Wall clock time and date at job start Tue Mar 31 2020 11:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76206 * 102.99478 * 2 1 4 4 C 1.38867 * 120.02413 * 0.02562 * 3 2 1 5 5 C 1.38281 * 119.97577 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.99139 * 179.97438 * 5 4 3 7 7 C 1.38907 * 120.01936 * 0.02562 * 5 4 3 8 8 O 1.36054 * 119.97264 * 179.97438 * 7 5 4 9 9 C 1.42900 * 116.99524 * 174.91065 * 8 7 5 10 10 H 1.09004 * 110.78207 * 321.85529 * 9 8 7 11 11 C 1.55157 * 110.71863 * 198.61546 * 9 8 7 12 12 C 1.55132 * 101.48340 * 205.96894 * 11 9 8 13 13 N 1.47428 * 104.72483 * 37.29682 * 12 11 9 14 14 C 1.36934 * 125.64784 * 155.81580 * 13 12 11 15 15 H 1.07998 * 119.99812 * 179.68917 * 14 13 12 16 16 C 1.38811 * 120.00063 * 359.69353 * 14 13 12 17 17 N 1.31617 * 120.00003 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99601 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46499 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47159 * 299.99471 * 18 16 14 21 21 H 1.48504 * 109.47116 * 59.99947 * 18 16 14 22 22 C 1.47025 * 108.69960 * 335.54991 * 13 12 11 23 23 C 1.38641 * 120.04720 * 0.22779 * 7 5 4 24 24 C 1.38302 * 120.02216 * 359.49209 * 23 7 5 25 25 F 1.35095 * 120.00911 * 180.22710 * 24 23 7 26 26 H 1.08996 * 109.47101 * 60.00480 * 1 2 3 27 27 H 1.09004 * 109.46739 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47364 * 299.99839 * 1 2 3 29 29 H 1.07995 * 120.01323 * 359.95188 * 4 3 2 30 30 H 1.08998 * 111.00295 * 324.20645 * 11 9 8 31 31 H 1.09000 * 111.00643 * 88.02128 * 11 9 8 32 32 H 1.08995 * 110.49945 * 278.44613 * 12 11 9 33 33 H 1.09008 * 110.34066 * 156.05630 * 12 11 9 34 34 H 0.96996 * 119.99592 * 180.02562 * 17 16 14 35 35 H 1.09006 * 109.87822 * 120.70570 * 22 13 12 36 36 H 1.09000 * 109.88090 * 241.71549 * 22 13 12 37 37 H 1.07998 * 119.98698 * 179.72602 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1949 2.6643 0.0005 5 6 1.5070 4.0115 0.0011 6 9 0.5195 4.9334 0.0011 7 6 2.8356 4.4170 0.0005 8 8 3.1415 5.7427 0.0005 9 6 4.5232 6.0895 0.1129 10 1 5.0356 5.4185 0.8025 11 6 4.6838 7.5658 0.5624 12 6 6.0784 7.9160 -0.0199 13 7 6.1301 7.2152 -1.3159 14 6 6.9146 7.5658 -2.3820 15 1 6.8837 6.9822 -3.2902 16 6 7.7496 8.6713 -2.2955 17 7 7.7869 9.3828 -1.1888 18 14 8.8203 9.1491 -3.7497 19 1 9.6128 10.3569 -3.4052 20 1 9.7399 8.0298 -4.0763 21 1 7.9591 9.4410 -4.9238 22 6 5.2046 6.0737 -1.2717 23 6 3.8499 3.4720 -0.0053 24 6 3.5399 2.1241 0.0000 25 9 4.5285 1.2034 -0.0011 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.1620 2.3492 0.0002 30 1 3.9062 8.1935 0.1273 31 1 4.6844 7.6454 1.6495 32 1 6.8685 7.5550 0.6385 33 1 6.1683 8.9924 -0.1669 34 1 8.3702 10.1555 -1.1285 35 1 4.4538 6.1747 -2.0555 36 1 5.7567 5.1434 -1.4052 37 1 4.8825 3.7884 -0.0102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234927217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:12 Heat of formation + Delta-G solvation = -81.436900 kcal Electronic energy + Delta-G solvation = -23733.807515 eV Core-core repulsion = 19853.358152 eV Total energy + Delta-G solvation = -3880.449364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.15287 -49.99655 -41.41686 -39.24513 -37.76346 -34.35902 -32.28473 -31.47600 -30.73090 -29.71435 -29.12494 -26.64909 -24.65817 -23.99721 -22.20545 -21.89717 -19.95967 -19.18949 -19.04800 -18.47680 -17.92894 -17.35266 -16.97922 -16.70288 -16.58581 -16.36806 -15.91907 -15.61419 -15.30297 -15.11795 -15.08963 -14.54652 -14.46853 -14.33518 -13.79887 -13.67163 -13.39684 -13.26705 -13.05431 -12.95542 -12.72178 -12.67012 -12.23363 -12.09277 -11.95892 -11.81655 -11.48085 -11.37809 -10.79160 -10.41693 -9.95835 -8.98114 -8.38438 -7.82600 -5.28514 -0.33896 -0.28434 0.33913 1.34080 1.46433 1.49391 1.55777 1.80551 2.01734 2.46962 2.83991 2.97445 3.28215 3.31673 3.52355 3.59568 3.71897 3.83692 3.94054 4.08648 4.16985 4.29543 4.32952 4.50127 4.54154 4.54999 4.65931 4.72738 4.81504 4.86430 4.90295 4.93388 5.31003 5.40666 5.53073 5.71803 6.07738 6.24985 7.04617 7.69350 8.31442 9.19252 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.003114 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.159825 B = 8990.329294 C = 9639.564416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.112 6.112 3 C -0.138 4.138 4 C -0.090 4.090 5 C 0.070 3.930 6 F -0.131 7.131 7 C 0.115 3.885 8 O -0.299 6.299 9 C 0.082 3.918 10 H 0.102 0.898 11 C -0.120 4.120 12 C 0.154 3.846 13 N -0.623 5.623 14 C -0.247 4.247 15 H 0.079 0.921 16 C -0.061 4.061 17 N -0.946 5.946 18 Si 0.982 3.018 19 H -0.290 1.290 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.115 3.885 23 C -0.201 4.201 24 C 0.139 3.861 25 F -0.127 7.127 26 H 0.098 0.902 27 H 0.132 0.868 28 H 0.101 0.899 29 H 0.185 0.815 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.004 0.996 33 H 0.084 0.916 34 H 0.251 0.749 35 H 0.026 0.974 36 H 0.035 0.965 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 -17.781 5.602 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.130 5.870 3 C -0.251 4.251 4 C -0.114 4.114 5 C 0.048 3.952 6 F -0.109 7.109 7 C 0.066 3.934 8 O -0.211 6.211 9 C 0.026 3.974 10 H 0.120 0.880 11 C -0.159 4.159 12 C 0.029 3.971 13 N -0.350 5.350 14 C -0.375 4.375 15 H 0.097 0.903 16 C -0.254 4.254 17 N -0.595 5.595 18 Si 0.810 3.190 19 H -0.216 1.216 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.011 4.011 23 C -0.222 4.222 24 C 0.114 3.886 25 F -0.105 7.105 26 H 0.117 0.883 27 H 0.150 0.850 28 H 0.119 0.881 29 H 0.202 0.798 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.022 0.978 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.810 -18.527 5.528 24.976 hybrid contribution 0.404 1.586 -0.765 1.807 sum -15.406 -16.941 4.763 23.388 Atomic orbital electron populations 1.23938 0.90831 1.09256 1.07212 1.85876 1.10517 0.98444 1.92183 1.21563 0.93567 1.00054 1.09925 1.21020 1.01037 0.88422 1.00914 1.16913 0.81942 0.86824 1.09486 1.91514 1.59701 1.65439 1.94271 1.18923 0.92436 0.84202 0.97850 1.86263 1.28309 1.19463 1.87103 1.23564 0.78361 0.98646 0.96874 0.88005 1.23059 0.98628 0.92381 1.01810 1.21865 0.90913 0.99912 0.84422 1.44641 1.47363 1.30041 1.12966 1.19388 1.16124 1.09166 0.92833 0.90271 1.25633 1.01416 0.98002 1.00339 1.69968 1.42285 1.20232 1.27062 0.85101 0.78267 0.77223 0.78410 1.21606 1.20357 1.20370 1.21858 0.92516 0.91125 0.95608 1.21120 1.00970 0.90983 1.09149 1.16835 0.83895 0.85528 1.02382 1.91528 1.60391 1.65100 1.93489 0.88266 0.84955 0.88059 0.79834 0.91069 0.88031 0.97811 0.89812 0.93961 0.95550 0.94692 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.15 113.37 1.04 0.02 16 2 S -0.11 -1.88 22.16 -56.49 -1.25 -3.13 16 3 C -0.14 -2.90 6.11 22.62 0.14 -2.77 16 4 C -0.09 -1.69 9.33 22.43 0.21 -1.48 16 5 C 0.07 1.75 7.30 22.44 0.16 1.91 16 6 F -0.13 -3.49 17.11 44.97 0.77 -2.72 16 7 C 0.12 3.31 6.63 22.53 0.15 3.46 16 8 O -0.30 -9.93 9.74 -94.16 -0.92 -10.85 16 9 C 0.08 2.84 2.76 31.78 0.09 2.92 16 10 H 0.10 3.12 6.59 -2.38 -0.02 3.10 16 11 C -0.12 -4.46 6.82 32.06 0.22 -4.24 16 12 C 0.15 7.41 5.91 86.93 0.51 7.92 16 13 N -0.62 -32.23 3.39 -691.52 -2.35 -34.57 16 14 C -0.25 -13.89 10.27 84.03 0.86 -13.03 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 17 N -0.95 -55.44 10.08 21.65 0.22 -55.23 16 18 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.11 4.83 6.51 86.73 0.56 5.39 16 23 C -0.20 -5.45 8.75 22.38 0.20 -5.25 16 24 C 0.14 3.52 7.27 22.48 0.16 3.69 16 25 F -0.13 -3.40 16.75 44.97 0.75 -2.65 16 26 H 0.10 0.54 7.75 -2.39 -0.02 0.52 16 27 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.10 0.50 7.74 -2.39 -0.02 0.48 16 29 H 0.18 2.12 5.87 -2.91 -0.02 2.10 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.08 4.60 5.86 -2.38 -0.01 4.59 16 34 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.03 1.16 8.06 -2.38 -0.02 1.14 16 36 H 0.04 1.42 7.44 -2.39 -0.02 1.40 16 37 H 0.16 4.28 5.31 -2.91 -0.02 4.27 16 Total: -1.00 -65.67 325.72 5.14 -60.53 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.11 Total: 5.66 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 4.77 Total: -4.42 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -2.13 Total: -89.80 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.92 Total: -10.85 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.52 Total: -5.37 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -1.25 Total: -3.13 kcal Total: -65.67 5.14 -60.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234927217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.902 kcal (2) G-P(sol) polarization free energy of solvation -65.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds