Wall clock time and date at job start Tue Mar 31 2020 11:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35663 * 116.99928 * 2 1 4 4 C 1.37958 * 120.19694 * 0.25882 * 3 2 1 5 5 C 1.39693 * 119.92853 * 180.29829 * 4 3 2 6 6 C 1.47896 * 119.83896 * 179.74019 * 5 4 3 7 7 C 1.39698 * 119.95730 * 359.70155 * 6 5 4 8 8 C 1.37831 * 120.04891 * 179.72555 * 7 6 5 9 9 F 1.35105 * 120.02466 * 180.27268 * 8 7 6 10 10 C 1.40101 * 119.95101 * 0.52588 * 8 7 6 11 11 C 1.43204 * 120.04462 * 179.76718 * 10 8 7 12 12 N 9.87250 * 71.10232 * 0.02562 * 2 1 3 13 13 C 1.40094 * 119.90595 * 359.74936 * 10 8 7 14 14 F 1.35097 * 120.02494 * 179.97438 * 13 10 8 15 15 C 1.37833 * 119.95093 * 359.97438 * 13 10 8 16 16 C 1.40136 * 120.31497 * 359.71090 * 5 4 3 17 17 C 1.36074 * 120.39405 * 359.97438 * 16 5 4 18 18 C 1.40950 * 120.06236 * 0.03644 * 17 16 5 19 19 C 1.40783 * 120.15374 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99525 * 208.90369 * 19 18 17 21 21 C 1.40049 * 120.00279 * 28.90244 * 19 18 17 22 22 N 1.30794 * 120.00311 * 197.77585 * 21 19 18 23 23 Si 1.86801 * 119.99930 * 17.78210 * 21 19 18 24 24 H 1.48504 * 109.46839 * 269.99515 * 23 21 19 25 25 H 1.48495 * 109.47266 * 29.99522 * 23 21 19 26 26 H 1.48495 * 109.47158 * 150.00015 * 23 21 19 27 27 H 1.08991 * 109.47728 * 300.00131 * 1 2 3 28 28 H 1.09007 * 109.46710 * 60.00466 * 1 2 3 29 29 H 1.09000 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.03436 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.97790 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.97352 * 180.02562 * 15 13 10 33 33 H 1.08000 * 119.80340 * 179.97438 * 16 5 4 34 34 H 1.07998 * 119.97002 * 180.02562 * 17 16 5 35 35 H 0.96999 * 120.00252 * 355.45037 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2975 2.3684 0.0054 5 6 1.9374 3.6100 -0.0009 6 6 1.1342 4.8519 -0.0010 7 6 -0.2609 4.7803 -0.0010 8 6 -1.0113 5.9364 0.0047 9 9 -2.3606 5.8666 0.0103 10 6 -0.3740 7.1840 -0.0006 11 6 -1.1517 8.3865 0.0002 12 7 -1.7685 9.3404 0.0042 13 6 1.0252 7.2536 -0.0064 14 9 1.6423 8.4553 -0.0121 15 6 1.7718 6.0949 -0.0064 16 6 3.3368 3.6846 -0.0067 17 6 4.0867 2.5491 -0.0056 18 6 3.4579 1.2877 0.0006 19 6 4.2319 0.1117 0.0011 20 1 3.8430 -0.7909 -0.4468 21 6 5.5060 0.1122 0.5825 22 7 6.3576 -0.8372 0.2925 23 14 5.9891 1.4687 1.7724 24 1 6.6043 2.5914 1.0198 25 1 4.7810 1.9545 2.4863 26 1 6.9663 0.9387 2.7570 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2187 2.3162 0.0100 31 1 -0.7519 3.8183 -0.0014 32 1 2.8505 6.1481 -0.0104 33 1 3.8230 4.6489 -0.0119 34 1 5.1647 2.6145 -0.0096 35 1 6.0854 -1.5769 -0.2729 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239921009.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:57 Heat of formation + Delta-G solvation = -69.385461 kcal Electronic energy + Delta-G solvation = -24488.945222 eV Core-core repulsion = 20473.574496 eV Total energy + Delta-G solvation = -4015.370726 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.22482 -50.19422 -40.95294 -39.87215 -38.15316 -37.55688 -35.82175 -33.58801 -31.88573 -31.12100 -30.64762 -28.10949 -27.21747 -24.40180 -24.33604 -22.76695 -22.00116 -20.52393 -20.16268 -19.28996 -18.42885 -17.83271 -17.27025 -17.08046 -16.82425 -16.48331 -16.39725 -16.31636 -15.97656 -15.71328 -15.43048 -14.99441 -14.80482 -14.75798 -14.41615 -14.29002 -14.19618 -13.77220 -13.52825 -13.13948 -13.01363 -12.93323 -12.80374 -12.37961 -12.23294 -12.01870 -11.71685 -11.58519 -11.32790 -10.95946 -10.36574 -9.91279 -9.49977 -9.25865 -8.90649 -6.45816 -0.84208 -0.05758 0.66457 0.92304 1.37008 1.41397 1.56661 1.78232 1.83319 2.19327 2.38902 2.48912 2.60203 2.75675 2.81333 3.19647 3.46239 3.51989 3.71136 4.01779 4.16824 4.32943 4.39244 4.50569 4.56495 4.57601 4.65444 4.73774 4.78116 4.89830 4.94793 5.12487 5.23741 5.40569 5.50858 5.58172 5.67554 5.91722 5.99606 6.21622 6.24800 6.40762 6.61402 7.05879 7.91307 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.003784 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.646789 B = 7397.904217 C = 8745.011986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.344 6.344 3 C 0.005 3.995 4 C -0.134 4.134 5 C -0.175 4.175 6 C 0.101 3.899 7 C -0.177 4.177 8 C 0.193 3.807 9 F -0.126 7.126 10 C -0.144 4.144 11 C 0.274 3.726 12 N -0.445 5.445 13 C 0.193 3.807 14 F -0.125 7.125 15 C -0.174 4.174 16 C -0.057 4.057 17 C -0.244 4.244 18 C 0.072 3.928 19 C -0.507 4.507 20 H 0.049 0.951 21 C 0.008 3.992 22 N -0.828 5.828 23 Si 1.102 2.898 24 H -0.244 1.244 25 H -0.255 1.255 26 H -0.286 1.286 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.143 0.857 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.145 0.855 34 H 0.118 0.882 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.455 8.600 0.738 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.040 4.040 4 C -0.153 4.153 5 C -0.176 4.176 6 C 0.100 3.900 7 C -0.196 4.196 8 C 0.171 3.829 9 F -0.104 7.104 10 C -0.149 4.149 11 C -0.040 4.040 12 N -0.121 5.121 13 C 0.171 3.829 14 F -0.104 7.104 15 C -0.193 4.193 16 C -0.075 4.075 17 C -0.263 4.263 18 C 0.069 3.931 19 C -0.535 4.535 20 H 0.067 0.933 21 C -0.208 4.208 22 N -0.450 5.450 23 Si 0.921 3.079 24 H -0.169 1.169 25 H -0.179 1.179 26 H -0.213 1.213 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.163 0.837 34 H 0.135 0.865 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.071 10.371 1.584 13.237 hybrid contribution -1.317 -1.505 -1.291 2.381 sum -9.388 8.866 0.293 12.916 Atomic orbital electron populations 1.23177 0.78102 1.04436 1.01672 1.85975 1.21946 1.27871 1.90092 1.19217 0.91945 0.84354 1.08451 1.21108 0.99531 0.90887 1.03731 1.17864 0.92325 0.90357 1.17038 1.18468 0.91483 0.91859 0.88186 1.21201 0.93210 0.98000 1.07156 1.16985 0.76747 0.91581 0.97616 1.91556 1.28706 1.97012 1.93162 1.15793 0.90765 0.87019 1.21367 1.25274 0.93199 0.92675 0.92869 1.81205 1.08900 1.11046 1.10912 1.16996 0.87252 0.81113 0.97499 1.91558 1.82509 1.43157 1.93126 1.21284 1.02531 0.88849 1.06650 1.20828 0.92713 0.98178 0.95770 1.20757 0.99489 0.91741 1.14341 1.17603 0.89861 0.93928 0.91748 1.20600 1.01803 0.97772 1.33332 0.93308 1.28569 0.91369 1.03012 0.97805 1.70586 1.35563 1.09831 1.29004 0.83282 0.77528 0.72624 0.74428 1.16921 1.17933 1.21264 0.92059 0.92220 0.87655 0.83999 0.81822 0.81122 0.83746 0.86471 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 16 2 O -0.34 -13.69 9.82 -89.79 -0.88 -14.57 16 3 C 0.00 0.19 6.71 23.01 0.15 0.35 16 4 C -0.13 -4.26 8.40 22.56 0.19 -4.07 16 5 C -0.17 -5.13 5.89 -19.91 -0.12 -5.25 16 6 C 0.10 2.31 5.88 -20.01 -0.12 2.19 16 7 C -0.18 -3.57 9.38 22.53 0.21 -3.36 16 8 C 0.19 4.03 7.27 22.63 0.16 4.20 16 9 F -0.13 -2.77 16.80 44.97 0.76 -2.02 16 10 C -0.14 -3.20 5.76 -21.13 -0.12 -3.32 16 11 C 0.27 7.17 14.60 88.33 1.29 8.46 16 12 N -0.44 -13.26 18.54 19.00 0.35 -12.91 16 13 C 0.19 4.04 7.27 22.62 0.16 4.20 16 14 F -0.13 -2.76 16.80 44.97 0.76 -2.01 16 15 C -0.17 -3.49 9.38 22.53 0.21 -3.28 16 16 C -0.06 -1.79 9.34 22.23 0.21 -1.58 16 17 C -0.24 -9.58 7.19 22.43 0.16 -9.42 16 18 C 0.07 3.27 5.15 -21.18 -0.11 3.16 16 19 C -0.51 -26.03 9.05 23.33 0.21 -25.82 16 20 H 0.05 2.76 7.86 -2.91 -0.02 2.74 16 21 C 0.01 0.37 5.41 85.29 0.46 0.84 16 22 N -0.83 -42.71 13.65 21.85 0.30 -42.41 16 23 Si 1.10 43.18 24.90 68.60 1.71 44.89 16 24 H -0.24 -8.39 6.43 99.48 0.64 -7.75 16 25 H -0.26 -9.69 7.03 99.48 0.70 -8.99 16 26 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 27 H 0.06 1.36 7.65 -2.39 -0.02 1.35 16 28 H 0.06 1.33 7.67 -2.38 -0.02 1.31 16 29 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.14 3.50 4.39 -2.91 -0.01 3.49 16 31 H 0.16 2.80 6.15 -2.91 -0.02 2.78 16 32 H 0.17 2.82 6.15 -2.91 -0.02 2.80 16 33 H 0.15 3.38 6.14 -2.91 -0.02 3.36 16 34 H 0.12 4.53 4.39 -2.91 -0.01 4.51 16 35 H 0.28 14.45 8.73 -92.71 -0.81 13.64 16 Total: -1.00 -57.07 314.85 8.14 -48.93 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.08 Total: 11.16 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 4.07 Total: -31.06 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.65 Total: -55.32 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.88 Total: -14.57 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 1.51 Total: -4.02 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.71 Total: 44.89 kcal Total: -57.07 8.14 -48.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239921009.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.457 kcal (2) G-P(sol) polarization free energy of solvation -57.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds