Wall clock time and date at job start Tue Mar 31 2020 11:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35998 * 117.00128 * 2 1 4 4 C 1.38563 * 120.07188 * 359.97230 * 3 2 1 5 5 C 1.38241 * 119.99911 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.14737 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93041 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47586 * 200.00034 * 7 6 5 9 9 C 1.52997 * 109.47450 * 79.99387 * 7 6 5 10 10 N 1.46505 * 109.46677 * 319.99705 * 7 6 5 11 11 S 1.65600 * 120.00147 * 215.00050 * 10 7 6 12 12 O 1.42098 * 106.40579 * 178.54343 * 11 10 7 13 13 O 1.42101 * 106.39846 * 311.46067 * 11 10 7 14 14 C 1.76201 * 107.21661 * 64.99756 * 11 10 7 15 15 H 1.07993 * 120.00307 * 0.02562 * 14 11 10 16 16 C 1.37881 * 119.99573 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00335 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99748 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47136 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47538 * 120.00402 * 18 16 14 21 21 H 1.48506 * 109.47132 * 240.00115 * 18 16 14 22 22 C 1.38249 * 120.14626 * 359.76656 * 6 5 4 23 23 C 1.38562 * 119.99728 * 0.50341 * 22 6 5 24 24 O 1.35994 * 120.07290 * 179.74536 * 23 22 6 25 25 C 1.42903 * 116.99970 * 359.72924 * 24 23 22 26 26 H 1.09002 * 109.47647 * 60.00392 * 1 2 3 27 27 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47425 * 300.00405 * 1 2 3 29 29 H 1.07999 * 119.99757 * 0.05046 * 4 3 2 30 30 H 1.08003 * 119.92491 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.47056 * 60.00314 * 9 7 6 32 32 H 1.08997 * 109.47417 * 180.02562 * 9 7 6 33 33 H 1.09006 * 109.47006 * 300.00582 * 9 7 6 34 34 H 0.97004 * 119.99852 * 34.99746 * 10 7 6 35 35 H 0.97004 * 120.00303 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.00103 * 180.25862 * 22 6 5 37 37 H 1.09002 * 109.47382 * 300.00030 * 25 24 23 38 38 H 1.09001 * 109.46938 * 180.02562 * 25 24 23 39 39 H 1.09004 * 109.46926 * 60.00137 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0006 5 6 1.9224 3.6057 -0.0011 6 6 3.3028 3.6798 -0.0005 7 6 3.9837 5.0243 -0.0005 8 1 5.0094 4.9122 -0.3515 9 6 3.9899 5.5929 1.4198 10 7 3.2606 5.9377 -0.8890 11 16 4.0918 7.0676 -1.7692 12 8 3.1251 7.7629 -2.5445 13 8 4.9719 7.7156 -0.8610 14 6 5.1103 6.1935 -2.9108 15 1 5.0981 5.1137 -2.9284 16 6 5.9227 6.8880 -3.7818 17 7 5.9378 8.2029 -3.7602 18 14 7.0018 5.9614 -4.9926 19 1 6.8027 4.5005 -4.8157 20 1 6.6349 6.3473 -6.3788 21 1 8.4266 6.2997 -4.7454 22 6 4.0602 2.5233 0.0054 23 6 3.4359 1.2863 0.0003 24 8 4.1795 0.1477 0.0010 25 6 5.6003 0.3006 0.0010 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2146 2.3196 -0.0002 30 1 1.3341 4.5115 -0.0011 31 1 4.5278 4.9133 2.0809 32 1 4.4819 6.5655 1.4197 33 1 2.9640 5.7050 1.7708 34 1 2.2950 5.8805 -0.9617 35 1 6.5097 8.6916 -4.3727 36 1 5.1385 2.5839 0.0101 37 1 5.9067 0.8500 -0.8892 38 1 6.0715 -0.6822 0.0011 39 1 5.9064 0.8509 0.8908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:08 Heat of formation + Delta-G solvation = -169.674163 kcal Electronic energy + Delta-G solvation = -24676.550378 eV Core-core repulsion = 20903.362275 eV Total energy + Delta-G solvation = -3773.188103 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58785 -39.38478 -38.92909 -37.36611 -36.13360 -36.03383 -35.15622 -31.75492 -31.16959 -29.86381 -28.25128 -28.04775 -27.91266 -24.50612 -23.14400 -21.89392 -21.04130 -19.56691 -19.27257 -18.35782 -18.08201 -17.53603 -17.12514 -16.99257 -16.57980 -16.10860 -15.90217 -15.71402 -15.50167 -15.37580 -15.01265 -14.58347 -14.00965 -13.93832 -13.64169 -13.48333 -13.32980 -13.03746 -13.01427 -12.95470 -12.52465 -12.44545 -12.41319 -12.33549 -12.29121 -12.04144 -12.02692 -11.79640 -11.64726 -11.25945 -10.99550 -10.29377 -9.68322 -8.76392 -8.74470 -7.46926 0.22232 0.37886 0.47092 1.32502 1.34195 1.51059 2.20757 2.36708 2.38523 2.58523 2.67471 3.02608 3.56237 3.77856 3.83293 4.06839 4.17670 4.23643 4.30989 4.41655 4.42315 4.45357 4.47348 4.50818 4.54350 4.68715 4.74082 4.75838 4.77934 4.94592 5.11569 5.16127 5.25893 5.30877 5.39671 5.65094 5.69324 5.91664 6.11997 6.38972 6.62265 6.79790 8.21731 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.004375 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.142259 B = 6398.907358 C = 7185.890322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.081 3.919 4 C -0.164 4.164 5 C -0.111 4.111 6 C -0.084 4.084 7 C 0.194 3.806 8 H 0.084 0.916 9 C -0.162 4.162 10 N -1.114 6.114 11 S 2.722 3.278 12 O -1.046 7.046 13 O -1.035 7.035 14 C -1.040 5.040 15 H 0.117 0.883 16 C 0.073 3.927 17 N -0.893 5.893 18 Si 0.986 3.014 19 H -0.249 1.249 20 H -0.261 1.261 21 H -0.257 1.257 22 C -0.168 4.168 23 C 0.085 3.915 24 O -0.327 6.327 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.163 0.837 30 H 0.141 0.859 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.413 0.587 35 H 0.299 0.701 36 H 0.149 0.851 37 H 0.056 0.944 38 H 0.121 0.879 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 -17.340 8.754 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.035 3.965 4 C -0.182 4.182 5 C -0.130 4.130 6 C -0.086 4.086 7 C 0.087 3.913 8 H 0.102 0.898 9 C -0.221 4.221 10 N -0.873 5.873 11 S 2.823 3.177 12 O -1.037 7.037 13 O -1.025 7.025 14 C -1.173 5.173 15 H 0.135 0.865 16 C -0.140 4.140 17 N -0.524 5.524 18 Si 0.805 3.195 19 H -0.172 1.172 20 H -0.186 1.186 21 H -0.181 1.181 22 C -0.187 4.187 23 C 0.040 3.960 24 O -0.241 6.241 25 C -0.078 4.078 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.180 0.820 30 H 0.159 0.841 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.248 0.752 35 H 0.109 0.891 36 H 0.166 0.834 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.033 -16.582 8.858 19.744 hybrid contribution 0.342 -0.141 -0.985 1.052 sum -5.691 -16.724 7.873 19.340 Atomic orbital electron populations 1.23351 0.76587 1.05486 1.02304 1.86122 1.23217 1.25916 1.89185 1.18482 0.89317 0.85904 1.02748 1.21273 1.01177 0.90388 1.05372 1.20864 0.93577 0.98117 1.00429 1.19692 0.94337 0.93496 1.01038 1.19580 0.94870 0.85751 0.91077 0.89812 1.22291 1.03474 1.01565 0.94741 1.55573 1.18717 1.53358 1.59670 0.99854 0.72594 0.72459 0.72822 1.93310 1.64361 1.74004 1.71989 1.93314 1.67247 1.75153 1.66770 1.30941 1.42007 1.07007 1.37366 0.86486 1.25949 0.95504 0.95262 0.97325 1.69989 1.37022 1.08552 1.36859 0.85156 0.77721 0.79521 0.77136 1.17213 1.18552 1.18107 1.21072 1.01237 0.90170 1.06218 1.18382 0.88843 0.86166 1.02657 1.86112 1.20413 1.28392 1.89214 1.23345 0.76973 1.05375 1.02124 0.91873 0.86495 0.91391 0.81952 0.84111 0.89632 0.92870 0.90811 0.75161 0.89135 0.83355 0.92508 0.86108 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.10 10.28 -79.67 -0.82 -8.92 16 3 C 0.08 2.13 6.70 22.57 0.15 2.28 16 4 C -0.16 -3.70 9.04 22.35 0.20 -3.49 16 5 C -0.11 -2.80 9.15 22.27 0.20 -2.59 16 6 C -0.08 -2.40 4.96 -19.86 -0.10 -2.50 16 7 C 0.19 6.46 2.97 44.24 0.13 6.59 16 8 H 0.08 2.97 7.71 -2.39 -0.02 2.95 16 9 C -0.16 -4.73 9.49 71.98 0.68 -4.05 16 10 N -1.11 -43.07 5.43 -172.52 -0.94 -44.01 16 11 S 2.72 144.24 4.93 -56.49 -0.28 143.96 16 12 O -1.05 -62.35 18.02 -128.00 -2.31 -64.66 16 13 O -1.04 -60.09 17.28 -128.00 -2.21 -62.30 16 14 C -1.04 -56.75 9.58 67.74 0.65 -56.10 16 15 H 0.12 5.82 7.81 -2.91 -0.02 5.80 16 16 C 0.07 4.01 5.46 84.66 0.46 4.47 16 17 N -0.89 -52.98 13.19 21.45 0.28 -52.70 16 18 Si 0.99 41.11 29.54 68.60 2.03 43.14 16 19 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.17 -4.58 8.66 22.35 0.19 -4.38 16 23 C 0.08 2.37 6.70 22.57 0.15 2.52 16 24 O -0.33 -8.74 10.28 -79.61 -0.82 -9.56 16 25 C 0.02 0.30 9.81 113.37 1.11 1.41 16 26 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 27 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 0.76 7.66 -2.39 -0.02 0.75 16 29 H 0.16 2.58 6.30 -2.91 -0.02 2.57 16 30 H 0.14 3.08 6.81 -2.91 -0.02 3.06 16 31 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.05 1.82 7.64 -2.39 -0.02 1.81 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.41 13.69 7.07 -96.74 -0.68 13.01 16 35 H 0.30 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.15 3.56 6.28 -2.91 -0.02 3.54 16 37 H 0.06 1.05 7.68 -2.39 -0.02 1.03 16 38 H 0.12 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.06 7.65 -2.38 -0.02 1.05 16 Total: -1.00 -79.87 343.74 0.29 -79.57 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.40 Total: 29.96 kcal Atomic # 6 Polarization: -59.44 SS G_CDS: 4.95 Total: -54.49 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -0.65 Total: -96.70 kcal Atomic # 8 Polarization: -139.28 SS G_CDS: -6.16 Total: -145.44 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 144.24 SS G_CDS: -0.28 Total: 143.96 kcal Total: -79.87 0.29 -79.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.101 kcal (2) G-P(sol) polarization free energy of solvation -79.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds