Wall clock time and date at job start Tue Mar 31 2020 11:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76205 * 103.00161 * 2 1 4 4 C 1.38911 * 120.03552 * 359.97438 * 3 2 1 5 5 C 1.38195 * 120.05573 * 180.02562 * 4 3 2 6 6 C 1.38367 * 120.13288 * 0.02562 * 5 4 3 7 7 F 1.35101 * 119.96520 * 180.02562 * 6 5 4 8 8 C 1.38907 * 120.07676 * 0.04120 * 6 5 4 9 9 O 1.36008 * 120.03069 * 179.97438 * 8 6 5 10 10 C 1.42896 * 116.99888 * 90.00353 * 9 8 6 11 11 H 1.08993 * 110.88895 * 32.42779 * 10 9 8 12 12 C 1.55156 * 111.00451 * 156.35300 * 10 9 8 13 13 C 1.54336 * 103.02251 * 153.38252 * 12 10 9 14 14 N 1.47022 * 107.26117 * 338.13634 * 13 12 10 15 15 C 1.36935 * 125.64402 * 178.85007 * 14 13 12 16 16 H 1.08005 * 119.99877 * 179.68797 * 15 14 13 17 17 C 1.38811 * 120.00369 * 359.42311 * 15 14 13 18 18 N 1.31617 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47050 * 59.99408 * 19 17 15 21 21 H 1.48496 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46855 * 299.99389 * 19 17 15 23 23 C 1.47418 * 108.70432 * 358.58970 * 14 13 12 24 24 C 1.38685 * 119.93965 * 0.23524 * 8 6 5 25 25 F 1.35100 * 120.06164 * 179.73992 * 24 8 6 26 26 H 1.09001 * 109.46900 * 299.99881 * 1 2 3 27 27 H 1.09001 * 109.47046 * 59.99591 * 1 2 3 28 28 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.97180 * 0.02992 * 4 3 2 30 30 H 1.07995 * 119.93355 * 180.02562 * 5 4 3 31 31 H 1.09000 * 110.71800 * 271.94151 * 12 10 9 32 32 H 1.09003 * 110.71983 * 35.03144 * 12 10 9 33 33 H 1.09003 * 109.99111 * 218.66439 * 13 12 10 34 34 H 1.08995 * 109.78300 * 97.49231 * 13 12 10 35 35 H 0.97004 * 120.00382 * 180.02562 * 18 17 15 36 36 H 1.09001 * 110.36677 * 143.19516 * 23 14 13 37 37 H 1.08999 * 110.36391 * 265.40301 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1951 2.6649 -0.0005 5 6 1.5055 4.0115 -0.0011 6 6 2.8277 4.4196 -0.0016 7 9 3.1273 5.7369 -0.0016 8 6 3.8474 3.4763 -0.0025 9 8 5.1466 3.8784 -0.0035 10 6 5.7674 4.0701 1.2692 11 1 5.3664 3.3741 2.0059 12 6 7.3096 3.9393 1.1611 13 6 7.8153 4.8074 2.3327 14 7 6.7409 5.7522 2.6710 15 6 6.7836 6.6835 3.6740 16 1 5.9404 7.3376 3.8399 17 6 7.9085 6.7830 4.4812 18 7 8.9339 5.9820 4.2828 19 14 7.9666 8.0529 5.8500 20 1 6.8596 7.8002 6.8069 21 1 9.2668 7.9554 6.5608 22 1 7.8195 9.4123 5.2706 23 6 5.6124 5.5353 1.7475 24 6 3.5393 2.1241 -0.0077 25 9 4.5291 1.2046 -0.0139 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.1622 2.3493 -0.0005 30 1 0.7146 4.7469 -0.0011 31 1 7.6183 2.9014 1.2858 32 1 7.6643 4.3338 0.2088 33 1 8.7091 5.3544 2.0326 34 1 8.0366 4.1745 3.1921 35 1 9.7198 6.0513 4.8471 36 1 4.6645 5.6656 2.2696 37 1 5.6766 6.2208 0.9025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234937240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:20 Heat of formation + Delta-G solvation = -83.005853 kcal Electronic energy + Delta-G solvation = -24095.634818 eV Core-core repulsion = 20215.117420 eV Total energy + Delta-G solvation = -3880.517399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.16365 -50.05817 -40.91040 -39.38814 -37.79743 -34.36575 -31.86014 -31.59316 -30.99460 -29.63044 -28.96669 -26.54629 -24.37557 -24.16488 -22.20415 -22.06328 -19.89515 -19.12883 -19.02982 -18.66642 -17.89615 -17.39727 -16.81805 -16.70507 -16.44705 -16.20607 -16.04328 -15.78510 -15.34037 -15.14041 -14.82328 -14.53553 -14.24812 -14.10042 -13.98191 -13.68859 -13.55088 -13.22716 -12.99878 -12.99202 -12.77972 -12.55462 -12.22808 -12.10602 -11.87057 -11.67878 -11.34688 -11.04088 -10.75484 -10.70151 -10.01381 -9.00934 -8.50365 -7.89855 -5.28374 -0.45258 -0.33299 0.30697 1.38287 1.44790 1.49102 1.55494 1.83382 2.35452 2.48156 2.64739 3.20098 3.28549 3.51508 3.57963 3.63286 3.74662 3.87832 3.94388 4.09433 4.32856 4.33976 4.41278 4.53462 4.56296 4.63524 4.67481 4.75293 4.79311 4.88613 4.91976 4.94276 5.35011 5.37013 5.52361 5.64276 6.08837 6.21204 7.02383 7.66847 8.31590 9.20591 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.003373 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.257802 B = 8298.583026 C = 8668.258674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.125 6.125 3 C -0.125 4.125 4 C -0.069 4.069 5 C -0.113 4.113 6 C 0.088 3.912 7 F -0.131 7.131 8 C 0.024 3.976 9 O -0.320 6.320 10 C 0.090 3.910 11 H 0.072 0.928 12 C -0.123 4.123 13 C 0.189 3.811 14 N -0.624 5.624 15 C -0.252 4.252 16 H 0.083 0.917 17 C -0.062 4.062 18 N -0.950 5.950 19 Si 0.985 3.015 20 H -0.274 1.274 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.126 3.874 24 C 0.102 3.898 25 F -0.128 7.128 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.191 0.809 30 H 0.187 0.813 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.018 0.982 34 H 0.024 0.976 35 H 0.250 0.750 36 H 0.041 0.959 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.126 -11.716 -10.692 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.118 5.882 3 C -0.239 4.239 4 C -0.093 4.093 5 C -0.134 4.134 6 C 0.065 3.935 7 F -0.110 7.110 8 C -0.023 4.023 9 O -0.236 6.236 10 C 0.034 3.966 11 H 0.090 0.910 12 C -0.161 4.161 13 C 0.064 3.936 14 N -0.352 5.352 15 C -0.381 4.381 16 H 0.101 0.899 17 C -0.255 4.255 18 N -0.598 5.598 19 Si 0.812 3.188 20 H -0.200 1.200 21 H -0.217 1.217 22 H -0.202 1.202 23 C 0.000 4.000 24 C 0.076 3.924 25 F -0.106 7.106 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.208 0.792 30 H 0.205 0.795 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -21.173 -12.691 -10.693 26.902 hybrid contribution 0.334 1.901 0.874 2.119 sum -20.839 -10.790 -9.820 25.439 Atomic orbital electron populations 1.23964 0.89924 1.09308 1.07641 1.86086 1.11382 0.99098 1.91660 1.21989 0.93406 1.00820 1.07674 1.21407 0.99887 0.90356 0.97637 1.21469 0.93558 0.98086 1.00256 1.18146 0.93853 0.77525 1.03939 1.91540 1.94259 1.31571 1.93581 1.18823 0.85413 0.90489 1.07612 1.86138 1.21085 1.86649 1.29728 1.23563 0.94060 0.96420 0.82600 0.91027 1.22863 0.91974 1.01372 0.99901 1.20935 0.90170 0.89704 0.92821 1.44639 1.14270 1.40542 1.35741 1.19427 1.01311 1.10628 1.06696 0.89909 1.25734 0.95961 1.01697 1.02149 1.70156 1.06476 1.41314 1.41890 0.85061 0.76775 0.78424 0.78496 1.19983 1.21690 1.20202 1.21934 0.91124 0.94233 0.92714 1.17343 0.84858 0.84775 1.05447 1.91505 1.60704 1.64769 1.93619 0.87759 0.87467 0.85229 0.79171 0.79544 0.89103 0.90313 0.96379 0.95742 0.94045 0.94050 0.95631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.15 113.37 1.04 0.31 16 2 S -0.12 -2.14 22.16 -56.49 -1.25 -3.39 16 3 C -0.13 -2.61 6.11 22.61 0.14 -2.47 16 4 C -0.07 -0.96 9.36 22.42 0.21 -0.75 16 5 C -0.11 -1.90 10.01 22.29 0.22 -1.67 16 6 C 0.09 2.38 7.31 22.46 0.16 2.54 16 7 F -0.13 -4.11 16.49 44.97 0.74 -3.37 16 8 C 0.02 0.76 5.64 22.54 0.13 0.89 16 9 O -0.32 -12.11 9.59 -93.64 -0.90 -13.01 16 10 C 0.09 3.66 3.56 31.98 0.11 3.77 16 11 H 0.07 2.90 7.99 -2.39 -0.02 2.88 16 12 C -0.12 -5.12 6.68 31.79 0.21 -4.91 16 13 C 0.19 9.90 5.38 86.73 0.47 10.37 16 14 N -0.62 -34.40 3.39 -691.99 -2.35 -36.75 16 15 C -0.25 -14.76 10.28 84.03 0.86 -13.90 16 16 H 0.08 4.62 7.83 -2.91 -0.02 4.59 16 17 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 18 N -0.95 -58.23 10.31 21.65 0.22 -58.01 16 19 Si 0.99 46.45 29.55 68.60 2.03 48.48 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 C 0.13 5.82 6.35 86.86 0.55 6.38 16 24 C 0.10 2.94 7.28 22.56 0.16 3.10 16 25 F -0.13 -4.14 16.59 44.97 0.75 -3.40 16 26 H 0.10 0.28 7.75 -2.39 -0.02 0.26 16 27 H 0.11 0.20 7.74 -2.39 -0.02 0.18 16 28 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.19 0.87 5.87 -2.91 -0.02 0.85 16 30 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.02 1.04 7.54 -2.39 -0.02 1.02 16 34 H 0.02 1.40 7.35 -2.39 -0.02 1.38 16 35 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -73.75 331.16 5.08 -68.68 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: 1.10 Total: 0.27 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 4.74 Total: 0.50 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -2.13 Total: -94.76 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.90 Total: -13.01 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 1.49 Total: -6.76 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -1.25 Total: -3.39 kcal Total: -73.75 5.08 -68.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234937240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.329 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds