Wall clock time and date at job start Tue Mar 31 2020 11:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76205 * 103.00161 * 2 1 4 4 C 1.38911 * 120.03552 * 359.97438 * 3 2 1 5 5 C 1.38195 * 120.05573 * 180.02562 * 4 3 2 6 6 C 1.38367 * 120.13288 * 0.02562 * 5 4 3 7 7 F 1.35101 * 119.96520 * 180.02562 * 6 5 4 8 8 C 1.38907 * 120.07676 * 0.04120 * 6 5 4 9 9 O 1.36008 * 120.03069 * 179.97438 * 8 6 5 10 10 C 1.42896 * 116.99888 * 90.00353 * 9 8 6 11 11 H 1.08993 * 110.88895 * 32.42779 * 10 9 8 12 12 C 1.55156 * 111.00451 * 156.35300 * 10 9 8 13 13 C 1.54336 * 103.02251 * 153.38252 * 12 10 9 14 14 N 1.47022 * 107.26117 * 338.13634 * 13 12 10 15 15 C 1.36935 * 125.64402 * 178.85007 * 14 13 12 16 16 H 1.08005 * 119.99877 * 179.68797 * 15 14 13 17 17 C 1.38811 * 120.00369 * 359.42311 * 15 14 13 18 18 N 1.31617 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47050 * 59.99408 * 19 17 15 21 21 H 1.48496 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46855 * 299.99389 * 19 17 15 23 23 C 1.47418 * 108.70432 * 358.58970 * 14 13 12 24 24 C 1.38685 * 119.93965 * 0.23524 * 8 6 5 25 25 F 1.35100 * 120.06164 * 179.73992 * 24 8 6 26 26 H 1.09001 * 109.46900 * 299.99881 * 1 2 3 27 27 H 1.09001 * 109.47046 * 59.99591 * 1 2 3 28 28 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.97180 * 0.02992 * 4 3 2 30 30 H 1.07995 * 119.93355 * 180.02562 * 5 4 3 31 31 H 1.09000 * 110.71800 * 271.94151 * 12 10 9 32 32 H 1.09003 * 110.71983 * 35.03144 * 12 10 9 33 33 H 1.09003 * 109.99111 * 218.66439 * 13 12 10 34 34 H 1.08995 * 109.78300 * 97.49231 * 13 12 10 35 35 H 0.97004 * 120.00382 * 180.02562 * 18 17 15 36 36 H 1.09001 * 110.36677 * 143.19516 * 23 14 13 37 37 H 1.08999 * 110.36391 * 265.40301 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1951 2.6649 -0.0005 5 6 1.5055 4.0115 -0.0011 6 6 2.8277 4.4196 -0.0016 7 9 3.1273 5.7369 -0.0016 8 6 3.8474 3.4763 -0.0025 9 8 5.1466 3.8784 -0.0035 10 6 5.7674 4.0701 1.2692 11 1 5.3664 3.3741 2.0059 12 6 7.3096 3.9393 1.1611 13 6 7.8153 4.8074 2.3327 14 7 6.7409 5.7522 2.6710 15 6 6.7836 6.6835 3.6740 16 1 5.9404 7.3376 3.8399 17 6 7.9085 6.7830 4.4812 18 7 8.9339 5.9820 4.2828 19 14 7.9666 8.0529 5.8500 20 1 6.8596 7.8002 6.8069 21 1 9.2668 7.9554 6.5608 22 1 7.8195 9.4123 5.2706 23 6 5.6124 5.5353 1.7475 24 6 3.5393 2.1241 -0.0077 25 9 4.5291 1.2046 -0.0139 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.1622 2.3493 -0.0005 30 1 0.7146 4.7469 -0.0011 31 1 7.6183 2.9014 1.2858 32 1 7.6643 4.3338 0.2088 33 1 8.7091 5.3544 2.0326 34 1 8.0366 4.1745 3.1921 35 1 9.7198 6.0513 4.8471 36 1 4.6645 5.6656 2.2696 37 1 5.6766 6.2208 0.9025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234937240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:20 Heat of formation + Delta-G solvation = -64.419778 kcal Electronic energy + Delta-G solvation = -24094.828866 eV Core-core repulsion = 20215.117420 eV Total energy + Delta-G solvation = -3879.711446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.05885 -48.95102 -39.66822 -38.06949 -36.16104 -32.35452 -30.84027 -30.55970 -29.36982 -28.85964 -27.20716 -24.55509 -23.39825 -23.07289 -20.54443 -20.12821 -18.76933 -18.05057 -17.59744 -17.08557 -16.79691 -16.18713 -15.72503 -15.33154 -15.23638 -14.72980 -14.46380 -14.39404 -14.32799 -14.13601 -13.54930 -13.35075 -13.16510 -13.08023 -12.43341 -12.32488 -12.27070 -12.07660 -11.74328 -11.26938 -10.95112 -10.78564 -10.66684 -10.34215 -10.14826 -9.91628 -9.81329 -9.75137 -9.49098 -8.96426 -8.60966 -7.71496 -6.86508 -5.72118 -3.06590 0.51558 0.62780 1.03184 1.95624 2.83127 3.41237 3.44297 3.45759 3.47167 3.78746 4.14583 4.34365 4.50005 4.58012 4.61643 4.62961 5.05217 5.19109 5.25584 5.33278 5.39729 5.44364 5.55558 5.59138 5.65835 5.70422 5.74995 6.08883 6.29787 6.43486 6.47688 6.59642 6.73523 7.52595 7.54084 7.57975 7.80120 8.23167 9.19843 9.79532 10.44605 11.39619 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.003373 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.257802 B = 8298.583026 C = 8668.258674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.083 6.083 3 C -0.130 4.130 4 C -0.090 4.090 5 C -0.133 4.133 6 C 0.110 3.890 7 F -0.114 7.114 8 C 0.060 3.940 9 O -0.310 6.310 10 C 0.072 3.928 11 H 0.072 0.928 12 C -0.135 4.135 13 C 0.179 3.821 14 N -0.603 5.603 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.122 3.878 24 C 0.126 3.874 25 F -0.111 7.111 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.254 0.746 36 H 0.039 0.961 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.422 -11.185 -10.475 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.159 5.841 3 C -0.244 4.244 4 C -0.114 4.114 5 C -0.154 4.154 6 C 0.088 3.912 7 F -0.092 7.092 8 C 0.012 3.988 9 O -0.226 6.226 10 C 0.017 3.983 11 H 0.090 0.910 12 C -0.173 4.173 13 C 0.055 3.945 14 N -0.330 5.330 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.005 4.005 24 C 0.100 3.900 25 F -0.090 7.090 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.130 0.870 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.431 -12.140 -10.448 23.672 hybrid contribution -0.611 1.842 0.877 2.130 sum -18.042 -10.297 -9.572 22.873 Atomic orbital electron populations 1.23771 0.94842 1.07514 1.05915 1.85827 1.06002 1.00127 1.92152 1.21738 0.94226 0.99248 1.09195 1.20828 0.98400 0.91453 1.00714 1.21033 0.94647 0.96757 1.02972 1.17813 0.92580 0.78479 1.02348 1.91587 1.93955 1.30489 1.93212 1.18518 0.86365 0.89339 1.04593 1.86175 1.19026 1.86314 1.31086 1.23989 0.94371 0.98490 0.81497 0.90983 1.23040 0.91402 1.01151 1.01737 1.21209 0.91050 0.90090 0.92192 1.44341 1.12703 1.40562 1.35443 1.19020 1.00914 1.09908 1.05970 0.90371 1.24818 0.96356 0.99524 0.99644 1.69935 1.06133 1.39831 1.41076 0.86158 0.76824 0.80908 0.81623 1.21132 1.21528 1.21084 1.21919 0.92341 0.92462 0.93744 1.17108 0.83773 0.85431 1.03708 1.91557 1.59784 1.64360 1.93261 0.89385 0.89452 0.87003 0.83792 0.83224 0.91309 0.91057 0.93255 0.92987 0.93583 0.94310 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.15 101.05 0.92 0.17 16 2 S -0.08 -0.81 22.16 -107.50 -2.38 -3.19 16 3 C -0.13 -1.50 6.11 -39.05 -0.24 -1.74 16 4 C -0.09 -0.82 9.36 -39.35 -0.37 -1.19 16 5 C -0.13 -1.35 10.01 -39.55 -0.40 -1.75 16 6 C 0.11 1.55 7.31 -39.29 -0.29 1.26 16 7 F -0.11 -1.80 16.49 2.25 0.04 -1.76 16 8 C 0.06 0.95 5.64 -39.17 -0.22 0.73 16 9 O -0.31 -5.74 9.59 -19.77 -0.19 -5.93 16 10 C 0.07 1.43 3.56 -24.58 -0.09 1.35 16 11 H 0.07 1.42 7.99 -51.93 -0.41 1.00 16 12 C -0.13 -2.74 6.68 -24.89 -0.17 -2.91 16 13 C 0.18 4.49 5.38 -3.06 -0.02 4.48 16 14 N -0.60 -16.06 3.39 -170.07 -0.58 -16.64 16 15 C -0.23 -6.58 10.28 -15.06 -0.15 -6.73 16 16 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -27.36 10.31 55.49 0.57 -26.78 16 19 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.12 2.75 6.35 -2.53 -0.02 2.73 16 24 C 0.13 1.83 7.28 -39.14 -0.28 1.55 16 25 F -0.11 -1.77 16.59 2.25 0.04 -1.73 16 26 H 0.09 0.37 7.75 -51.92 -0.40 -0.03 16 27 H 0.09 0.34 7.74 -51.92 -0.40 -0.07 16 28 H 0.11 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.14 0.81 5.87 -52.48 -0.31 0.50 16 30 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.05 1.35 7.54 -51.93 -0.39 0.95 16 34 H 0.05 1.41 7.35 -51.93 -0.38 1.03 16 35 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -32.03 331.16 -8.33 -40.36 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -4.38 Total: -4.27 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.41 Total: -2.36 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.00 Total: -43.42 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.19 Total: -5.93 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.07 Total: -3.49 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.38 Total: -3.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.03 -8.33 -40.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234937240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.059 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds