1.3424 -7.2833 -0.0076 20 8 2.0147 -8.4644 -0.0134 21 6 1.2290 -9.6580 -0.0199 22 9 0.4223 -9.6791 -1.1626 23 9 2.0744 -10.7728 -0.0246 24 9 0.4213 -9.6908 1.1220 25 6 2.0425 -6.0892 -0.0012 26 1 -0.3633 -0.0908 1.0236 27 1 -0.3633 0.9320 -0.4331 28 1 -0.3633 -0.8410 -0.5905 29 1 0.0282 3.0357 1.5733 30 1 0.3276 -2.4336 -0.0005 31 1 3.1625 -3.6025 -0.0001 32 1 -0.5953 -3.9468 -0.0022 33 1 -1.8175 -6.0788 -0.0045 34 1 -0.5891 -8.2091 -0.0050 35 1 3.1224 -6.0943 -0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179946629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:52 Heat of formation + Delta-G solvation = -192.108038 kcal Electronic energy + Delta-G solvation = -24933.526309 eV Core-core repulsion = 20482.064709 eV Total energy + Delta-G solvation = -4451.461601 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.49179 -49.20739 -49.07863 -41.32430 -40.38742 -38.92661 -36.76488 -34.75861 -33.67639 -31.93783 -30.47188 -28.30229 -27.18388 -26.71524 -24.77369 -23.85963 -22.56056 -20.76200 -20.20826 -20.05815 -19.40309 -18.95975 -18.41484 -17.52167 -17.10349 -16.78124 -16.31064 -16.26302 -15.91207 -15.82399 -15.71447 -15.55881 -15.49062 -15.34288 -15.19296 -15.12997 -14.58048 -14.35793 -14.17564 -13.81195 -13.49452 -13.37721 -13.17895 -13.04121 -12.67280 -12.59015 -12.33014 -12.13181 -12.03090 -11.25875 -11.02989 -10.46438 -9.80439 -9.71586 -9.27980 -8.40548 -6.01252 -0.50802 0.21299 0.41108 0.97089 1.41168 1.44551 1.51789 1.74916 2.25747 2.41184 2.71791 2.72165 2.96249 3.04533 3.16563 3.58310 3.62873 3.86091 3.94819 4.10113 4.27730 4.29721 4.41434 4.66375 4.82615 4.97848 4.99291 5.07684 5.21592 5.29097 5.34262 5.38894 5.48383 5.62132 5.85159 6.08720 6.46496 7.12306 7.40237 8.00692 8.61819 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.043119 B = 0.002260 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.212475 B =12388.711372 C =12802.277892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.446 5.446 3 C -0.345 4.345 4 H 0.072 0.928 5 C 0.000 4.000 6 N -0.887 5.887 7 Si 0.992 3.008 8 H -0.265 1.265 9 H -0.267 1.267 10 H -0.277 1.277 11 C 0.449 3.551 12 O -0.646 6.646 13 C -0.166 4.166 14 C -0.060 4.060 15 C -0.027 4.027 16 C -0.126 4.126 17 C -0.070 4.070 18 C -0.190 4.190 19 C 0.091 3.909 20 O -0.320 6.320 21 C 0.609 3.391 22 F -0.162 7.162 23 F -0.131 7.131 24 F -0.163 7.163 25 C -0.119 4.119 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.278 0.722 30 H 0.154 0.846 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 -21.813 -2.391 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.162 5.162 3 C -0.474 4.474 4 H 0.090 0.910 5 C -0.203 4.203 6 N -0.524 5.524 7 Si 0.815 3.185 8 H -0.190 1.190 9 H -0.191 1.191 10 H -0.203 1.203 11 C 0.242 3.758 12 O -0.537 6.537 13 C -0.186 4.186 14 C -0.081 4.081 15 C -0.028 4.028 16 C -0.144 4.144 17 C -0.087 4.087 18 C -0.209 4.209 19 C 0.050 3.950 20 O -0.240 6.240 21 C 0.518 3.482 22 F -0.144 7.144 23 F -0.112 7.112 24 F -0.145 7.145 25 C -0.137 4.137 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.171 0.829 31 H 0.136 0.864 32 H 0.168 0.832 33 H 0.186 0.814 34 H 0.165 0.835 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.164 -21.674 -2.288 22.942 hybrid contribution 0.495 0.671 0.086 0.838 sum -6.669 -21.003 -2.202 22.146 Atomic orbital electron populations 1.21580 0.79004 1.01307 1.00952 1.43761 1.07117 1.04728 1.60604 1.19611 1.01306 0.86421 1.40038 0.91050 1.26193 0.96969 1.03166 0.94019 1.69991 1.19350 1.31462 1.31639 0.85016 0.78017 0.76420 0.79030 1.18969 1.19116 1.20285 1.18850 0.87445 0.85471 0.84076 1.90591 1.15863 1.88218 1.58987 1.23138 1.01112 0.91164 1.03221 1.22088 0.99607 0.90420 0.95958 1.18748 0.93768 0.91029 0.99224 1.21775 0.92653 1.00204 0.99784 1.21228 1.01896 0.89947 0.95669 1.21846 0.91548 1.01615 1.05860 1.18595 0.91496 0.82626 1.02319 1.86397 1.35723 1.12501 1.89382 1.19232 0.74902 0.79233 0.74794 1.93306 1.73605 1.96196 1.51340 1.93314 1.71830 1.49753 1.96308 1.93309 1.73565 1.96184 1.51437 1.20626 1.01173 0.88266 1.03661 0.93376 0.92028 0.90900 0.91262 0.82881 0.86432 0.83249 0.81373 0.83540 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.87 8.28 127.77 1.06 5.93 16 2 N -0.45 -23.29 3.00 -663.97 -1.99 -25.28 16 3 C -0.35 -19.74 9.21 84.15 0.77 -18.97 16 4 H 0.07 4.36 7.46 -2.91 -0.02 4.34 16 5 C 0.00 -0.01 5.06 84.98 0.43 0.42 16 6 N -0.89 -46.07 10.83 21.69 0.24 -45.83 16 7 Si 0.99 41.81 29.57 68.60 2.03 43.84 16 8 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 9 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 11 C 0.45 22.70 7.55 86.32 0.65 23.36 16 12 O -0.65 -38.06 15.95 -4.54 -0.07 -38.13 16 13 C -0.17 -6.11 8.60 23.60 0.20 -5.91 16 14 C -0.06 -1.96 9.46 23.86 0.23 -1.73 16 15 C -0.03 -0.70 5.87 -20.16 -0.12 -0.82 16 16 C -0.13 -2.61 9.41 22.59 0.21 -2.40 16 17 C -0.07 -1.15 10.02 22.21 0.22 -0.92 16 18 C -0.19 -3.45 8.26 22.45 0.19 -3.26 16 19 C 0.09 1.98 6.48 22.47 0.15 2.13 16 20 O -0.32 -6.64 10.37 -92.49 -0.96 -7.60 16 21 C 0.61 10.30 3.42 113.37 0.39 10.69 16 22 F -0.16 -2.63 15.57 44.97 0.70 -1.93 16 23 F -0.13 -2.15 17.53 44.97 0.79 -1.36 16 24 F -0.16 -2.66 15.54 44.97 0.70 -1.96 16 25 C -0.12 -2.84 9.73 22.69 0.22 -2.62 16 26 H 0.05 2.08 7.85 -2.39 -0.02 2.06 16 27 H 0.06 2.78 6.79 -2.39 -0.02 2.76 16 28 H 0.07 2.40 6.39 -2.39 -0.02 2.38 16 29 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 30 H 0.15 4.47 4.33 -2.91 -0.01 4.46 16 31 H 0.12 4.25 7.52 -2.91 -0.02 4.23 16 32 H 0.15 2.67 6.16 -2.92 -0.02 2.65 16 33 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.15 2.17 5.07 -2.91 -0.01 2.15 16 35 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -68.12 317.03 7.19 -60.93 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.16 Total: 11.44 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.60 Total: 5.88 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.76 Total: -71.11 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.03 Total: -45.73 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 2.19 Total: -5.24 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -68.12 7.19 -60.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179946629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.180 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds