Wall clock time and date at job start Tue Mar 31 2020 11:26:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42904 * 113.99688 * 2 1
4 4 C 1.53003 * 109.46947 * 179.97438 * 3 2 1
5 5 C 1.53003 * 109.47392 * 179.97438 * 4 3 2
6 6 O 1.42898 * 109.47312 * 179.97438 * 5 4 3
7 7 C 1.36006 * 116.99841 * 179.97438 * 6 5 4
8 8 C 1.38696 * 119.97606 * 179.97438 * 7 6 5
9 9 C 1.38118 * 120.01522 * 180.02562 * 8 7 6
10 10 C 1.38858 * 119.97895 * 359.97438 * 9 8 7
11 11 N 1.39939 * 120.01761 * 179.97438 * 10 9 8
12 12 S 1.65602 * 120.00023 * 75.02674 * 11 10 9
13 13 O 1.42099 * 106.40336 * 177.35305 * 12 11 10
14 14 O 1.42105 * 106.39897 * 310.27218 * 12 11 10
15 15 C 1.76194 * 107.21907 * 63.80989 * 12 11 10
16 16 H 1.08007 * 120.00176 * 0.85550 * 15 12 11
17 17 C 1.37873 * 120.00099 * 180.85016 * 15 12 11
18 18 N 1.31520 * 120.00212 * 0.02562 * 17 15 12
19 19 Si 1.86803 * 119.99969 * 179.97438 * 17 15 12
20 20 H 1.48505 * 109.46753 * 90.00500 * 19 17 15
21 21 H 1.48500 * 109.47085 * 209.99968 * 19 17 15
22 22 H 1.48490 * 109.47272 * 330.00220 * 19 17 15
23 23 C 1.38858 * 119.96367 * 0.27619 * 10 9 8
24 24 C 1.38114 * 119.97975 * 359.46241 * 23 10 9
25 25 H 1.08996 * 109.46943 * 300.00191 * 1 2 3
26 26 H 1.09002 * 109.46958 * 60.00098 * 1 2 3
27 27 H 1.08999 * 109.47111 * 179.97438 * 1 2 3
28 28 H 1.08996 * 109.47558 * 60.00316 * 3 2 1
29 29 H 1.09000 * 109.47352 * 299.99619 * 3 2 1
30 30 H 1.09001 * 109.47235 * 60.00216 * 4 3 2
31 31 H 1.08997 * 109.47336 * 300.00336 * 4 3 2
32 32 H 1.09001 * 109.46650 * 59.99985 * 5 4 3
33 33 H 1.08999 * 109.46749 * 300.00575 * 5 4 3
34 34 H 1.07996 * 119.99633 * 0.03620 * 8 7 6
35 35 H 1.07991 * 120.00748 * 179.97438 * 9 8 7
36 36 H 0.96998 * 119.99871 * 255.02868 * 11 10 9
37 37 H 0.96995 * 120.00302 * 179.97438 * 18 17 15
38 38 H 1.08004 * 120.00893 * 179.70712 * 23 10 9
39 39 H 1.07998 * 119.98748 * 180.25308 * 24 23 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1847 0.0006
5 6 4.1578 2.5825 0.0000
6 8 5.5823 2.4697 0.0012
7 6 6.2935 3.6290 0.0003
8 6 7.6800 3.5915 0.0019
9 6 8.4030 4.7683 0.0015
10 6 7.7414 5.9891 -0.0011
11 7 8.4731 7.1819 -0.0009
12 16 9.2246 7.6925 -1.3855
13 8 9.8203 8.9459 -1.0799
14 8 9.9614 6.5806 -1.8755
15 6 7.9645 8.0169 -2.5736
16 1 6.9260 7.8810 -2.3101
17 6 8.3043 8.4443 -3.8396
18 7 9.5690 8.6094 -4.1606
19 14 6.9684 8.7875 -5.0994
20 1 6.5493 10.2088 -5.0017
21 1 7.4927 8.5187 -6.4625
22 1 5.8015 7.9080 -4.8356
23 6 6.3533 6.0257 0.0026
24 6 5.6318 4.8479 -0.0025
25 1 -0.3633 0.5138 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.6887 1.8464 0.8900
29 1 1.6886 1.8464 -0.8900
30 1 3.8575 0.6437 -0.8891
31 1 3.8568 0.6440 0.8908
32 1 3.8358 3.1239 0.8896
33 1 3.8364 3.1228 -0.8904
34 1 8.1944 2.6419 0.0033
35 1 9.4825 4.7389 0.0032
36 1 8.5402 7.7097 0.8102
37 1 9.8081 8.9097 -5.0514
38 1 5.8379 6.9748 0.0054
39 1 4.5522 4.8762 -0.0038
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192972398.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:19
Heat of formation + Delta-G solvation = -153.976997 kcal
Electronic energy + Delta-G solvation = -23483.418521 eV
Core-core repulsion = 19710.911098 eV
Total energy + Delta-G solvation = -3772.507423 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.03415 -38.42070 -37.68439 -35.21722 -34.04627 -33.97407 -33.12136 -32.83240
-30.77670 -28.12921 -27.21194 -26.13547 -25.37288 -22.91170 -21.82653 -21.29366
-19.07361 -18.16248 -17.60747 -16.96572 -16.85296 -16.74683 -16.17971 -15.75593
-15.59569 -15.27936 -14.94101 -14.24935 -13.98760 -13.84273 -13.59002 -13.46908
-13.20673 -12.58355 -12.48043 -12.20468 -12.02992 -11.91159 -11.64551 -11.47315
-11.27335 -11.21805 -10.91165 -10.79107 -10.61517 -10.42857 -10.32679 -10.21435
-10.09594 -9.30899 -9.24847 -8.73702 -8.73016 -7.76149 -6.70786 -5.31948
1.56566 1.62227 2.32840 2.84750 3.06311 3.13009 3.19458 3.67631
3.99927 4.05556 4.52522 4.64003 4.66961 4.69061 4.75214 4.90034
4.94370 5.01338 5.03347 5.05215 5.14259 5.18489 5.27235 5.56797
5.66644 5.70123 5.71441 5.80563 5.90286 6.11397 6.27420 6.51223
6.58681 6.71321 6.73079 6.90653 7.03408 7.32274 7.50614 7.91887
7.96538 8.88637 10.23738
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.016729 B = 0.003013 C = 0.002682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1673.303392 B = 9289.409291 C =10437.558697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.391 6.391
3 C 0.065 3.935
4 C -0.119 4.119
5 C 0.063 3.937
6 O -0.315 6.315
7 C 0.119 3.881
8 C -0.142 4.142
9 C -0.069 4.069
10 C 0.127 3.873
11 N -1.085 6.085
12 S 2.708 3.292
13 O -1.003 7.003
14 O -0.997 6.997
15 C -1.014 5.014
16 H 0.102 0.898
17 C 0.134 3.866
18 N -0.845 5.845
19 Si 0.920 3.080
20 H -0.267 1.267
21 H -0.275 1.275
22 H -0.263 1.263
23 C -0.079 4.079
24 C -0.203 4.203
25 H 0.042 0.958
26 H 0.042 0.958
27 H 0.087 0.913
28 H 0.053 0.947
29 H 0.054 0.946
30 H 0.083 0.917
31 H 0.082 0.918
32 H 0.063 0.937
33 H 0.065 0.935
34 H 0.132 0.868
35 H 0.140 0.860
36 H 0.408 0.592
37 H 0.291 0.709
38 H 0.130 0.870
39 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.681 -12.085 9.030 21.759
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.310 6.310
3 C -0.012 4.012
4 C -0.157 4.157
5 C -0.012 4.012
6 O -0.229 6.229
7 C 0.074 3.926
8 C -0.162 4.162
9 C -0.090 4.090
10 C 0.032 3.968
11 N -0.835 5.835
12 S 2.809 3.191
13 O -0.993 6.993
14 O -0.987 6.987
15 C -1.148 5.148
16 H 0.121 0.879
17 C -0.084 4.084
18 N -0.475 5.475
19 Si 0.744 3.256
20 H -0.192 1.192
21 H -0.199 1.199
22 H -0.187 1.187
23 C -0.100 4.100
24 C -0.223 4.223
25 H 0.060 0.940
26 H 0.061 0.939
27 H 0.105 0.895
28 H 0.071 0.929
29 H 0.072 0.928
30 H 0.102 0.898
31 H 0.101 0.899
32 H 0.081 0.919
33 H 0.083 0.917
34 H 0.150 0.850
35 H 0.157 0.843
36 H 0.243 0.757
37 H 0.101 0.899
38 H 0.148 0.852
39 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -14.380 -12.385 8.660 20.861
hybrid contribution -1.708 0.973 -0.627 2.063
sum -16.088 -11.412 8.033 21.298
Atomic orbital electron populations
1.22762 0.80686 1.02919 1.00126 1.87867 1.19940 1.27697 1.95466
1.22341 0.93206 0.84959 1.00687 1.21362 0.92819 0.96381 1.05127
1.22540 0.79390 0.97567 1.01753 1.86024 1.18563 1.29141 1.89184
1.18926 0.91437 0.84425 0.97809 1.20267 0.90400 0.98978 1.06515
1.21412 1.00896 0.90748 0.95950 1.17174 0.89992 0.85909 1.03751
1.53848 1.69452 1.30525 1.29645 1.00766 0.74343 0.72533 0.71462
1.93385 1.77363 1.44052 1.84526 1.93368 1.71556 1.54892 1.78838
1.30447 1.11129 1.60611 1.12583 0.87947 1.24730 0.96407 0.89395
0.97909 1.69892 1.16919 1.37654 1.23057 0.86166 0.81044 0.79424
0.78957 1.19204 1.19947 1.18669 1.21264 0.93414 0.98099 0.97181
1.21030 0.99845 0.91774 1.09633 0.93959 0.93912 0.89481 0.92904
0.92802 0.89817 0.89917 0.91892 0.91709 0.84997 0.84266 0.75722
0.89875 0.85172 0.85598
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 11.01 101.05 1.11 1.30 16
2 O -0.39 -3.57 10.70 -35.23 -0.38 -3.95 16
3 C 0.06 0.49 5.94 37.16 0.22 0.71 16
4 C -0.12 -1.03 5.95 -26.73 -0.16 -1.19 16
5 C 0.06 0.61 4.74 37.16 0.18 0.79 16
6 O -0.31 -4.18 10.14 -19.76 -0.20 -4.38 16
7 C 0.12 1.77 6.69 -39.24 -0.26 1.51 16
8 C -0.14 -2.23 9.98 -39.46 -0.39 -2.63 16
9 C -0.07 -1.23 9.29 -39.40 -0.37 -1.60 16
10 C 0.13 2.36 5.80 -83.70 -0.49 1.87 16
11 N -1.08 -21.62 5.71 32.44 0.19 -21.44 16
12 S 2.71 71.29 4.99 -107.50 -0.54 70.75 16
13 O -1.00 -29.03 18.02 -57.17 -1.03 -30.06 16
14 O -1.00 -28.68 17.06 -57.17 -0.98 -29.66 16
15 C -1.01 -27.77 9.66 30.60 0.30 -27.47 16
16 H 0.10 2.57 7.81 -52.48 -0.41 2.16 16
17 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16
18 N -0.85 -24.82 13.19 55.43 0.73 -24.09 16
19 Si 0.92 20.59 29.54 -169.99 -5.02 15.57 16
20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16
22 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16
23 C -0.08 -1.28 9.96 -39.40 -0.39 -1.67 16
24 C -0.20 -2.91 9.03 -39.46 -0.36 -3.26 16
25 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16
26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16
27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16
33 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16
34 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16
35 H 0.14 2.47 7.93 -52.49 -0.42 2.05 16
36 H 0.41 6.81 8.96 -34.47 -0.31 6.50 16
37 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16
38 H 0.13 1.91 8.06 -52.48 -0.42 1.48 16
39 H 0.13 1.41 6.29 -52.49 -0.33 1.08 16
LS Contribution 351.91 15.07 5.30 5.30
Total: -1.00 -35.88 351.91 -7.83 -43.71
By element:
Atomic # 1 Polarization: 11.46 SS G_CDS: -5.20 Total: 6.26 kcal
Atomic # 6 Polarization: -27.31 SS G_CDS: -0.71 Total: -28.02 kcal
Atomic # 7 Polarization: -46.44 SS G_CDS: 0.92 Total: -45.53 kcal
Atomic # 8 Polarization: -65.46 SS G_CDS: -2.58 Total: -68.05 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal
Atomic # 16 Polarization: 71.29 SS G_CDS: -0.54 Total: 70.75 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -35.88 -7.83 -43.71 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192972398.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -110.267 kcal
(2) G-P(sol) polarization free energy of solvation -35.881 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.147 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal
(6) G-S(sol) free energy of system = (1) + (5) -153.977 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds