Wall clock time and date at job start Tue Mar 31 2020 11:26:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42904 * 113.99688 * 2 1
4 4 C 1.53003 * 109.46947 * 179.97438 * 3 2 1
5 5 C 1.53003 * 109.47392 * 179.97438 * 4 3 2
6 6 O 1.42898 * 109.47312 * 179.97438 * 5 4 3
7 7 C 1.36006 * 116.99841 * 179.97438 * 6 5 4
8 8 C 1.38696 * 119.97606 * 179.97438 * 7 6 5
9 9 C 1.38118 * 120.01522 * 180.02562 * 8 7 6
10 10 C 1.38858 * 119.97895 * 359.97438 * 9 8 7
11 11 N 1.39939 * 120.01761 * 179.97438 * 10 9 8
12 12 S 1.65602 * 120.00023 * 75.02674 * 11 10 9
13 13 O 1.42099 * 106.40336 * 177.35305 * 12 11 10
14 14 O 1.42105 * 106.39897 * 310.27218 * 12 11 10
15 15 C 1.76194 * 107.21907 * 63.80989 * 12 11 10
16 16 H 1.08007 * 120.00176 * 0.85550 * 15 12 11
17 17 C 1.37873 * 120.00099 * 180.85016 * 15 12 11
18 18 N 1.31520 * 120.00212 * 0.02562 * 17 15 12
19 19 Si 1.86803 * 119.99969 * 179.97438 * 17 15 12
20 20 H 1.48505 * 109.46753 * 90.00500 * 19 17 15
21 21 H 1.48500 * 109.47085 * 209.99968 * 19 17 15
22 22 H 1.48490 * 109.47272 * 330.00220 * 19 17 15
23 23 C 1.38858 * 119.96367 * 0.27619 * 10 9 8
24 24 C 1.38114 * 119.97975 * 359.46241 * 23 10 9
25 25 H 1.08996 * 109.46943 * 300.00191 * 1 2 3
26 26 H 1.09002 * 109.46958 * 60.00098 * 1 2 3
27 27 H 1.08999 * 109.47111 * 179.97438 * 1 2 3
28 28 H 1.08996 * 109.47558 * 60.00316 * 3 2 1
29 29 H 1.09000 * 109.47352 * 299.99619 * 3 2 1
30 30 H 1.09001 * 109.47235 * 60.00216 * 4 3 2
31 31 H 1.08997 * 109.47336 * 300.00336 * 4 3 2
32 32 H 1.09001 * 109.46650 * 59.99985 * 5 4 3
33 33 H 1.08999 * 109.46749 * 300.00575 * 5 4 3
34 34 H 1.07996 * 119.99633 * 0.03620 * 8 7 6
35 35 H 1.07991 * 120.00748 * 179.97438 * 9 8 7
36 36 H 0.96998 * 119.99871 * 255.02868 * 11 10 9
37 37 H 0.96995 * 120.00302 * 179.97438 * 18 17 15
38 38 H 1.08004 * 120.00893 * 179.70712 * 23 10 9
39 39 H 1.07998 * 119.98748 * 180.25308 * 24 23 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1847 0.0006
5 6 4.1578 2.5825 0.0000
6 8 5.5823 2.4697 0.0012
7 6 6.2935 3.6290 0.0003
8 6 7.6800 3.5915 0.0019
9 6 8.4030 4.7683 0.0015
10 6 7.7414 5.9891 -0.0011
11 7 8.4731 7.1819 -0.0009
12 16 9.2246 7.6925 -1.3855
13 8 9.8203 8.9459 -1.0799
14 8 9.9614 6.5806 -1.8755
15 6 7.9645 8.0169 -2.5736
16 1 6.9260 7.8810 -2.3101
17 6 8.3043 8.4443 -3.8396
18 7 9.5690 8.6094 -4.1606
19 14 6.9684 8.7875 -5.0994
20 1 6.5493 10.2088 -5.0017
21 1 7.4927 8.5187 -6.4625
22 1 5.8015 7.9080 -4.8356
23 6 6.3533 6.0257 0.0026
24 6 5.6318 4.8479 -0.0025
25 1 -0.3633 0.5138 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.6887 1.8464 0.8900
29 1 1.6886 1.8464 -0.8900
30 1 3.8575 0.6437 -0.8891
31 1 3.8568 0.6440 0.8908
32 1 3.8358 3.1239 0.8896
33 1 3.8364 3.1228 -0.8904
34 1 8.1944 2.6419 0.0033
35 1 9.4825 4.7389 0.0032
36 1 8.5402 7.7097 0.8102
37 1 9.8081 8.9097 -5.0514
38 1 5.8379 6.9748 0.0054
39 1 4.5522 4.8762 -0.0038
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192972398.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:18
Heat of formation + Delta-G solvation = -181.764468 kcal
Electronic energy + Delta-G solvation = -23484.623476 eV
Core-core repulsion = 19710.911098 eV
Total energy + Delta-G solvation = -3773.712378 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.15369 -39.20454 -38.67762 -37.37619 -36.16145 -35.40634 -35.06404 -33.76206
-31.99238 -29.24582 -28.25480 -27.92871 -26.06979 -23.93230 -23.01633 -22.21814
-21.07820 -19.46470 -19.21015 -18.47219 -18.18880 -17.52658 -17.47316 -16.95101
-16.66874 -16.47557 -15.93849 -15.85038 -15.68172 -15.29542 -14.62065 -14.54910
-14.40212 -13.99599 -13.88970 -13.38429 -13.28945 -13.00517 -12.81888 -12.79876
-12.67972 -12.53247 -12.42061 -12.30619 -12.27325 -12.15703 -11.86438 -11.54657
-11.23840 -11.06404 -10.62470 -10.58975 -9.96675 -9.03649 -8.74019 -7.46884
0.07411 0.38903 0.58036 1.34534 1.35299 1.51130 2.01575 2.21053
2.59158 2.74516 2.92275 3.02553 3.67662 3.86141 3.89763 3.96231
4.08522 4.17276 4.27670 4.36714 4.37808 4.42365 4.50644 4.53569
4.57112 4.59455 4.65769 4.79937 4.88106 5.05232 5.07056 5.12072
5.24467 5.31982 5.38271 5.60452 5.74306 5.92219 6.21140 6.35009
6.50568 6.79021 8.21861
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.016729 B = 0.003013 C = 0.002682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1673.303392 B = 9289.409291 C =10437.558697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.419 6.419
3 C 0.065 3.935
4 C -0.114 4.114
5 C 0.055 3.945
6 O -0.324 6.324
7 C 0.127 3.873
8 C -0.150 4.150
9 C -0.088 4.088
10 C 0.090 3.910
11 N -1.067 6.067
12 S 2.713 3.287
13 O -1.041 7.041
14 O -1.032 7.032
15 C -1.031 5.031
16 H 0.122 0.878
17 C 0.070 3.930
18 N -0.895 5.895
19 Si 0.990 3.010
20 H -0.253 1.253
21 H -0.265 1.265
22 H -0.246 1.246
23 C -0.080 4.080
24 C -0.195 4.195
25 H 0.053 0.947
26 H 0.050 0.950
27 H 0.094 0.906
28 H 0.068 0.932
29 H 0.064 0.936
30 H 0.072 0.928
31 H 0.077 0.923
32 H 0.085 0.915
33 H 0.076 0.924
34 H 0.147 0.853
35 H 0.126 0.874
36 H 0.422 0.578
37 H 0.298 0.702
38 H 0.147 0.853
39 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.297 -12.605 8.926 24.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.338 6.338
3 C -0.012 4.012
4 C -0.152 4.152
5 C -0.020 4.020
6 O -0.238 6.238
7 C 0.081 3.919
8 C -0.169 4.169
9 C -0.109 4.109
10 C -0.004 4.004
11 N -0.822 5.822
12 S 2.816 3.184
13 O -1.031 7.031
14 O -1.022 7.022
15 C -1.165 5.165
16 H 0.140 0.860
17 C -0.143 4.143
18 N -0.526 5.526
19 Si 0.808 3.192
20 H -0.177 1.177
21 H -0.189 1.189
22 H -0.169 1.169
23 C -0.101 4.101
24 C -0.214 4.214
25 H 0.071 0.929
26 H 0.069 0.931
27 H 0.113 0.887
28 H 0.087 0.913
29 H 0.082 0.918
30 H 0.090 0.910
31 H 0.096 0.904
32 H 0.103 0.897
33 H 0.094 0.906
34 H 0.165 0.835
35 H 0.144 0.856
36 H 0.259 0.741
37 H 0.109 0.891
38 H 0.165 0.835
39 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges -17.992 -12.908 8.587 23.750
hybrid contribution -0.668 0.975 -0.484 1.277
sum -18.660 -11.933 8.103 23.585
Atomic orbital electron populations
1.22933 0.79213 1.03842 1.01045 1.87823 1.21661 1.28678 1.95683
1.22381 0.92124 0.84732 1.01933 1.21306 0.93837 0.95715 1.04352
1.22841 0.77286 0.98544 1.03311 1.86031 1.20638 1.28438 1.88680
1.19007 0.91298 0.85333 0.96289 1.20423 0.91335 0.98824 1.06325
1.21423 1.00642 0.91621 0.97176 1.17452 0.91134 0.85063 1.06782
1.53055 1.69375 1.31380 1.28341 1.00265 0.74488 0.71450 0.72246
1.93322 1.78676 1.45723 1.85378 1.93314 1.72973 1.55690 1.80217
1.30780 1.12139 1.60418 1.13156 0.86034 1.26011 0.99028 0.88739
1.00492 1.69991 1.19411 1.39018 1.24200 0.85137 0.77901 0.80168
0.76032 1.17716 1.18923 1.16939 1.21465 0.92319 0.99730 0.96548
1.21383 1.01637 0.90569 1.07811 0.92861 0.93121 0.88717 0.91338
0.91809 0.90958 0.90420 0.89733 0.90571 0.83530 0.85595 0.74089
0.89145 0.83533 0.81840
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 22.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 11.01 113.37 1.25 1.50 16
2 O -0.42 -6.84 10.70 -148.98 -1.59 -8.43 16
3 C 0.06 0.80 5.94 71.98 0.43 1.23 16
4 C -0.11 -1.72 5.95 30.60 0.18 -1.54 16
5 C 0.05 0.87 4.74 71.98 0.34 1.21 16
6 O -0.32 -7.73 10.14 -93.62 -0.95 -8.68 16
7 C 0.13 3.47 6.69 22.49 0.15 3.62 16
8 C -0.15 -4.59 9.98 22.35 0.22 -4.36 16
9 C -0.09 -3.16 9.29 22.39 0.21 -2.95 16
10 C 0.09 3.32 5.80 38.14 0.22 3.54 16
11 N -1.07 -43.01 5.71 -51.27 -0.29 -43.31 16
12 S 2.71 146.42 4.99 -56.49 -0.28 146.14 16
13 O -1.04 -62.22 18.02 -128.00 -2.31 -64.52 16
14 O -1.03 -61.65 17.06 -128.00 -2.18 -63.83 16
15 C -1.03 -56.32 9.66 67.73 0.65 -55.67 16
16 H 0.12 5.93 7.81 -2.91 -0.02 5.91 16
17 C 0.07 3.88 5.46 84.65 0.46 4.35 16
18 N -0.89 -53.45 13.19 21.45 0.28 -53.16 16
19 Si 0.99 40.93 29.54 68.60 2.03 42.96 16
20 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16
21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
22 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16
23 C -0.08 -2.41 9.96 22.39 0.22 -2.19 16
24 C -0.19 -4.91 9.03 22.35 0.20 -4.71 16
25 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16
26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16
27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16
32 H 0.08 1.02 7.66 -2.39 -0.02 1.00 16
33 H 0.08 1.07 7.66 -2.39 -0.02 1.06 16
34 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16
35 H 0.13 4.72 7.93 -2.92 -0.02 4.70 16
36 H 0.42 14.25 8.96 -96.75 -0.87 13.38 16
37 H 0.30 16.02 8.31 -92.71 -0.77 15.25 16
38 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16
39 H 0.16 2.82 6.29 -2.91 -0.02 2.81 16
Total: -1.00 -78.87 351.91 -0.56 -79.43
By element:
Atomic # 1 Polarization: 29.19 SS G_CDS: 0.20 Total: 29.39 kcal
Atomic # 6 Polarization: -60.52 SS G_CDS: 4.54 Total: -55.97 kcal
Atomic # 7 Polarization: -96.46 SS G_CDS: -0.01 Total: -96.47 kcal
Atomic # 8 Polarization: -138.44 SS G_CDS: -7.03 Total: -145.47 kcal
Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal
Atomic # 16 Polarization: 146.42 SS G_CDS: -0.28 Total: 146.14 kcal
Total: -78.87 -0.56 -79.43 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192972398.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -102.339 kcal
(2) G-P(sol) polarization free energy of solvation -78.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.209 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.556 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.426 kcal
(6) G-S(sol) free energy of system = (1) + (5) -181.764 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds