Wall clock time and date at job start Tue Mar 31 2020 11:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35853 * 117.00194 * 2 1 4 4 C 1.39499 * 119.77222 * 359.97438 * 3 2 1 5 5 C 1.37905 * 120.62678 * 180.02562 * 4 3 2 6 6 C 1.39252 * 120.16062 * 359.97438 * 5 4 3 7 7 C 1.47678 * 120.22549 * 180.02562 * 6 5 4 8 8 C 1.39808 * 119.96738 * 129.72333 * 7 6 5 9 9 C 1.37780 * 120.03883 * 179.72203 * 8 7 6 10 10 F 1.35103 * 120.01920 * 180.27506 * 9 8 7 11 11 C 1.40133 * 119.96252 * 0.55141 * 9 8 7 12 12 C 1.43206 * 120.03753 * 179.74983 * 11 9 8 13 13 N 9.61177 * 146.82900 * 179.97438 * 3 1 2 14 14 C 1.40127 * 119.92398 * 359.72165 * 11 9 8 15 15 F 1.35100 * 120.02205 * 180.02562 * 14 11 9 16 16 C 1.37792 * 119.96036 * 0.02562 * 14 11 9 17 17 C 1.41956 * 119.54879 * 0.26865 * 6 5 4 18 18 C 1.40850 * 120.30505 * 179.70256 * 17 6 5 19 19 H 1.08000 * 119.99663 * 333.11923 * 18 17 6 20 20 C 1.40099 * 119.99755 * 153.11541 * 18 17 6 21 21 N 1.30744 * 120.00166 * 343.97352 * 20 18 17 22 22 Si 1.86804 * 119.99629 * 163.97386 * 20 18 17 23 23 H 1.48504 * 109.47161 * 60.00105 * 22 20 18 24 24 H 1.48497 * 109.47102 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47415 * 300.00257 * 22 20 18 26 26 C 1.37940 * 119.77434 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46817 * 60.00070 * 1 2 3 28 28 H 1.08995 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46789 * 300.00124 * 1 2 3 30 30 H 1.08004 * 119.68419 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.91549 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.97817 * 359.97074 * 8 7 6 33 33 H 1.07992 * 119.98274 * 179.97438 * 16 14 11 34 34 H 0.96999 * 119.99804 * 180.02562 * 21 20 18 35 35 H 1.07997 * 120.09158 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.2815 2.3774 -0.0005 5 6 1.8892 3.6153 -0.0011 6 6 3.2783 3.7128 -0.0006 7 6 3.9306 5.0377 -0.0006 8 6 4.9331 5.3225 0.9313 9 6 5.5467 6.5561 0.9290 10 9 6.5193 6.8290 1.8261 11 6 5.1573 7.5297 -0.0008 12 6 5.7902 8.8143 -0.0012 13 7 6.2922 9.8334 -0.0024 14 6 4.1483 7.2445 -0.9304 15 9 3.7717 8.1814 -1.8279 16 6 3.5405 6.0079 -0.9286 17 6 4.0631 2.5299 -0.0052 18 6 5.4693 2.6099 -0.0111 19 1 5.9592 3.4740 -0.4351 20 6 6.2324 1.5686 0.5331 21 7 5.6693 0.6852 1.3154 22 14 8.0545 1.4425 0.1411 23 1 8.7463 2.6731 0.6019 24 1 8.6297 0.2625 0.8353 25 1 8.2362 1.2922 -1.3250 26 6 3.4236 1.2772 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2035 2.3107 -0.0014 31 1 1.2863 4.5113 -0.0019 32 1 5.2296 4.5737 1.6509 33 1 2.7625 5.7879 -1.6446 34 1 6.1978 -0.0355 1.6924 35 1 4.0097 0.3700 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239927603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:03 Heat of formation + Delta-G solvation = -60.374596 kcal Electronic energy + Delta-G solvation = -24813.595772 eV Core-core repulsion = 20798.615787 eV Total energy + Delta-G solvation = -4014.979985 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.95226 -48.83734 -39.28776 -38.50352 -36.76702 -35.96732 -33.89694 -31.74640 -30.42538 -29.79215 -28.72043 -26.74097 -25.52509 -23.59738 -22.69033 -21.22233 -20.33634 -19.07453 -17.97903 -17.44421 -17.07050 -16.39169 -15.95212 -15.55483 -15.27298 -15.18061 -14.99140 -14.94664 -14.83573 -14.53907 -13.58447 -13.42114 -13.32609 -13.08694 -13.02488 -12.65006 -12.53992 -12.06445 -12.01333 -11.58751 -11.53163 -11.49220 -11.31710 -11.24326 -11.09390 -10.70094 -10.26773 -10.13825 -9.81913 -9.42306 -8.66551 -8.53798 -7.79746 -7.21050 -6.94842 -4.73736 0.67703 1.29040 2.45565 2.61187 2.71600 2.94103 2.96220 3.03961 3.15529 3.71433 3.80985 3.85738 3.94469 4.11154 4.31487 4.59168 5.01870 5.10356 5.30391 5.49214 5.50838 5.58947 5.77512 5.82149 5.87217 5.96735 6.08075 6.19645 6.33063 6.52937 6.62929 6.77941 6.92534 7.02839 7.11647 7.38921 7.46154 7.55553 7.66616 7.72429 8.05207 8.44554 8.49778 8.58971 9.82646 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.005170 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.551607 B = 5414.688818 C = 7348.911902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.328 6.328 3 C 0.141 3.859 4 C -0.314 4.314 5 C -0.025 4.025 6 C -0.234 4.234 7 C 0.122 3.878 8 C -0.149 4.149 9 C 0.172 3.828 10 F -0.128 7.128 11 C -0.143 4.143 12 C 0.267 3.733 13 N -0.423 5.423 14 C 0.176 3.824 15 F -0.130 7.130 16 C -0.183 4.183 17 C 0.163 3.837 18 C -0.443 4.443 19 H 0.089 0.911 20 C 0.078 3.922 21 N -0.767 5.767 22 Si 0.905 3.095 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.259 1.259 26 C -0.191 4.191 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.289 0.711 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.700 1.102 -1.334 5.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.242 6.242 3 C 0.097 3.903 4 C -0.333 4.333 5 C -0.043 4.043 6 C -0.235 4.235 7 C 0.121 3.879 8 C -0.168 4.168 9 C 0.150 3.850 10 F -0.106 7.106 11 C -0.149 4.149 12 C -0.048 4.048 13 N -0.099 5.099 14 C 0.154 3.846 15 F -0.108 7.108 16 C -0.202 4.202 17 C 0.160 3.840 18 C -0.471 4.471 19 H 0.107 0.893 20 C -0.144 4.144 21 N -0.390 5.390 22 Si 0.729 3.271 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.211 4.211 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.100 0.900 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.756 2.330 -1.170 4.572 hybrid contribution 0.431 -0.193 -0.076 0.478 sum -3.325 2.137 -1.246 4.144 Atomic orbital electron populations 1.22800 0.80435 1.02148 1.00660 1.86019 1.19778 1.28912 1.89460 1.19061 0.92479 0.82664 0.96118 1.20421 0.97702 0.92361 1.22829 1.20362 0.92871 0.95673 0.95444 1.18307 0.92291 0.90050 1.22853 1.18594 0.89258 0.92139 0.87952 1.21518 0.98421 0.94667 1.02191 1.17190 0.87612 0.92873 0.87355 1.91530 1.59781 1.94148 1.65127 1.15750 1.04700 0.89782 1.04641 1.25141 0.93397 0.92428 0.93821 1.81158 1.09276 1.11254 1.08192 1.17094 0.93676 0.86659 0.87191 1.91520 1.89941 1.64175 1.65177 1.21311 1.04454 0.91489 1.02913 1.17144 0.92600 0.88770 0.85505 1.19654 0.90949 1.03831 1.32626 0.89281 1.26011 1.01747 0.94077 0.92611 1.69761 1.39096 1.10761 1.19336 0.86361 0.81182 0.79220 0.80349 1.18389 1.19976 1.18368 1.20542 0.89429 0.99072 1.12011 0.93526 0.89740 0.93468 0.88111 0.88253 0.82182 0.83539 0.89993 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 9.80 101.05 0.99 1.48 16 2 O -0.33 -6.36 10.48 -19.28 -0.20 -6.56 16 3 C 0.14 2.97 6.67 -39.22 -0.26 2.71 16 4 C -0.31 -5.93 9.02 -39.23 -0.35 -6.28 16 5 C -0.03 -0.46 9.47 -39.33 -0.37 -0.83 16 6 C -0.23 -4.57 5.51 -104.24 -0.57 -5.14 16 7 C 0.12 2.08 4.91 -104.87 -0.51 1.57 16 8 C -0.15 -2.51 7.96 -39.16 -0.31 -2.82 16 9 C 0.17 2.75 7.26 -39.04 -0.28 2.47 16 10 F -0.13 -2.10 16.80 2.25 0.04 -2.06 16 11 C -0.14 -2.24 5.76 -106.55 -0.61 -2.85 16 12 C 0.27 4.46 14.60 -22.47 -0.33 4.13 16 13 N -0.42 -7.56 18.54 41.84 0.78 -6.79 16 14 C 0.18 2.61 7.26 -39.04 -0.28 2.33 16 15 F -0.13 -1.92 16.80 2.25 0.04 -1.88 16 16 C -0.18 -2.73 9.46 -39.16 -0.37 -3.10 16 17 C 0.16 3.61 5.55 -106.58 -0.59 3.02 16 18 C -0.44 -9.71 7.11 -37.90 -0.27 -9.98 16 19 H 0.09 1.88 6.66 -52.49 -0.35 1.53 16 20 C 0.08 1.67 5.16 -17.32 -0.09 1.58 16 21 N -0.77 -17.25 10.99 55.56 0.61 -16.64 16 22 Si 0.91 16.56 29.59 -169.99 -5.03 11.53 16 23 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 24 H -0.28 -4.96 7.11 56.52 0.40 -4.55 16 25 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 26 C -0.19 -4.38 8.59 -38.78 -0.33 -4.71 16 27 H 0.05 0.59 7.64 -51.93 -0.40 0.20 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 30 H 0.10 1.66 6.25 -52.48 -0.33 1.33 16 31 H 0.10 1.54 8.03 -52.49 -0.42 1.12 16 32 H 0.16 2.85 7.33 -52.49 -0.38 2.47 16 33 H 0.15 1.96 8.03 -52.49 -0.42 1.54 16 34 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 35 H 0.13 3.14 6.26 -52.49 -0.33 2.81 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -23.85 322.92 -6.05 -29.90 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -2.58 Total: 4.06 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -4.56 Total: -16.43 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 1.39 Total: -23.43 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.20 Total: -6.56 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.53 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -23.85 -6.05 -29.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239927603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.470 kcal (2) G-P(sol) polarization free energy of solvation -23.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds