Wall clock time and date at job start Tue Mar 31 2020 11:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 103.00085 * 2 1 4 4 C 1.38907 * 120.03742 * 359.97438 * 3 2 1 5 5 C 1.38203 * 120.05612 * 180.02562 * 4 3 2 6 6 C 1.38368 * 120.12948 * 359.96661 * 5 4 3 7 7 F 1.35096 * 119.95831 * 180.02562 * 6 5 4 8 8 C 1.38900 * 120.07804 * 359.97438 * 6 5 4 9 9 O 1.36011 * 120.02796 * 180.02562 * 8 6 5 10 10 C 1.42901 * 116.99958 * 89.99864 * 9 8 6 11 11 H 1.08995 * 110.64370 * 330.69829 * 10 9 8 12 12 C 1.55162 * 110.72018 * 207.55642 * 10 9 8 13 13 C 1.54901 * 101.58337 * 206.13777 * 12 10 9 14 14 N 1.47420 * 104.83552 * 37.00899 * 13 12 10 15 15 C 1.36943 * 125.64979 * 155.83525 * 14 13 12 16 16 H 1.07998 * 119.99809 * 341.72855 * 15 14 13 17 17 C 1.38816 * 119.99777 * 161.72422 * 15 14 13 18 18 N 1.31617 * 119.99630 * 156.25695 * 17 15 14 19 19 Si 1.86800 * 120.00264 * 336.25909 * 17 15 14 20 20 H 1.48504 * 109.46872 * 84.67035 * 19 17 15 21 21 H 1.48497 * 109.47123 * 204.67146 * 19 17 15 22 22 H 1.48499 * 109.47303 * 324.67201 * 19 17 15 23 23 C 1.47324 * 108.73531 * 335.71850 * 14 13 12 24 24 C 1.38682 * 119.94262 * 359.78877 * 8 6 5 25 25 F 1.35100 * 120.06456 * 180.23145 * 24 8 6 26 26 H 1.09001 * 109.46882 * 59.99876 * 1 2 3 27 27 H 1.09002 * 109.46803 * 300.00104 * 1 2 3 28 28 H 1.08995 * 109.47274 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.97661 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.93443 * 179.97438 * 5 4 3 31 31 H 1.09001 * 111.00370 * 324.21108 * 12 10 9 32 32 H 1.08997 * 111.00325 * 88.05963 * 12 10 9 33 33 H 1.09001 * 110.36681 * 155.84945 * 13 12 10 34 34 H 1.09003 * 110.36769 * 278.06011 * 13 12 10 35 35 H 0.96995 * 119.99843 * 179.97438 * 18 17 15 36 36 H 1.09000 * 110.06002 * 241.87220 * 23 14 13 37 37 H 1.08998 * 109.84864 * 120.60981 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6648 -0.0005 5 6 1.5056 4.0115 -0.0011 6 6 2.8278 4.4195 -0.0004 7 9 3.1273 5.7368 -0.0004 8 6 3.8473 3.4762 0.0014 9 8 5.1466 3.8783 0.0026 10 6 5.7649 4.0710 1.2764 11 1 5.0261 4.3656 2.0216 12 6 6.8998 5.1249 1.1821 13 6 7.8191 4.6978 2.3532 14 7 7.7670 3.2245 2.3560 15 6 8.7276 2.3929 2.8670 16 1 9.7259 2.7652 3.0435 17 6 8.4179 1.0714 3.1583 18 7 9.3713 0.1647 3.1939 19 14 6.6483 0.5800 3.4997 20 1 5.9506 0.3187 2.2150 21 1 6.6278 -0.6488 4.3331 22 1 5.9598 1.6797 4.2221 23 6 6.5094 2.7943 1.7207 24 6 3.5393 2.1240 0.0069 25 9 4.5291 1.2044 0.0134 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.1623 2.3493 -0.0005 30 1 0.7147 4.7469 -0.0019 31 1 7.4225 5.0519 0.2284 32 1 6.5118 6.1317 1.3370 33 1 8.8390 5.0410 2.1795 34 1 7.4417 5.0942 3.2959 35 1 9.1550 -0.7586 3.3978 36 1 5.9005 2.2396 2.4346 37 1 6.7272 2.1713 0.8532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234937235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:17 Heat of formation + Delta-G solvation = -78.729768 kcal Electronic energy + Delta-G solvation = -24657.225866 eV Core-core repulsion = 20776.893892 eV Total energy + Delta-G solvation = -3880.331974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.24131 -50.10534 -41.03342 -39.54503 -37.92642 -34.57570 -32.14335 -31.69592 -31.16526 -29.87407 -29.38694 -26.38237 -24.45883 -24.24650 -22.65161 -22.08958 -19.92024 -19.27094 -19.06211 -18.79231 -17.97583 -17.86465 -17.31899 -16.84359 -16.51762 -16.18235 -16.01134 -15.90334 -15.42768 -15.27301 -14.85788 -14.62149 -14.56355 -14.28117 -14.17743 -14.00499 -13.59204 -13.34987 -13.21459 -13.14310 -12.92157 -12.76213 -12.54608 -12.29218 -11.87879 -11.55714 -11.35964 -11.08685 -10.82788 -10.76349 -10.07596 -9.20572 -8.61043 -8.29109 -5.53729 -0.51186 -0.39319 0.23838 1.22158 1.24824 1.32740 1.33904 1.77707 2.28231 2.32163 2.57890 2.89952 3.14105 3.27301 3.43146 3.51927 3.62283 3.75160 3.80557 4.01437 4.26734 4.28769 4.29105 4.34765 4.47532 4.51342 4.59499 4.62593 4.73054 4.76839 4.87102 4.87512 4.90023 5.19881 5.32113 5.57145 5.99934 6.11808 6.63114 7.42597 7.98379 8.90749 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.005823 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.179717 B = 4807.674306 C = 6524.806031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.150 6.150 3 C -0.126 4.126 4 C -0.068 4.068 5 C -0.107 4.107 6 C 0.100 3.900 7 F -0.122 7.122 8 C 0.021 3.979 9 O -0.318 6.318 10 C 0.085 3.915 11 H 0.089 0.911 12 C -0.107 4.107 13 C 0.126 3.874 14 N -0.627 5.627 15 C -0.237 4.237 16 H 0.074 0.926 17 C -0.028 4.028 18 N -0.946 5.946 19 Si 0.934 3.066 20 H -0.282 1.282 21 H -0.301 1.301 22 H -0.274 1.274 23 C 0.103 3.897 24 C 0.085 3.915 25 F -0.137 7.137 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.194 0.806 30 H 0.198 0.802 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.264 0.736 36 H 0.012 0.988 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.687 8.775 -8.056 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.092 5.908 3 C -0.240 4.240 4 C -0.091 4.091 5 C -0.127 4.127 6 C 0.077 3.923 7 F -0.101 7.101 8 C -0.027 4.027 9 O -0.235 6.235 10 C 0.029 3.971 11 H 0.107 0.893 12 C -0.145 4.145 13 C 0.002 3.998 14 N -0.355 5.355 15 C -0.365 4.365 16 H 0.092 0.908 17 C -0.223 4.223 18 N -0.592 5.592 19 Si 0.765 3.235 20 H -0.210 1.210 21 H -0.229 1.229 22 H -0.200 1.200 23 C -0.022 4.022 24 C 0.060 3.940 25 F -0.115 7.115 26 H 0.130 0.870 27 H 0.125 0.875 28 H 0.146 0.854 29 H 0.211 0.789 30 H 0.215 0.785 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -25.762 7.553 -8.148 28.055 hybrid contribution -0.366 -0.007 0.483 0.606 sum -26.128 7.546 -7.665 28.255 Atomic orbital electron populations 1.23953 0.89002 1.09349 1.07865 1.86419 1.12327 1.00400 1.91641 1.22017 0.93562 1.00433 1.08003 1.21459 0.99609 0.90586 0.97446 1.21523 0.93755 0.97700 0.99748 1.17870 0.93172 0.77391 1.03828 1.91530 1.94220 1.30717 1.93597 1.18859 0.85702 0.90167 1.07945 1.86183 1.21352 1.86188 1.29747 1.23554 0.94990 0.95133 0.83408 0.89328 1.22861 0.93871 0.98056 0.99688 1.21916 0.99292 0.82025 0.96518 1.44889 1.19447 1.03107 1.68046 1.18694 0.90304 0.91605 1.35932 0.90815 1.25473 0.99911 0.95903 1.01021 1.69949 1.33932 1.01844 1.53525 0.86101 0.83189 0.76246 0.77981 1.20952 1.22911 1.20027 1.22092 0.88421 0.96634 0.95090 1.17755 0.84971 0.85699 1.05611 1.91554 1.61069 1.65331 1.93581 0.87046 0.87463 0.85379 0.78938 0.78480 0.90125 0.86140 0.91757 0.93513 0.92735 0.97034 0.95875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.15 113.37 1.04 -0.05 16 2 S -0.15 -3.45 22.16 -56.49 -1.25 -4.71 16 3 C -0.13 -3.11 6.11 22.61 0.14 -2.97 16 4 C -0.07 -0.97 9.36 22.42 0.21 -0.76 16 5 C -0.11 -1.53 10.01 22.29 0.22 -1.30 16 6 C 0.10 2.37 7.31 22.46 0.16 2.53 16 7 F -0.12 -2.92 17.11 44.97 0.77 -2.15 16 8 C 0.02 0.66 5.61 22.53 0.13 0.79 16 9 O -0.32 -11.92 9.51 -93.68 -0.89 -12.81 16 10 C 0.08 3.21 3.48 31.78 0.11 3.32 16 11 H 0.09 3.01 7.95 -2.39 -0.02 2.99 16 12 C -0.11 -3.47 6.81 31.98 0.22 -3.26 16 13 C 0.13 4.95 7.23 86.85 0.63 5.58 16 14 N -0.63 -32.56 3.21 -691.23 -2.22 -34.78 16 15 C -0.24 -14.45 10.56 84.03 0.89 -13.56 16 16 H 0.07 4.70 8.06 -2.91 -0.02 4.68 16 17 C -0.03 -1.74 5.43 84.86 0.46 -1.28 16 18 N -0.95 -62.67 13.97 21.65 0.30 -62.37 16 19 Si 0.93 51.64 24.39 68.60 1.67 53.32 16 20 H -0.28 -15.77 6.83 99.48 0.68 -15.09 16 21 H -0.30 -16.35 7.11 99.48 0.71 -15.65 16 22 H -0.27 -14.54 6.88 99.48 0.68 -13.85 16 23 C 0.10 5.05 4.50 86.67 0.39 5.44 16 24 C 0.09 2.90 7.28 22.56 0.16 3.06 16 25 F -0.14 -5.91 15.67 44.97 0.70 -5.21 16 26 H 0.11 0.42 7.74 -2.39 -0.02 0.40 16 27 H 0.11 0.51 7.75 -2.39 -0.02 0.49 16 28 H 0.13 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.19 0.91 5.87 -2.91 -0.02 0.89 16 30 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.26 16.60 8.31 -92.71 -0.77 15.83 16 36 H 0.01 0.64 3.55 -2.39 -0.01 0.63 16 37 H 0.02 1.28 7.60 -2.39 -0.02 1.26 16 Total: -1.00 -82.15 325.29 4.90 -77.25 By element: Atomic # 1 Polarization: -7.15 SS G_CDS: 1.06 Total: -6.10 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 4.76 Total: -2.45 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -1.92 Total: -97.15 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.89 Total: -12.81 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 1.47 Total: -7.36 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 1.67 Total: 53.32 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.25 Total: -4.71 kcal Total: -82.15 4.90 -77.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234937235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.477 kcal (2) G-P(sol) polarization free energy of solvation -82.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds