Wall clock time and date at job start Tue Mar 31 2020 11:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35898 * 116.99673 * 2 1 4 4 C 1.38771 * 120.02799 * 0.02562 * 3 2 1 5 5 C 1.38180 * 120.05471 * 180.02562 * 4 3 2 6 6 C 1.38174 * 120.10717 * 0.23890 * 5 4 3 7 7 C 1.38772 * 120.05333 * 359.48619 * 6 5 4 8 8 O 1.35896 * 120.02645 * 180.23655 * 7 6 5 9 9 C 1.42899 * 117.00045 * 0.29620 * 8 7 6 10 10 C 1.38630 * 119.94792 * 0.53204 * 7 6 5 11 11 C 1.50695 * 120.05861 * 179.70392 * 10 7 6 12 12 H 1.09001 * 109.47420 * 195.02121 * 11 10 7 13 13 C 1.53004 * 109.47173 * 75.02035 * 11 10 7 14 14 N 1.46506 * 109.47044 * 315.02292 * 11 10 7 15 15 S 1.65600 * 119.99984 * 214.99734 * 14 11 10 16 16 O 1.42097 * 106.40126 * 178.54031 * 15 14 11 17 17 O 1.42097 * 106.40249 * 311.45963 * 15 14 11 18 18 C 1.76202 * 107.21475 * 65.00160 * 15 14 11 19 19 H 1.07998 * 120.00342 * 359.97438 * 18 15 14 20 20 C 1.37884 * 119.99746 * 180.02562 * 18 15 14 21 21 N 1.31515 * 119.99754 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99790 * 179.97438 * 20 18 15 23 23 H 1.48505 * 109.47345 * 89.99890 * 22 20 18 24 24 H 1.48506 * 109.47042 * 209.99304 * 22 20 18 25 25 H 1.48489 * 109.47266 * 329.99565 * 22 20 18 26 26 H 1.09006 * 109.46914 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47003 * 299.99730 * 1 2 3 28 28 H 1.08995 * 109.47326 * 60.00240 * 1 2 3 29 29 H 1.08006 * 119.97403 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.94333 * 179.97438 * 5 4 3 31 31 H 1.08001 * 119.97107 * 179.72267 * 6 5 4 32 32 H 1.09005 * 109.47343 * 60.00545 * 9 8 7 33 33 H 1.09004 * 109.47363 * 179.97438 * 9 8 7 34 34 H 1.08995 * 109.47376 * 299.99970 * 9 8 7 35 35 H 1.09001 * 109.47018 * 300.00332 * 13 11 10 36 36 H 1.08999 * 109.46610 * 60.00327 * 13 11 10 37 37 H 1.09001 * 109.47136 * 180.02562 * 13 11 10 38 38 H 0.97000 * 119.99714 * 34.99775 * 14 11 10 39 39 H 0.97001 * 119.99177 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3751 0.0005 5 6 1.9173 3.6066 0.0000 6 6 3.2970 3.6822 -0.0061 7 6 4.0567 2.5209 -0.0008 8 8 5.4136 2.5959 -0.0019 9 6 5.9911 3.9031 -0.0020 10 6 3.4304 1.2842 -0.0007 11 6 4.2529 0.0215 -0.0018 12 1 3.6194 -0.8247 -0.2679 13 6 4.8449 -0.2028 1.3912 14 7 5.3374 0.1460 -0.9790 15 16 5.8353 -1.1802 -1.8367 16 8 6.8609 -0.7304 -2.7113 17 8 6.0233 -2.2230 -0.8899 18 6 4.4894 -1.6745 -2.8607 19 1 3.5609 -1.1234 -2.8356 20 6 4.6211 -2.7655 -3.6935 21 7 5.7516 -3.4369 -3.7237 22 14 3.1940 -3.2900 -4.7786 23 1 3.2847 -2.5933 -6.0869 24 1 3.2500 -4.7582 -4.9948 25 1 1.9128 -2.9356 -4.1169 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2121 2.3185 0.0014 30 1 1.3278 4.5115 0.0000 31 1 3.7845 4.6459 -0.0110 32 1 5.6687 4.4428 0.8885 33 1 7.0779 3.8202 -0.0025 34 1 5.6672 4.4433 -0.8915 35 1 5.4784 0.6434 1.6572 36 1 4.0380 -0.2954 2.1181 37 1 5.4402 -1.1158 1.3902 38 1 5.7636 1.0052 -1.1235 39 1 5.8444 -4.2042 -4.3098 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192996455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:16 Heat of formation + Delta-G solvation = -137.346829 kcal Electronic energy + Delta-G solvation = -25569.653839 eV Core-core repulsion = 21797.867554 eV Total energy + Delta-G solvation = -3771.786285 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.63499 -38.95546 -36.42267 -35.57931 -34.88506 -33.76194 -32.95721 -30.63295 -29.48845 -28.47141 -27.79539 -26.64978 -25.99459 -23.42427 -21.75953 -20.78201 -18.93137 -18.47604 -17.44483 -16.49827 -16.29267 -16.22708 -15.88905 -15.63992 -15.45013 -14.93599 -14.69835 -14.50957 -13.91337 -13.40103 -13.27747 -13.09469 -12.84669 -12.60389 -12.31954 -11.99879 -11.87374 -11.59176 -11.52307 -11.45107 -11.28545 -11.13309 -11.00393 -10.71107 -10.52302 -10.49207 -10.12268 -10.01728 -9.85430 -9.13550 -8.85759 -8.35735 -8.17432 -8.09200 -6.57843 -5.17367 1.38202 1.47594 2.54490 2.98457 3.13542 3.19775 3.27430 3.69829 3.76329 4.17387 4.69630 4.76105 4.91350 4.96720 4.98960 5.10301 5.13088 5.15487 5.17930 5.30128 5.38092 5.49778 5.51948 5.74286 5.87249 5.98359 6.06374 6.16575 6.21119 6.34309 6.42230 6.46894 6.56067 6.75237 6.89006 7.16377 7.39278 7.45456 7.49220 8.11586 8.29224 9.01987 10.36240 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.006088 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.116608 B = 4598.081477 C = 5767.215118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.172 3.828 4 C -0.245 4.245 5 C -0.048 4.048 6 C -0.246 4.246 7 C 0.175 3.825 8 O -0.304 6.304 9 C 0.025 3.975 10 C -0.144 4.144 11 C 0.215 3.785 12 H 0.100 0.900 13 C -0.161 4.161 14 N -1.125 6.125 15 S 2.716 3.284 16 O -1.011 7.011 17 O -1.007 7.007 18 C -1.018 5.018 19 H 0.102 0.898 20 C 0.134 3.866 21 N -0.847 5.847 22 Si 0.917 3.083 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.263 1.263 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.405 0.595 39 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.822 14.235 8.852 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.126 3.874 4 C -0.264 4.264 5 C -0.066 4.066 6 C -0.264 4.264 7 C 0.129 3.871 8 O -0.216 6.216 9 C -0.070 4.070 10 C -0.147 4.147 11 C 0.107 3.893 12 H 0.118 0.882 13 C -0.220 4.220 14 N -0.882 5.882 15 S 2.815 3.185 16 O -1.002 7.002 17 O -0.997 6.997 18 C -1.151 5.151 19 H 0.120 0.880 20 C -0.084 4.084 21 N -0.478 5.478 22 Si 0.741 3.259 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.187 1.187 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.239 0.761 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.676 13.160 8.903 18.103 hybrid contribution -1.553 0.712 -0.968 1.964 sum -10.229 13.872 7.935 18.975 Atomic orbital electron populations 1.23086 0.78367 1.04172 1.01084 1.86162 1.21256 1.26190 1.87938 1.18414 0.90756 0.84515 0.93758 1.21072 0.99917 0.92100 1.13270 1.20598 0.93657 0.96898 0.95494 1.21076 0.94826 0.97222 1.13323 1.18425 0.82442 0.92569 0.93709 1.86056 1.17190 1.30417 1.87933 1.23121 0.99471 0.83192 1.01231 1.18764 0.90708 0.94301 1.10952 1.19084 0.86903 0.93860 0.89477 0.88181 1.22272 1.01008 1.02965 0.95777 1.56113 1.48746 1.28363 1.55025 1.00337 0.74687 0.70645 0.72790 1.93355 1.58965 1.81620 1.66252 1.93348 1.86994 1.55173 1.64164 1.30622 1.19956 1.24019 1.40530 0.87993 1.24723 0.96488 0.92982 0.94168 1.69912 1.24758 1.17820 1.35269 0.86220 0.81616 0.77973 0.80058 1.19346 1.20041 1.18658 0.88024 0.92747 0.92615 0.85410 0.85796 0.85428 0.92713 0.87985 0.92479 0.92467 0.92687 0.90628 0.76059 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.71 9.33 -19.42 -0.18 -4.89 16 3 C 0.17 2.68 6.66 -39.24 -0.26 2.42 16 4 C -0.24 -3.04 9.04 -39.41 -0.36 -3.40 16 5 C -0.05 -0.54 10.04 -39.63 -0.40 -0.94 16 6 C -0.25 -3.01 9.04 -39.41 -0.36 -3.36 16 7 C 0.17 2.65 6.38 -39.24 -0.25 2.40 16 8 O -0.30 -4.47 6.87 -19.41 -0.13 -4.60 16 9 C 0.03 0.25 9.81 101.05 0.99 1.24 16 10 C -0.14 -2.49 4.97 -104.33 -0.52 -3.01 16 11 C 0.22 4.31 2.71 -69.08 -0.19 4.12 16 12 H 0.10 2.16 6.85 -51.93 -0.36 1.80 16 13 C -0.16 -2.90 9.43 37.16 0.35 -2.55 16 14 N -1.13 -25.20 5.34 -5.88 -0.03 -25.23 16 15 S 2.72 76.52 4.93 -107.50 -0.53 75.99 16 16 O -1.01 -31.25 18.02 -57.17 -1.03 -32.28 16 17 O -1.01 -30.50 17.28 -57.17 -0.99 -31.49 16 18 C -1.02 -29.48 9.58 30.60 0.29 -29.18 16 19 H 0.10 2.76 7.81 -52.49 -0.41 2.35 16 20 C 0.13 3.88 5.46 -17.82 -0.10 3.78 16 21 N -0.85 -25.80 13.19 55.43 0.73 -25.07 16 22 Si 0.92 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 26 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 29 H 0.13 1.24 6.29 -52.48 -0.33 0.91 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.21 6.29 -52.49 -0.33 0.88 16 32 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 35 H 0.06 0.95 7.47 -51.93 -0.39 0.56 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.49 7.64 -51.93 -0.40 1.10 16 38 H 0.40 8.34 6.04 -34.47 -0.21 8.14 16 39 H 0.29 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -37.91 338.56 -6.72 -44.62 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.84 Total: 8.72 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 0.20 Total: -27.20 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.70 Total: -50.30 kcal Atomic # 8 Polarization: -70.92 SS G_CDS: -2.33 Total: -73.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 76.52 SS G_CDS: -0.53 Total: 75.99 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.91 -6.72 -44.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.725 kcal (2) G-P(sol) polarization free energy of solvation -37.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds