Wall clock time and date at job start Tue Mar 31 2020 11:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35998 * 117.00128 * 2 1 4 4 C 1.38563 * 120.07188 * 359.97230 * 3 2 1 5 5 C 1.38241 * 119.99911 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.14737 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93041 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47586 * 200.00034 * 7 6 5 9 9 C 1.52997 * 109.47450 * 79.99387 * 7 6 5 10 10 N 1.46505 * 109.46677 * 319.99705 * 7 6 5 11 11 S 1.65600 * 120.00147 * 215.00050 * 10 7 6 12 12 O 1.42098 * 106.40579 * 178.54343 * 11 10 7 13 13 O 1.42101 * 106.39846 * 311.46067 * 11 10 7 14 14 C 1.76201 * 107.21661 * 64.99756 * 11 10 7 15 15 H 1.07993 * 120.00307 * 0.02562 * 14 11 10 16 16 C 1.37881 * 119.99573 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00335 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99748 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47136 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47538 * 120.00402 * 18 16 14 21 21 H 1.48506 * 109.47132 * 240.00115 * 18 16 14 22 22 C 1.38249 * 120.14626 * 359.76656 * 6 5 4 23 23 C 1.38562 * 119.99728 * 0.50341 * 22 6 5 24 24 O 1.35994 * 120.07290 * 179.74536 * 23 22 6 25 25 C 1.42903 * 116.99970 * 359.72924 * 24 23 22 26 26 H 1.09002 * 109.47647 * 60.00392 * 1 2 3 27 27 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47425 * 300.00405 * 1 2 3 29 29 H 1.07999 * 119.99757 * 0.05046 * 4 3 2 30 30 H 1.08003 * 119.92491 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.47056 * 60.00314 * 9 7 6 32 32 H 1.08997 * 109.47417 * 180.02562 * 9 7 6 33 33 H 1.09006 * 109.47006 * 300.00582 * 9 7 6 34 34 H 0.97004 * 119.99852 * 34.99746 * 10 7 6 35 35 H 0.97004 * 120.00303 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.00103 * 180.25862 * 22 6 5 37 37 H 1.09002 * 109.47382 * 300.00030 * 25 24 23 38 38 H 1.09001 * 109.46938 * 180.02562 * 25 24 23 39 39 H 1.09004 * 109.46926 * 60.00137 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0006 5 6 1.9224 3.6057 -0.0011 6 6 3.3028 3.6798 -0.0005 7 6 3.9837 5.0243 -0.0005 8 1 5.0094 4.9122 -0.3515 9 6 3.9899 5.5929 1.4198 10 7 3.2606 5.9377 -0.8890 11 16 4.0918 7.0676 -1.7692 12 8 3.1251 7.7629 -2.5445 13 8 4.9719 7.7156 -0.8610 14 6 5.1103 6.1935 -2.9108 15 1 5.0981 5.1137 -2.9284 16 6 5.9227 6.8880 -3.7818 17 7 5.9378 8.2029 -3.7602 18 14 7.0018 5.9614 -4.9926 19 1 6.8027 4.5005 -4.8157 20 1 6.6349 6.3473 -6.3788 21 1 8.4266 6.2997 -4.7454 22 6 4.0602 2.5233 0.0054 23 6 3.4359 1.2863 0.0003 24 8 4.1795 0.1477 0.0010 25 6 5.6003 0.3006 0.0010 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2146 2.3196 -0.0002 30 1 1.3341 4.5115 -0.0011 31 1 4.5278 4.9133 2.0809 32 1 4.4819 6.5655 1.4197 33 1 2.9640 5.7050 1.7708 34 1 2.2950 5.8805 -0.9617 35 1 6.5097 8.6916 -4.3727 36 1 5.1385 2.5839 0.0101 37 1 5.9067 0.8500 -0.8892 38 1 6.0715 -0.6822 0.0011 39 1 5.9064 0.8509 0.8908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:09 Heat of formation + Delta-G solvation = -141.340509 kcal Electronic energy + Delta-G solvation = -24675.321739 eV Core-core repulsion = 20903.362275 eV Total energy + Delta-G solvation = -3771.959464 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -40.59657 -38.46370 -37.78839 -35.27734 -34.72107 -33.93457 -33.07996 -30.57156 -30.13714 -28.66507 -27.30894 -27.01219 -26.13542 -23.34205 -22.16031 -20.70655 -19.08487 -18.49701 -17.50951 -17.10393 -16.58038 -16.18812 -16.09505 -15.45951 -15.28459 -14.83291 -14.77637 -14.49706 -14.05735 -13.85178 -13.45280 -13.29779 -12.97801 -12.54010 -12.49368 -12.18995 -12.00693 -11.82124 -11.50787 -11.24201 -11.23646 -11.23092 -11.15652 -10.84505 -10.75676 -10.59303 -10.29499 -10.20491 -10.12367 -9.26003 -9.08171 -8.68446 -8.53110 -7.73218 -6.70395 -5.31807 1.30537 1.46431 2.35761 3.04794 3.13542 3.20571 3.21767 3.26095 3.73310 4.06456 4.63831 4.71708 4.74105 4.79947 4.93230 5.03240 5.08627 5.11207 5.16757 5.32590 5.36720 5.43237 5.48726 5.54694 5.62827 5.69385 5.82418 5.94304 6.17256 6.18988 6.28992 6.45254 6.57806 6.62900 6.74948 6.92963 7.01705 7.32514 7.56132 7.88910 7.98981 8.89423 10.23773 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.004375 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.142259 B = 6398.907358 C = 7185.890322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.089 3.911 4 C -0.169 4.169 5 C -0.106 4.106 6 C -0.070 4.070 7 C 0.199 3.801 8 H 0.097 0.903 9 C -0.165 4.165 10 N -1.130 6.130 11 S 2.714 3.286 12 O -1.007 7.007 13 O -1.004 7.004 14 C -1.021 5.021 15 H 0.102 0.898 16 C 0.134 3.866 17 N -0.845 5.845 18 Si 0.918 3.082 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.163 4.163 23 C 0.100 3.900 24 O -0.310 6.310 25 C 0.024 3.976 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.401 0.599 35 H 0.290 0.710 36 H 0.139 0.861 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 -15.100 8.702 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.044 3.956 4 C -0.188 4.188 5 C -0.125 4.125 6 C -0.072 4.072 7 C 0.091 3.909 8 H 0.115 0.885 9 C -0.223 4.223 10 N -0.884 5.884 11 S 2.814 3.186 12 O -0.998 6.998 13 O -0.994 6.994 14 C -1.154 5.154 15 H 0.121 0.879 16 C -0.084 4.084 17 N -0.475 5.475 18 Si 0.742 3.258 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.196 1.196 22 C -0.183 4.183 23 C 0.055 3.945 24 O -0.223 6.223 25 C -0.071 4.071 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.232 0.768 35 H 0.100 0.900 36 H 0.156 0.844 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.657 -14.343 8.787 17.746 hybrid contribution 0.317 -0.731 -1.050 1.318 sum -5.340 -15.074 7.737 17.765 Atomic orbital electron populations 1.23024 0.78914 1.03649 1.01208 1.86144 1.20732 1.26127 1.89358 1.18199 0.89088 0.85079 1.03232 1.21005 0.99758 0.91405 1.06634 1.20655 0.93989 0.97034 1.00804 1.19874 0.93657 0.94668 0.98981 1.19419 0.95541 0.84988 0.90937 0.88534 1.22322 1.02234 1.02481 0.95313 1.56189 1.18205 1.53918 1.60046 1.00451 0.73060 0.72033 0.73067 1.93373 1.63523 1.72168 1.70710 1.93360 1.66162 1.73672 1.66205 1.30598 1.41699 1.06101 1.37001 0.87937 1.24730 0.94036 0.94397 0.95255 1.69904 1.35578 1.06635 1.35356 0.86167 0.79382 0.80477 0.79756 1.18636 1.19607 1.19602 1.20977 1.00606 0.90376 1.06317 1.18162 0.88155 0.85954 1.02235 1.86135 1.18674 1.28322 1.89201 1.23086 0.78647 1.03685 1.01674 0.92732 0.88500 0.92859 0.84857 0.85393 0.92179 0.90314 0.92536 0.76779 0.89962 0.84352 0.92356 0.88403 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.09 10.28 -34.24 -0.35 -4.44 16 3 C 0.09 1.25 6.70 -39.12 -0.26 0.99 16 4 C -0.17 -2.12 9.04 -39.46 -0.36 -2.47 16 5 C -0.11 -1.44 9.15 -39.58 -0.36 -1.80 16 6 C -0.07 -1.05 4.96 -104.61 -0.52 -1.57 16 7 C 0.20 3.37 2.97 -69.08 -0.21 3.16 16 8 H 0.10 1.70 7.71 -51.93 -0.40 1.30 16 9 C -0.16 -2.47 9.49 37.16 0.35 -2.12 16 10 N -1.13 -21.90 5.43 -5.88 -0.03 -21.94 16 11 S 2.71 70.54 4.93 -107.50 -0.53 70.01 16 12 O -1.01 -29.30 18.02 -57.17 -1.03 -30.33 16 13 O -1.00 -28.33 17.28 -57.17 -0.99 -29.31 16 14 C -1.02 -27.72 9.58 30.60 0.29 -27.43 16 15 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 16 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 17 N -0.84 -24.68 13.19 55.43 0.73 -23.95 16 18 Si 0.92 20.45 29.54 -169.99 -5.02 15.43 16 19 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 C -0.16 -2.32 8.66 -39.46 -0.34 -2.66 16 23 C 0.10 1.46 6.70 -39.12 -0.26 1.20 16 24 O -0.31 -4.31 10.28 -34.22 -0.35 -4.67 16 25 C 0.02 0.24 9.81 101.05 0.99 1.23 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 30 H 0.13 1.54 6.81 -52.48 -0.36 1.18 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.34 7.64 -51.93 -0.40 0.95 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.40 6.75 7.07 -34.47 -0.24 6.51 16 35 H 0.29 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.14 1.72 6.28 -52.49 -0.33 1.39 16 37 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -36.55 343.74 -7.06 -43.60 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.89 Total: 7.06 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 0.22 Total: -26.65 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.70 Total: -45.88 kcal Atomic # 8 Polarization: -66.03 SS G_CDS: -2.72 Total: -68.75 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 70.54 SS G_CDS: -0.53 Total: 70.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.55 -7.06 -43.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.739 kcal (2) G-P(sol) polarization free energy of solvation -36.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds