Wall clock time and date at job start Tue Mar 31 2020 11:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35853 * 117.00194 * 2 1 4 4 C 1.39499 * 119.77222 * 359.97438 * 3 2 1 5 5 C 1.37905 * 120.62678 * 180.02562 * 4 3 2 6 6 C 1.39252 * 120.16062 * 359.97438 * 5 4 3 7 7 C 1.47678 * 120.22549 * 180.02562 * 6 5 4 8 8 C 1.39808 * 119.96738 * 129.72333 * 7 6 5 9 9 C 1.37780 * 120.03883 * 179.72203 * 8 7 6 10 10 F 1.35103 * 120.01920 * 180.27506 * 9 8 7 11 11 C 1.40133 * 119.96252 * 0.55141 * 9 8 7 12 12 C 1.43206 * 120.03753 * 179.74983 * 11 9 8 13 13 N 9.61177 * 146.82900 * 179.97438 * 3 1 2 14 14 C 1.40127 * 119.92398 * 359.72165 * 11 9 8 15 15 F 1.35100 * 120.02205 * 180.02562 * 14 11 9 16 16 C 1.37792 * 119.96036 * 0.02562 * 14 11 9 17 17 C 1.41956 * 119.54879 * 0.26865 * 6 5 4 18 18 C 1.40850 * 120.30505 * 179.70256 * 17 6 5 19 19 H 1.08000 * 119.99663 * 333.11923 * 18 17 6 20 20 C 1.40099 * 119.99755 * 153.11541 * 18 17 6 21 21 N 1.30744 * 120.00166 * 343.97352 * 20 18 17 22 22 Si 1.86804 * 119.99629 * 163.97386 * 20 18 17 23 23 H 1.48504 * 109.47161 * 60.00105 * 22 20 18 24 24 H 1.48497 * 109.47102 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47415 * 300.00257 * 22 20 18 26 26 C 1.37940 * 119.77434 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46817 * 60.00070 * 1 2 3 28 28 H 1.08995 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46789 * 300.00124 * 1 2 3 30 30 H 1.08004 * 119.68419 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.91549 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.97817 * 359.97074 * 8 7 6 33 33 H 1.07992 * 119.98274 * 179.97438 * 16 14 11 34 34 H 0.96999 * 119.99804 * 180.02562 * 21 20 18 35 35 H 1.07997 * 120.09158 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.2815 2.3774 -0.0005 5 6 1.8892 3.6153 -0.0011 6 6 3.2783 3.7128 -0.0006 7 6 3.9306 5.0377 -0.0006 8 6 4.9331 5.3225 0.9313 9 6 5.5467 6.5561 0.9290 10 9 6.5193 6.8290 1.8261 11 6 5.1573 7.5297 -0.0008 12 6 5.7902 8.8143 -0.0012 13 7 6.2922 9.8334 -0.0024 14 6 4.1483 7.2445 -0.9304 15 9 3.7717 8.1814 -1.8279 16 6 3.5405 6.0079 -0.9286 17 6 4.0631 2.5299 -0.0052 18 6 5.4693 2.6099 -0.0111 19 1 5.9592 3.4740 -0.4351 20 6 6.2324 1.5686 0.5331 21 7 5.6693 0.6852 1.3154 22 14 8.0545 1.4425 0.1411 23 1 8.7463 2.6731 0.6019 24 1 8.6297 0.2625 0.8353 25 1 8.2362 1.2922 -1.3250 26 6 3.4236 1.2772 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2035 2.3107 -0.0014 31 1 1.2863 4.5113 -0.0019 32 1 5.2296 4.5737 1.6509 33 1 2.7625 5.7879 -1.6446 34 1 6.1978 -0.0355 1.6924 35 1 4.0097 0.3700 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239927603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:03 Heat of formation + Delta-G solvation = -69.238681 kcal Electronic energy + Delta-G solvation = -24813.980148 eV Core-core repulsion = 20798.615787 eV Total energy + Delta-G solvation = -4015.364361 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.17305 -50.14788 -40.72190 -39.87676 -38.19288 -37.38064 -35.45181 -33.13132 -31.85593 -31.20371 -30.12897 -28.05175 -27.01290 -24.97888 -23.99889 -22.74376 -21.79308 -20.38529 -19.49649 -18.77333 -18.36206 -17.92642 -17.23253 -16.92092 -16.67914 -16.44384 -16.34940 -16.30201 -16.22525 -15.85497 -14.98107 -14.78067 -14.76068 -14.50968 -14.38145 -14.12159 -13.87778 -13.49005 -13.38396 -13.00920 -12.89362 -12.81269 -12.72007 -12.62490 -12.49256 -12.11761 -11.74162 -11.58886 -11.30039 -10.99207 -10.00256 -9.81510 -9.37489 -8.77738 -8.47860 -6.37128 -0.64262 0.02273 0.94085 1.08138 1.37172 1.43363 1.50905 1.56415 1.78367 2.19881 2.48965 2.54468 2.63341 2.72200 2.81952 3.28111 3.68494 3.72662 3.83605 4.20619 4.35073 4.53105 4.55340 4.60061 4.61885 4.64763 4.80655 4.82982 5.00884 5.06846 5.13778 5.29743 5.47007 5.55011 5.64917 5.91625 5.92807 6.10704 6.15195 6.21599 6.46766 6.87206 6.92714 7.04895 8.27196 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.005170 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.551607 B = 5414.688818 C = 7348.911902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.135 3.865 4 C -0.313 4.313 5 C -0.024 4.024 6 C -0.234 4.234 7 C 0.112 3.888 8 C -0.149 4.149 9 C 0.176 3.824 10 F -0.130 7.130 11 C -0.134 4.134 12 C 0.276 3.724 13 N -0.441 5.441 14 C 0.187 3.813 15 F -0.124 7.124 16 C -0.161 4.161 17 C 0.142 3.858 18 C -0.466 4.466 19 H 0.091 0.909 20 C 0.046 3.954 21 N -0.804 5.804 22 Si 0.960 3.040 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.260 1.260 26 C -0.228 4.228 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.170 0.830 34 H 0.290 0.710 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 2.598 -2.113 6.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.091 3.909 4 C -0.332 4.332 5 C -0.042 4.042 6 C -0.235 4.235 7 C 0.111 3.889 8 C -0.168 4.168 9 C 0.154 3.846 10 F -0.109 7.109 11 C -0.140 4.140 12 C -0.038 4.038 13 N -0.117 5.117 14 C 0.165 3.835 15 F -0.102 7.102 16 C -0.180 4.180 17 C 0.139 3.861 18 C -0.494 4.494 19 H 0.109 0.891 20 C -0.173 4.173 21 N -0.428 5.428 22 Si 0.782 3.218 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.185 1.185 26 C -0.248 4.248 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.188 0.812 34 H 0.101 0.899 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.203 3.830 -1.952 6.749 hybrid contribution 0.707 -0.580 0.149 0.926 sum -4.497 3.250 -1.803 5.834 Atomic orbital electron populations 1.23158 0.77496 1.04494 1.01714 1.85984 1.22870 1.28576 1.89249 1.19229 0.92239 0.84057 0.95406 1.20757 0.99085 0.91725 1.21677 1.20767 0.92613 0.96872 0.93949 1.18515 0.93022 0.90265 1.21731 1.18480 0.89741 0.91752 0.88959 1.21352 0.98605 0.94619 1.02213 1.17068 0.87508 0.92623 0.87436 1.91527 1.59929 1.94120 1.65301 1.15753 1.04599 0.89107 1.04506 1.25212 0.92969 0.92362 0.93258 1.81176 1.09837 1.11925 1.08811 1.16953 0.93068 0.86649 0.86790 1.91547 1.89791 1.63966 1.64891 1.21376 1.04087 0.90460 1.02086 1.17419 0.93205 0.89545 0.85927 1.19765 0.91343 1.04431 1.33878 0.89145 1.26622 1.04792 0.93679 0.92164 1.69833 1.40320 1.11727 1.20902 0.85550 0.77338 0.79123 0.79838 1.18189 1.19650 1.18473 1.20476 0.90576 0.98618 1.15133 0.92121 0.86986 0.92543 0.85216 0.84615 0.83721 0.81211 0.89895 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.80 113.37 1.11 1.78 16 2 O -0.35 -13.63 10.48 -91.90 -0.96 -14.60 16 3 C 0.14 5.71 6.67 22.50 0.15 5.86 16 4 C -0.31 -11.18 9.02 22.50 0.20 -10.98 16 5 C -0.02 -0.82 9.47 22.43 0.21 -0.60 16 6 C -0.23 -8.91 5.51 -19.62 -0.11 -9.02 16 7 C 0.11 3.62 4.91 -20.02 -0.10 3.53 16 8 C -0.15 -4.90 7.96 22.54 0.18 -4.72 16 9 C 0.18 5.37 7.26 22.62 0.16 5.54 16 10 F -0.13 -4.15 16.80 44.97 0.76 -3.40 16 11 C -0.13 -3.88 5.76 -21.11 -0.12 -4.00 16 12 C 0.28 8.65 14.60 88.33 1.29 9.94 16 13 N -0.44 -15.00 18.54 19.01 0.35 -14.65 16 14 C 0.19 4.97 7.26 22.62 0.16 5.14 16 15 F -0.12 -3.22 16.80 44.97 0.76 -2.46 16 16 C -0.16 -4.28 9.46 22.55 0.21 -4.07 16 17 C 0.14 6.44 5.55 -21.13 -0.12 6.32 16 18 C -0.47 -21.08 7.11 23.36 0.17 -20.91 16 19 H 0.09 3.89 6.66 -2.91 -0.02 3.87 16 20 C 0.05 2.05 5.16 85.31 0.44 2.49 16 21 N -0.80 -38.15 10.99 21.85 0.24 -37.91 16 22 Si 0.96 34.87 29.59 68.60 2.03 36.90 16 23 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 24 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 25 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 26 C -0.23 -10.88 8.59 22.79 0.20 -10.69 16 27 H 0.06 1.38 7.64 -2.39 -0.02 1.36 16 28 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.34 7.65 -2.39 -0.02 1.32 16 30 H 0.13 3.80 6.25 -2.91 -0.02 3.78 16 31 H 0.14 3.59 8.03 -2.91 -0.02 3.56 16 32 H 0.15 5.26 7.33 -2.91 -0.02 5.24 16 33 H 0.17 3.77 8.03 -2.91 -0.02 3.74 16 34 H 0.29 12.69 8.29 -92.71 -0.77 11.92 16 35 H 0.10 5.25 6.26 -2.91 -0.02 5.24 16 Total: -1.00 -52.68 322.92 8.39 -44.30 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.17 Total: 16.21 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.05 Total: -24.39 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.59 Total: -52.56 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.96 Total: -14.60 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.51 Total: -5.86 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -52.68 8.39 -44.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239927603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.943 kcal (2) G-P(sol) polarization free energy of solvation -52.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds