Wall clock time and date at job start Tue Mar 31 2020 11:19:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.36710 * 120.00195 * 2 1
4 4 H 1.08004 * 120.00067 * 205.62559 * 3 2 1
5 5 C 1.39126 * 120.00069 * 25.61600 * 3 2 1
6 6 N 1.31325 * 119.99854 * 11.36229 * 5 3 2
7 7 Si 1.86796 * 120.00044 * 191.35666 * 5 3 2
8 8 H 1.48496 * 109.47220 * 60.00435 * 7 5 3
9 9 H 1.48501 * 109.47135 * 180.02562 * 7 5 3
10 10 H 1.48500 * 109.47315 * 300.00095 * 7 5 3
11 11 C 1.34772 * 119.99774 * 180.02562 * 2 1 3
12 12 O 1.21761 * 120.00167 * 180.02562 * 11 2 1
13 13 C 1.46233 * 120.00066 * 359.97438 * 11 2 1
14 14 C 1.34974 * 120.00212 * 180.02562 * 13 11 2
15 15 C 1.47155 * 120.00067 * 180.02562 * 14 13 11
16 16 C 1.39908 * 120.14604 * 0.02562 * 15 14 13
17 17 C 1.37881 * 119.93152 * 179.97438 * 16 15 14
18 18 C 1.38346 * 120.24163 * 359.97438 * 17 16 15
19 19 C 1.38880 * 120.29134 * 359.79183 * 18 17 16
20 20 O 1.35906 * 119.97007 * 180.25590 * 19 18 17
21 21 C 1.42904 * 116.99821 * 0.21257 * 20 19 18
22 22 F 1.39895 * 109.47251 * 59.99811 * 21 20 19
23 23 F 1.39900 * 109.47111 * 180.02562 * 21 20 19
24 24 F 1.39906 * 109.46764 * 299.99609 * 21 20 19
25 25 C 1.38413 * 120.05853 * 0.46420 * 19 18 17
26 26 H 1.08997 * 109.46840 * 264.93112 * 1 2 3
27 27 H 1.09000 * 109.46867 * 24.92313 * 1 2 3
28 28 H 1.08993 * 109.47162 * 144.92526 * 1 2 3
29 29 H 0.96999 * 119.99760 * 179.97438 * 6 5 3
30 30 H 1.08005 * 120.00191 * 0.02562 * 13 11 2
31 31 H 1.08005 * 119.99597 * 0.02562 * 14 13 11
32 32 H 1.07990 * 120.03390 * 359.97438 * 16 15 14
33 33 H 1.08005 * 119.88226 * 180.02562 * 17 16 15
34 34 H 1.07995 * 119.85947 * 180.02562 * 18 17 16
35 35 H 1.07999 * 120.11385 * 179.79196 * 25 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1487 1.1839 0.0000
4 1 3.1490 1.2299 -0.4045
5 6 1.5556 2.3296 0.5209
6 7 0.4415 2.2370 1.2098
7 14 2.3443 3.9995 0.2405
8 1 2.4268 4.2695 -1.2174
9 1 1.5233 5.0506 0.8934
10 1 3.7102 4.0060 0.8232
11 6 2.1389 -1.1672 -0.0005
12 8 3.3565 -1.1673 -0.0001
13 6 1.4077 -2.4336 -0.0005
14 6 2.0825 -3.6025 -0.0005
15 6 1.3466 -4.8769 -0.0011
16 6 -0.0524 -4.8804 -0.0022
17 6 -0.7374 -6.0770 -0.0032
18 6 -0.0463 -7.2755 -0.0038
19 6 1.3424 -7.2833 -0.0076
20 8 2.0147 -8.4644 -0.0134
21 6 1.2290 -9.6580 -0.0199
22 9 0.4223 -9.6791 -1.1626
23 9 2.0744 -10.7728 -0.0246
24 9 0.4213 -9.6908 1.1220
25 6 2.0425 -6.0892 -0.0012
26 1 -0.3633 -0.0908 1.0236
27 1 -0.3633 0.9320 -0.4331
28 1 -0.3633 -0.8410 -0.5905
29 1 0.0282 3.0357 1.5733
30 1 0.3276 -2.4336 -0.0005
31 1 3.1625 -3.6025 -0.0001
32 1 -0.5953 -3.9468 -0.0022
33 1 -1.8175 -6.0788 -0.0045
34 1 -0.5891 -8.2091 -0.0050
35 1 3.1224 -6.0943 -0.0008
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001179946629.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:19:52
Heat of formation + Delta-G solvation = -192.108038 kcal
Electronic energy + Delta-G solvation = -24933.526309 eV
Core-core repulsion = 20482.064709 eV
Total energy + Delta-G solvation = -4451.461601 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-51.49179 -49.20739 -49.07863 -41.32430 -40.38742 -38.92661 -36.76488 -34.75861
-33.67639 -31.93783 -30.47188 -28.30229 -27.18388 -26.71524 -24.77369 -23.85963
-22.56056 -20.76200 -20.20826 -20.05815 -19.40309 -18.95975 -18.41484 -17.52167
-17.10349 -16.78124 -16.31064 -16.26302 -15.91207 -15.82399 -15.71447 -15.55881
-15.49062 -15.34288 -15.19296 -15.12997 -14.58048 -14.35793 -14.17564 -13.81195
-13.49452 -13.37721 -13.17895 -13.04121 -12.67280 -12.59015 -12.33014 -12.13181
-12.03090 -11.25875 -11.02989 -10.46438 -9.80439 -9.71586 -9.27980 -8.40548
-6.01252 -0.50802 0.21299 0.41108 0.97089 1.41168 1.44551 1.51789
1.74916 2.25747 2.41184 2.71791 2.72165 2.96249 3.04533 3.16563
3.58310 3.62873 3.86091 3.94819 4.10113 4.27730 4.29721 4.41434
4.66375 4.82615 4.97848 4.99291 5.07684 5.21592 5.29097 5.34262
5.38894 5.48383 5.62132 5.85159 6.08720 6.46496 7.12306 7.40237
8.00692 8.61819
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.043119 B = 0.002260 C = 0.002187
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 649.212475 B =12388.711372 C =12802.277892
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.114 3.886
2 N -0.446 5.446
3 C -0.345 4.345
4 H 0.072 0.928
5 C 0.000 4.000
6 N -0.887 5.887
7 Si 0.992 3.008
8 H -0.265 1.265
9 H -0.267 1.267
10 H -0.277 1.277
11 C 0.449 3.551
12 O -0.646 6.646
13 C -0.166 4.166
14 C -0.060 4.060
15 C -0.027 4.027
16 C -0.126 4.126
17 C -0.070 4.070
18 C -0.190 4.190
19 C 0.091 3.909
20 O -0.320 6.320
21 C 0.609 3.391
22 F -0.162 7.162
23 F -0.131 7.131
24 F -0.163 7.163
25 C -0.119 4.119
26 H 0.048 0.952
27 H 0.061 0.939
28 H 0.073 0.927
29 H 0.278 0.722
30 H 0.154 0.846
31 H 0.118 0.882
32 H 0.150 0.850
33 H 0.169 0.831
34 H 0.147 0.853
35 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.713 -21.813 -2.391 23.260
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.028 4.028
2 N -0.162 5.162
3 C -0.474 4.474
4 H 0.090 0.910
5 C -0.203 4.203
6 N -0.524 5.524
7 Si 0.815 3.185
8 H -0.190 1.190
9 H -0.191 1.191
10 H -0.203 1.203
11 C 0.242 3.758
12 O -0.537 6.537
13 C -0.186 4.186
14 C -0.081 4.081
15 C -0.028 4.028
16 C -0.144 4.144
17 C -0.087 4.087
18 C -0.209 4.209
19 C 0.050 3.950
20 O -0.240 6.240
21 C 0.518 3.482
22 F -0.144 7.144
23 F -0.112 7.112
24 F -0.145 7.145
25 C -0.137 4.137
26 H 0.066 0.934
27 H 0.080 0.920
28 H 0.091 0.909
29 H 0.087 0.913
30 H 0.171 0.829
31 H 0.136 0.864
32 H 0.168 0.832
33 H 0.186 0.814
34 H 0.165 0.835
35 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -7.164 -21.674 -2.288 22.942
hybrid contribution 0.495 0.671 0.086 0.838
sum -6.669 -21.003 -2.202 22.146
Atomic orbital electron populations
1.21580 0.79004 1.01307 1.00952 1.43761 1.07117 1.04728 1.60604
1.19611 1.01306 0.86421 1.40038 0.91050 1.26193 0.96969 1.03166
0.94019 1.69991 1.19350 1.31462 1.31639 0.85016 0.78017 0.76420
0.79030 1.18969 1.19116 1.20285 1.18850 0.87445 0.85471 0.84076
1.90591 1.15863 1.88218 1.58987 1.23138 1.01112 0.91164 1.03221
1.22088 0.99607 0.90420 0.95958 1.18748 0.93768 0.91029 0.99224
1.21775 0.92653 1.00204 0.99784 1.21228 1.01896 0.89947 0.95669
1.21846 0.91548 1.01615 1.05860 1.18595 0.91496 0.82626 1.02319
1.86397 1.35723 1.12501 1.89382 1.19232 0.74902 0.79233 0.74794
1.93306 1.73605 1.96196 1.51340 1.93314 1.71830 1.49753 1.96308
1.93309 1.73565 1.96184 1.51437 1.20626 1.01173 0.88266 1.03661
0.93376 0.92028 0.90900 0.91262 0.82881 0.86432 0.83249 0.81373
0.83540 0.83761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 4.87 8.28 127.77 1.06 5.93 16
2 N -0.45 -23.29 3.00 -663.97 -1.99 -25.28 16
3 C -0.35 -19.74 9.21 84.15 0.77 -18.97 16
4 H 0.07 4.36 7.46 -2.91 -0.02 4.34 16
5 C 0.00 -0.01 5.06 84.98 0.43 0.42 16
6 N -0.89 -46.07 10.83 21.69 0.24 -45.83 16
7 Si 0.99 41.81 29.57 68.60 2.03 43.84 16
8 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16
9 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16
10 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16
11 C 0.45 22.70 7.55 86.32 0.65 23.36 16
12 O -0.65 -38.06 15.95 -4.54 -0.07 -38.13 16
13 C -0.17 -6.11 8.60 23.60 0.20 -5.91 16
14 C -0.06 -1.96 9.46 23.86 0.23 -1.73 16
15 C -0.03 -0.70 5.87 -20.16 -0.12 -0.82 16
16 C -0.13 -2.61 9.41 22.59 0.21 -2.40 16
17 C -0.07 -1.15 10.02 22.21 0.22 -0.92 16
18 C -0.19 -3.45 8.26 22.45 0.19 -3.26 16
19 C 0.09 1.98 6.48 22.47 0.15 2.13 16
20 O -0.32 -6.64 10.37 -92.49 -0.96 -7.60 16
21 C 0.61 10.30 3.42 113.37 0.39 10.69 16
22 F -0.16 -2.63 15.57 44.97 0.70 -1.93 16
23 F -0.13 -2.15 17.53 44.97 0.79 -1.36 16
24 F -0.16 -2.66 15.54 44.97 0.70 -1.96 16
25 C -0.12 -2.84 9.73 22.69 0.22 -2.62 16
26 H 0.05 2.08 7.85 -2.39 -0.02 2.06 16
27 H 0.06 2.78 6.79 -2.39 -0.02 2.76 16
28 H 0.07 2.40 6.39 -2.39 -0.02 2.38 16
29 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16
30 H 0.15 4.47 4.33 -2.91 -0.01 4.46 16
31 H 0.12 4.25 7.52 -2.91 -0.02 4.23 16
32 H 0.15 2.67 6.16 -2.92 -0.02 2.65 16
33 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16
34 H 0.15 2.17 5.07 -2.91 -0.01 2.15 16
35 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16
Total: -1.00 -68.12 317.03 7.19 -60.93
By element:
Atomic # 1 Polarization: 10.27 SS G_CDS: 1.16 Total: 11.44 kcal
Atomic # 6 Polarization: 1.28 SS G_CDS: 4.60 Total: 5.88 kcal
Atomic # 7 Polarization: -69.35 SS G_CDS: -1.76 Total: -71.11 kcal
Atomic # 8 Polarization: -44.70 SS G_CDS: -1.03 Total: -45.73 kcal
Atomic # 9 Polarization: -7.43 SS G_CDS: 2.19 Total: -5.24 kcal
Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal
Total: -68.12 7.19 -60.93 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001179946629.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -131.180 kcal
(2) G-P(sol) polarization free energy of solvation -68.121 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.301 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.193 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.928 kcal
(6) G-S(sol) free energy of system = (1) + (5) -192.108 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds