Wall clock time and date at job start Tue Mar 31 2020 11:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35898 * 116.99673 * 2 1 4 4 C 1.38771 * 120.02799 * 0.02562 * 3 2 1 5 5 C 1.38180 * 120.05471 * 180.02562 * 4 3 2 6 6 C 1.38174 * 120.10717 * 0.23890 * 5 4 3 7 7 C 1.38772 * 120.05333 * 359.48619 * 6 5 4 8 8 O 1.35896 * 120.02645 * 180.23655 * 7 6 5 9 9 C 1.42899 * 117.00045 * 0.29620 * 8 7 6 10 10 C 1.38630 * 119.94792 * 0.53204 * 7 6 5 11 11 C 1.50695 * 120.05861 * 179.70392 * 10 7 6 12 12 H 1.09001 * 109.47420 * 195.02121 * 11 10 7 13 13 C 1.53004 * 109.47173 * 75.02035 * 11 10 7 14 14 N 1.46506 * 109.47044 * 315.02292 * 11 10 7 15 15 S 1.65600 * 119.99984 * 214.99734 * 14 11 10 16 16 O 1.42097 * 106.40126 * 178.54031 * 15 14 11 17 17 O 1.42097 * 106.40249 * 311.45963 * 15 14 11 18 18 C 1.76202 * 107.21475 * 65.00160 * 15 14 11 19 19 H 1.07998 * 120.00342 * 359.97438 * 18 15 14 20 20 C 1.37884 * 119.99746 * 180.02562 * 18 15 14 21 21 N 1.31515 * 119.99754 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99790 * 179.97438 * 20 18 15 23 23 H 1.48505 * 109.47345 * 89.99890 * 22 20 18 24 24 H 1.48506 * 109.47042 * 209.99304 * 22 20 18 25 25 H 1.48489 * 109.47266 * 329.99565 * 22 20 18 26 26 H 1.09006 * 109.46914 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47003 * 299.99730 * 1 2 3 28 28 H 1.08995 * 109.47326 * 60.00240 * 1 2 3 29 29 H 1.08006 * 119.97403 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.94333 * 179.97438 * 5 4 3 31 31 H 1.08001 * 119.97107 * 179.72267 * 6 5 4 32 32 H 1.09005 * 109.47343 * 60.00545 * 9 8 7 33 33 H 1.09004 * 109.47363 * 179.97438 * 9 8 7 34 34 H 1.08995 * 109.47376 * 299.99970 * 9 8 7 35 35 H 1.09001 * 109.47018 * 300.00332 * 13 11 10 36 36 H 1.08999 * 109.46610 * 60.00327 * 13 11 10 37 37 H 1.09001 * 109.47136 * 180.02562 * 13 11 10 38 38 H 0.97000 * 119.99714 * 34.99775 * 14 11 10 39 39 H 0.97001 * 119.99177 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3751 0.0005 5 6 1.9173 3.6066 0.0000 6 6 3.2970 3.6822 -0.0061 7 6 4.0567 2.5209 -0.0008 8 8 5.4136 2.5959 -0.0019 9 6 5.9911 3.9031 -0.0020 10 6 3.4304 1.2842 -0.0007 11 6 4.2529 0.0215 -0.0018 12 1 3.6194 -0.8247 -0.2679 13 6 4.8449 -0.2028 1.3912 14 7 5.3374 0.1460 -0.9790 15 16 5.8353 -1.1802 -1.8367 16 8 6.8609 -0.7304 -2.7113 17 8 6.0233 -2.2230 -0.8899 18 6 4.4894 -1.6745 -2.8607 19 1 3.5609 -1.1234 -2.8356 20 6 4.6211 -2.7655 -3.6935 21 7 5.7516 -3.4369 -3.7237 22 14 3.1940 -3.2900 -4.7786 23 1 3.2847 -2.5933 -6.0869 24 1 3.2500 -4.7582 -4.9948 25 1 1.9128 -2.9356 -4.1169 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2121 2.3185 0.0014 30 1 1.3278 4.5115 0.0000 31 1 3.7845 4.6459 -0.0110 32 1 5.6687 4.4428 0.8885 33 1 7.0779 3.8202 -0.0025 34 1 5.6672 4.4433 -0.8915 35 1 5.4784 0.6434 1.6572 36 1 4.0380 -0.2954 2.1181 37 1 5.4402 -1.1158 1.3902 38 1 5.7636 1.0052 -1.1235 39 1 5.8444 -4.2042 -4.3098 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192996455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:16 Heat of formation + Delta-G solvation = -167.740560 kcal Electronic energy + Delta-G solvation = -25570.971810 eV Core-core repulsion = 21797.867554 eV Total energy + Delta-G solvation = -3773.104256 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67032 -39.95067 -37.62373 -37.30559 -36.78604 -36.10583 -35.17360 -31.95278 -30.44034 -29.90434 -28.63144 -28.25508 -27.49851 -24.65648 -22.73907 -22.09208 -21.03337 -19.55873 -19.30453 -18.36243 -17.57052 -17.40156 -17.21966 -16.87006 -16.65523 -16.36944 -16.04811 -15.90968 -15.72039 -15.27023 -14.65295 -14.37577 -13.98834 -13.92205 -13.55070 -13.52598 -13.31730 -13.01847 -12.96400 -12.90653 -12.54179 -12.45087 -12.42927 -12.32268 -12.29803 -12.27616 -12.20064 -11.57876 -11.36764 -11.24755 -10.97319 -10.21989 -9.31112 -9.04961 -8.74672 -7.47052 0.27319 0.48748 0.51163 1.31329 1.32923 1.49276 2.04977 2.21296 2.57903 2.71608 2.78654 3.11190 3.63645 3.78737 3.99575 4.07341 4.15266 4.28455 4.39497 4.42928 4.46121 4.47177 4.47896 4.51366 4.58329 4.72469 4.78213 4.80218 4.88822 4.96730 5.12848 5.26608 5.29424 5.35491 5.48161 5.55203 5.64178 5.91242 6.44051 6.48808 6.57461 6.78195 8.22339 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.006088 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.116608 B = 4598.081477 C = 5767.215118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.157 3.843 4 C -0.243 4.243 5 C -0.037 4.037 6 C -0.244 4.244 7 C 0.163 3.837 8 O -0.333 6.333 9 C 0.015 3.985 10 C -0.183 4.183 11 C 0.211 3.789 12 H 0.074 0.926 13 C -0.155 4.155 14 N -1.111 6.111 15 S 2.718 3.282 16 O -1.048 7.048 17 O -1.040 7.040 18 C -1.038 5.038 19 H 0.113 0.887 20 C 0.070 3.930 21 N -0.894 5.894 22 Si 0.989 3.011 23 H -0.254 1.254 24 H -0.258 1.258 25 H -0.248 1.248 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.157 0.843 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.413 0.587 39 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.752 16.633 8.750 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.111 3.889 4 C -0.262 4.262 5 C -0.055 4.055 6 C -0.262 4.262 7 C 0.117 3.883 8 O -0.247 6.247 9 C -0.079 4.079 10 C -0.186 4.186 11 C 0.104 3.896 12 H 0.092 0.908 13 C -0.214 4.214 14 N -0.872 5.872 15 S 2.819 3.181 16 O -1.039 7.039 17 O -1.029 7.029 18 C -1.171 5.171 19 H 0.131 0.869 20 C -0.143 4.143 21 N -0.526 5.526 22 Si 0.807 3.193 23 H -0.178 1.178 24 H -0.182 1.182 25 H -0.171 1.171 26 H 0.128 0.872 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.174 0.826 30 H 0.183 0.817 31 H 0.175 0.825 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.250 0.750 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.586 15.580 8.823 21.327 hybrid contribution -0.655 0.077 -0.853 1.079 sum -12.242 15.657 7.970 21.413 Atomic orbital electron populations 1.23392 0.76074 1.05423 1.02744 1.86115 1.23833 1.26994 1.88116 1.18651 0.90473 0.85584 0.94232 1.21419 1.01250 0.91334 1.12163 1.21131 0.93585 0.97948 0.92820 1.21439 0.95349 0.97331 1.12109 1.18601 0.82873 0.92843 0.93962 1.85981 1.17397 1.33274 1.88012 1.23433 0.99934 0.81694 1.02886 1.18659 0.91467 0.93539 1.14928 1.19136 0.86162 0.95238 0.89079 0.90810 1.22195 1.01516 1.01994 0.95662 1.55568 1.49614 1.27050 1.55011 0.99906 0.74558 0.71084 0.72543 1.93288 1.60725 1.82327 1.67529 1.93295 1.87548 1.57264 1.64835 1.30871 1.20362 1.24857 1.41020 0.86916 1.26036 0.99878 0.92669 0.95681 1.69998 1.27253 1.18750 1.36580 0.85157 0.77561 0.78564 0.78043 1.17771 1.18200 1.17118 0.87192 0.90364 0.91523 0.82551 0.81739 0.82475 0.90439 0.87110 0.91292 0.91246 0.90453 0.93361 0.74965 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.34 -10.36 9.33 -92.40 -0.86 -11.23 16 3 C 0.16 4.73 6.66 22.49 0.15 4.88 16 4 C -0.24 -5.24 9.04 22.38 0.20 -5.04 16 5 C -0.04 -0.67 10.04 22.24 0.22 -0.45 16 6 C -0.24 -5.15 9.04 22.38 0.20 -4.95 16 7 C 0.16 4.76 6.38 22.49 0.14 4.90 16 8 O -0.33 -9.59 6.87 -92.38 -0.63 -10.23 16 9 C 0.01 0.26 9.81 113.37 1.11 1.37 16 10 C -0.18 -6.29 4.97 -19.68 -0.10 -6.39 16 11 C 0.21 8.78 2.71 44.24 0.12 8.90 16 12 H 0.07 3.39 6.85 -2.39 -0.02 3.37 16 13 C -0.15 -5.79 9.43 71.98 0.68 -5.11 16 14 N -1.11 -51.84 5.34 -172.51 -0.92 -52.76 16 15 S 2.72 160.29 4.93 -56.49 -0.28 160.01 16 16 O -1.05 -67.69 18.02 -128.00 -2.31 -70.00 16 17 O -1.04 -66.46 17.28 -128.00 -2.21 -68.67 16 18 C -1.04 -61.70 9.58 67.74 0.65 -61.05 16 19 H 0.11 6.23 7.81 -2.91 -0.02 6.21 16 20 C 0.07 4.10 5.46 84.66 0.46 4.56 16 21 N -0.89 -55.85 13.19 21.45 0.28 -55.57 16 22 Si 0.99 43.31 29.54 68.60 2.03 45.34 16 23 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 26 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.08 1.07 7.66 -2.39 -0.02 1.05 16 28 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 29 H 0.16 2.36 6.29 -2.91 -0.02 2.34 16 30 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.16 2.29 6.29 -2.91 -0.02 2.27 16 32 H 0.08 1.00 7.67 -2.38 -0.02 0.98 16 33 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.07 1.04 7.65 -2.39 -0.02 1.02 16 35 H 0.07 2.37 7.47 -2.39 -0.02 2.35 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.05 2.02 7.64 -2.39 -0.02 2.00 16 38 H 0.41 17.69 6.04 -96.74 -0.58 17.11 16 39 H 0.30 16.66 8.31 -92.71 -0.77 15.89 16 Total: -1.00 -86.29 338.56 0.55 -85.74 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.50 Total: 34.30 kcal Atomic # 6 Polarization: -61.89 SS G_CDS: 4.96 Total: -56.93 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -0.64 Total: -108.33 kcal Atomic # 8 Polarization: -154.11 SS G_CDS: -6.01 Total: -160.12 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 160.29 SS G_CDS: -0.28 Total: 160.01 kcal Total: -86.29 0.55 -85.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.004 kcal (2) G-P(sol) polarization free energy of solvation -86.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds