Wall clock time and date at job start Tue Mar 31 2020 11:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 103.00085 * 2 1 4 4 C 1.38907 * 120.03742 * 359.97438 * 3 2 1 5 5 C 1.38203 * 120.05612 * 180.02562 * 4 3 2 6 6 C 1.38368 * 120.12948 * 359.96661 * 5 4 3 7 7 F 1.35096 * 119.95831 * 180.02562 * 6 5 4 8 8 C 1.38900 * 120.07804 * 359.97438 * 6 5 4 9 9 O 1.36011 * 120.02796 * 180.02562 * 8 6 5 10 10 C 1.42901 * 116.99958 * 89.99864 * 9 8 6 11 11 H 1.08995 * 110.64370 * 330.69829 * 10 9 8 12 12 C 1.55162 * 110.72018 * 207.55642 * 10 9 8 13 13 C 1.54901 * 101.58337 * 206.13777 * 12 10 9 14 14 N 1.47420 * 104.83552 * 37.00899 * 13 12 10 15 15 C 1.36943 * 125.64979 * 155.83525 * 14 13 12 16 16 H 1.07998 * 119.99809 * 341.72855 * 15 14 13 17 17 C 1.38816 * 119.99777 * 161.72422 * 15 14 13 18 18 N 1.31617 * 119.99630 * 156.25695 * 17 15 14 19 19 Si 1.86800 * 120.00264 * 336.25909 * 17 15 14 20 20 H 1.48504 * 109.46872 * 84.67035 * 19 17 15 21 21 H 1.48497 * 109.47123 * 204.67146 * 19 17 15 22 22 H 1.48499 * 109.47303 * 324.67201 * 19 17 15 23 23 C 1.47324 * 108.73531 * 335.71850 * 14 13 12 24 24 C 1.38682 * 119.94262 * 359.78877 * 8 6 5 25 25 F 1.35100 * 120.06456 * 180.23145 * 24 8 6 26 26 H 1.09001 * 109.46882 * 59.99876 * 1 2 3 27 27 H 1.09002 * 109.46803 * 300.00104 * 1 2 3 28 28 H 1.08995 * 109.47274 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.97661 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.93443 * 179.97438 * 5 4 3 31 31 H 1.09001 * 111.00370 * 324.21108 * 12 10 9 32 32 H 1.08997 * 111.00325 * 88.05963 * 12 10 9 33 33 H 1.09001 * 110.36681 * 155.84945 * 13 12 10 34 34 H 1.09003 * 110.36769 * 278.06011 * 13 12 10 35 35 H 0.96995 * 119.99843 * 179.97438 * 18 17 15 36 36 H 1.09000 * 110.06002 * 241.87220 * 23 14 13 37 37 H 1.08998 * 109.84864 * 120.60981 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6648 -0.0005 5 6 1.5056 4.0115 -0.0011 6 6 2.8278 4.4195 -0.0004 7 9 3.1273 5.7368 -0.0004 8 6 3.8473 3.4762 0.0014 9 8 5.1466 3.8783 0.0026 10 6 5.7649 4.0710 1.2764 11 1 5.0261 4.3656 2.0216 12 6 6.8998 5.1249 1.1821 13 6 7.8191 4.6978 2.3532 14 7 7.7670 3.2245 2.3560 15 6 8.7276 2.3929 2.8670 16 1 9.7259 2.7652 3.0435 17 6 8.4179 1.0714 3.1583 18 7 9.3713 0.1647 3.1939 19 14 6.6483 0.5800 3.4997 20 1 5.9506 0.3187 2.2150 21 1 6.6278 -0.6488 4.3331 22 1 5.9598 1.6797 4.2221 23 6 6.5094 2.7943 1.7207 24 6 3.5393 2.1240 0.0069 25 9 4.5291 1.2044 0.0134 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.1623 2.3493 -0.0005 30 1 0.7147 4.7469 -0.0019 31 1 7.4225 5.0519 0.2284 32 1 6.5118 6.1317 1.3370 33 1 8.8390 5.0410 2.1795 34 1 7.4417 5.0942 3.2959 35 1 9.1550 -0.7586 3.3978 36 1 5.9005 2.2396 2.4346 37 1 6.7272 2.1713 0.8532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234937235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:18 Heat of formation + Delta-G solvation = -55.886831 kcal Electronic energy + Delta-G solvation = -24656.235322 eV Core-core repulsion = 20776.893892 eV Total energy + Delta-G solvation = -3879.341430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.12433 -48.95121 -39.78769 -38.26186 -36.39687 -32.43807 -30.93145 -30.65856 -29.66124 -28.96667 -27.91033 -24.41957 -23.41410 -23.15405 -21.02053 -20.37909 -18.76409 -18.03095 -17.89748 -16.98803 -16.74585 -16.38872 -15.88675 -15.64675 -15.36657 -15.23304 -14.66329 -14.38513 -14.09971 -14.09110 -13.60475 -13.36904 -13.18472 -13.06415 -12.74695 -12.48883 -12.38314 -12.22920 -12.08764 -11.60343 -11.14100 -11.11514 -10.63655 -10.54291 -10.41900 -10.17487 -9.85095 -9.62738 -9.26988 -9.01064 -8.57883 -7.69229 -7.06813 -5.92861 -3.22257 0.45323 0.60194 1.06496 2.00583 2.77101 3.38395 3.43714 3.50355 3.53270 3.70591 4.10323 4.29303 4.54040 4.59117 4.64880 4.66189 4.85878 4.96005 5.09796 5.21523 5.23338 5.32630 5.36260 5.38562 5.49228 5.53982 5.67523 5.80089 5.98342 6.12914 6.17523 6.36538 6.50768 6.66772 6.75164 7.41900 7.69694 8.32862 8.83602 9.70926 10.17335 11.23335 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.005823 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.179717 B = 4807.674306 C = 6524.806031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 S -0.075 6.075 3 C -0.131 4.131 4 C -0.088 4.088 5 C -0.135 4.135 6 C 0.105 3.895 7 F -0.121 7.121 8 C 0.054 3.946 9 O -0.305 6.305 10 C 0.076 3.924 11 H 0.072 0.928 12 C -0.123 4.123 13 C 0.134 3.866 14 N -0.606 5.606 15 C -0.246 4.246 16 H 0.096 0.904 17 C 0.027 3.973 18 N -0.904 5.904 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.302 1.302 22 H -0.282 1.282 23 C 0.102 3.898 24 C 0.131 3.869 25 F -0.101 7.101 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.029 0.971 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.924 6.416 -7.788 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.168 5.832 3 C -0.245 4.245 4 C -0.112 4.112 5 C -0.155 4.155 6 C 0.082 3.918 7 F -0.099 7.099 8 C 0.006 3.994 9 O -0.221 6.221 10 C 0.020 3.980 11 H 0.090 0.910 12 C -0.161 4.161 13 C 0.008 3.992 14 N -0.335 5.335 15 C -0.372 4.372 16 H 0.113 0.887 17 C -0.172 4.172 18 N -0.547 5.547 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.230 1.230 22 H -0.209 1.209 23 C -0.023 4.023 24 C 0.105 3.895 25 F -0.079 7.079 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.131 0.869 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.968 5.153 -7.872 22.983 hybrid contribution -1.734 0.699 0.479 1.930 sum -22.702 5.851 -7.393 24.582 Atomic orbital electron populations 1.23786 0.95045 1.07601 1.05800 1.86098 1.05671 0.99726 1.91733 1.21843 0.94282 0.99578 1.08757 1.20847 0.98433 0.91417 1.00538 1.20985 0.94465 0.96739 1.03342 1.17719 0.92581 0.78028 1.03438 1.91535 1.94040 1.30791 1.93529 1.18518 0.86063 0.89482 1.05370 1.86210 1.19443 1.86109 1.30340 1.23705 0.94392 0.97600 0.82276 0.91022 1.22891 0.95372 0.96547 1.01273 1.21632 0.97828 0.85396 0.94302 1.44725 1.19616 1.00822 1.68317 1.18653 0.89983 0.91053 1.37556 0.88674 1.24922 0.96828 0.95554 0.99935 1.69853 1.32189 1.01519 1.51149 0.87050 0.87177 0.76547 0.78580 1.20260 1.22962 1.20921 1.22147 0.88795 0.94375 0.96970 1.17258 0.84066 0.85820 1.02344 1.91657 1.59367 1.64077 1.92807 0.89444 0.89434 0.86912 0.83663 0.83209 0.89750 0.90620 0.92362 0.95446 0.92659 0.95394 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.15 101.05 0.92 -0.03 16 2 S -0.07 -0.90 22.16 -107.50 -2.38 -3.28 16 3 C -0.13 -1.71 6.11 -39.05 -0.24 -1.95 16 4 C -0.09 -0.84 9.36 -39.35 -0.37 -1.21 16 5 C -0.13 -1.31 10.01 -39.55 -0.40 -1.71 16 6 C 0.11 1.40 7.31 -39.29 -0.29 1.11 16 7 F -0.12 -1.64 17.11 2.25 0.04 -1.60 16 8 C 0.05 0.88 5.61 -39.17 -0.22 0.66 16 9 O -0.30 -5.68 9.51 -19.78 -0.19 -5.87 16 10 C 0.08 1.45 3.48 -24.89 -0.09 1.37 16 11 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 12 C -0.12 -2.11 6.81 -24.58 -0.17 -2.28 16 13 C 0.13 2.70 7.23 -2.54 -0.02 2.68 16 14 N -0.61 -15.51 3.21 -169.83 -0.55 -16.06 16 15 C -0.25 -7.25 10.56 -15.05 -0.16 -7.41 16 16 H 0.10 2.91 8.06 -52.49 -0.42 2.49 16 17 C 0.03 0.81 5.43 -17.43 -0.09 0.72 16 18 N -0.90 -28.73 13.97 55.49 0.78 -27.96 16 19 Si 0.88 23.84 24.39 -169.99 -4.15 19.69 16 20 H -0.28 -7.42 6.83 56.52 0.39 -7.03 16 21 H -0.30 -8.20 7.11 56.52 0.40 -7.79 16 22 H -0.28 -7.57 6.88 56.52 0.39 -7.18 16 23 C 0.10 2.45 4.50 -2.90 -0.01 2.43 16 24 C 0.13 2.19 7.28 -39.14 -0.28 1.90 16 25 F -0.10 -2.03 15.67 2.25 0.04 -2.00 16 26 H 0.09 0.41 7.74 -51.92 -0.40 0.01 16 27 H 0.09 0.45 7.75 -51.92 -0.40 0.05 16 28 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.15 0.87 5.87 -52.49 -0.31 0.56 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 36 H 0.03 0.73 3.55 -51.93 -0.18 0.54 16 37 H 0.06 1.49 7.60 -51.93 -0.39 1.09 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -34.36 325.29 -7.15 -41.51 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -4.23 Total: -5.63 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.41 Total: -3.72 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.23 Total: -44.01 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.19 Total: -5.87 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.07 Total: -3.59 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.15 Total: 19.69 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.38 Total: -3.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.36 -7.15 -41.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234937235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.377 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds