Wall clock time and date at job start Tue Mar 31 2020 11:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35954 * 117.00329 * 2 1 4 4 C 1.38379 * 119.97230 * 0.23476 * 3 2 1 5 5 C 1.39558 * 119.86721 * 180.22869 * 4 3 2 6 6 C 1.47982 * 120.08662 * 179.79186 * 5 4 3 7 7 C 1.39999 * 119.49766 * 359.72478 * 6 5 4 8 8 C 1.35994 * 121.19404 * 179.97438 * 7 6 5 9 9 C 1.41057 * 120.10358 * 0.02562 * 8 7 6 10 10 C 1.40428 * 120.48255 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00113 * 205.39649 * 10 9 8 12 12 C 1.40290 * 120.00176 * 25.39814 * 10 9 8 13 13 N 1.30641 * 120.00352 * 16.91297 * 12 10 9 14 14 Si 1.86799 * 119.99850 * 196.91115 * 12 10 9 15 15 H 1.48496 * 109.47628 * 265.17912 * 14 12 10 16 16 H 1.48501 * 109.47372 * 25.18335 * 14 12 10 17 17 H 1.48507 * 109.47111 * 145.17820 * 14 12 10 18 18 C 1.46645 * 119.02956 * 0.24790 * 9 8 7 19 19 C 1.43199 * 120.56781 * 179.72388 * 18 9 8 20 20 N 9.58452 * 94.55264 * 359.93462 * 2 1 3 21 21 C 1.39082 * 118.86846 * 359.46974 * 18 9 8 22 22 C 1.39637 * 119.83098 * 359.51650 * 5 4 3 23 23 C 1.38120 * 119.95421 * 0.25159 * 22 5 4 24 24 F 1.35103 * 119.93310 * 179.97438 * 23 22 5 25 25 C 1.38725 * 120.13079 * 0.02562 * 23 22 5 26 26 F 1.35098 * 119.91758 * 179.97438 * 25 23 22 27 27 H 1.08997 * 109.47548 * 59.99928 * 1 2 3 28 28 H 1.09007 * 109.46889 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47252 * 299.99623 * 1 2 3 30 30 H 1.08002 * 120.06912 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.40563 * 359.97438 * 7 6 5 32 32 H 1.07997 * 119.95007 * 179.97438 * 8 7 6 33 33 H 0.96998 * 120.00110 * 179.97438 * 13 12 10 34 34 H 1.08000 * 120.10057 * 180.24150 * 21 18 9 35 35 H 1.07999 * 120.02016 * 180.27552 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2921 2.3715 0.0049 5 6 1.9280 3.6138 0.0001 6 6 1.1262 4.8576 0.0006 7 6 -0.2714 4.7768 0.0002 8 6 -1.0417 5.8976 0.0012 9 6 -0.4368 7.1719 0.0022 10 6 -1.2246 8.3344 0.0027 11 1 -0.8280 9.2556 -0.3977 12 6 -2.5268 8.2991 0.5234 13 7 -2.8954 7.3112 1.2948 14 14 -3.7337 9.6647 0.1138 15 1 -3.7077 10.6877 1.1898 16 1 -3.3511 10.2931 -1.1761 17 1 -5.1022 9.0988 0.0019 18 6 1.0267 7.2648 -0.0034 19 6 1.6753 8.5415 -0.0086 20 7 2.1897 9.5543 -0.0109 21 6 1.7741 6.0919 0.0017 22 6 3.3228 3.6802 0.0005 23 6 4.0685 2.5176 0.0005 24 9 5.4180 2.5823 0.0004 25 6 3.4346 1.2837 -0.0005 26 9 4.1683 0.1492 -0.0011 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2135 2.3159 0.0092 31 1 -0.7465 3.8069 -0.0010 32 1 -2.1183 5.8119 0.0004 33 1 -3.7956 7.2871 1.6551 34 1 2.8531 6.1372 0.0016 35 1 3.8181 4.6399 0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240661989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:17 Heat of formation + Delta-G solvation = -64.144775 kcal Electronic energy + Delta-G solvation = -24336.546041 eV Core-core repulsion = 20321.402569 eV Total energy + Delta-G solvation = -4015.143472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.15895 -48.19890 -39.94616 -38.32181 -36.90484 -35.28565 -34.41958 -31.55833 -30.59807 -29.57451 -29.10220 -27.41747 -25.72606 -23.21632 -22.74906 -21.68688 -20.82701 -18.55912 -17.99661 -17.41115 -17.17510 -16.64111 -16.33623 -16.04577 -15.49807 -15.41191 -15.04813 -14.59147 -14.56180 -14.10998 -14.02555 -13.75948 -13.20903 -12.97763 -12.65110 -12.58758 -12.28033 -12.18704 -12.02373 -11.85095 -11.66225 -11.49757 -11.41355 -11.27443 -11.20202 -10.91516 -10.59197 -10.23038 -9.97341 -9.75908 -8.74529 -8.32400 -8.01557 -7.56687 -7.38521 -4.97936 0.98345 1.29459 2.01384 2.44380 2.75133 2.78031 2.85056 3.02237 3.46983 3.60620 3.72820 4.12740 4.18611 4.22966 4.61843 4.85308 4.88967 5.08791 5.12347 5.20122 5.25020 5.32561 5.40622 5.47610 5.71354 5.85548 6.11581 6.14846 6.26857 6.33756 6.41475 6.55135 6.74300 6.82419 6.95042 7.20688 7.34901 7.38843 7.52410 7.59548 7.93299 8.10135 8.26179 8.62682 9.40799 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.003544 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.571488 B = 7899.461512 C = 9422.022702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.136 3.864 4 C -0.220 4.220 5 C 0.085 3.915 6 C -0.217 4.217 7 C -0.051 4.051 8 C -0.165 4.165 9 C 0.154 3.846 10 C -0.403 4.403 11 H 0.092 0.908 12 C 0.072 3.928 13 N -0.744 5.744 14 Si 0.919 3.081 15 H -0.262 1.262 16 H -0.253 1.253 17 H -0.267 1.267 18 C -0.185 4.185 19 C 0.297 3.703 20 N -0.500 5.500 21 C 0.011 3.989 22 C -0.193 4.193 23 C 0.119 3.881 24 F -0.131 7.131 25 C -0.014 4.014 26 F -0.134 7.134 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.296 0.704 34 H 0.107 0.893 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 -9.786 -1.388 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.090 3.910 4 C -0.238 4.238 5 C 0.084 3.916 6 C -0.218 4.218 7 C -0.070 4.070 8 C -0.184 4.184 9 C 0.148 3.852 10 C -0.428 4.428 11 H 0.110 0.890 12 C -0.154 4.154 13 N -0.365 5.365 14 Si 0.741 3.259 15 H -0.187 1.187 16 H -0.176 1.176 17 H -0.191 1.191 18 C -0.190 4.190 19 C -0.013 4.013 20 N -0.178 5.178 21 C -0.010 4.010 22 C -0.212 4.212 23 C 0.099 3.901 24 F -0.109 7.109 25 C -0.035 4.035 26 F -0.113 7.113 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.768 -8.544 -1.230 8.666 hybrid contribution -0.635 0.017 0.011 0.635 sum -1.402 -8.527 -1.219 8.727 Atomic orbital electron populations 1.23138 0.77724 1.04004 1.02074 1.86082 1.21870 1.25854 1.88588 1.18499 0.89718 0.85540 0.97244 1.21208 1.00620 0.90362 1.11652 1.18493 0.91086 0.92693 0.89335 1.17587 0.92492 0.89621 1.22126 1.20450 0.92174 0.97565 0.96797 1.20909 0.99788 0.90850 1.06828 1.18542 0.88247 0.93389 0.85047 1.19984 0.96430 0.97428 1.28969 0.89008 1.26252 0.99147 0.97633 0.92363 1.69695 1.20596 1.28555 1.17632 0.86061 0.78590 0.80258 0.80975 1.18690 1.17586 1.19122 1.16757 0.92281 0.85193 1.24809 1.25698 0.91654 0.92631 0.91362 1.81051 1.10800 1.11378 1.14611 1.20668 0.97385 0.90648 0.92262 1.21011 0.93780 0.96923 1.09503 1.17160 0.77096 0.92414 1.03434 1.91499 1.28431 1.97078 1.93893 1.16618 0.86620 0.81586 1.18683 1.91447 1.76566 1.48200 1.95095 0.92131 0.88145 0.92082 0.83849 0.88374 0.85449 0.89228 0.87523 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.30 10.35 -19.60 -0.20 -4.50 16 3 C 0.14 2.06 6.69 -39.24 -0.26 1.80 16 4 C -0.22 -3.21 8.40 -39.04 -0.33 -3.54 16 5 C 0.08 1.36 5.88 -104.89 -0.62 0.75 16 6 C -0.22 -3.87 5.88 -104.81 -0.62 -4.48 16 7 C -0.05 -0.91 9.30 -39.73 -0.37 -1.28 16 8 C -0.16 -3.32 8.62 -39.32 -0.34 -3.66 16 9 C 0.15 3.34 5.73 -104.61 -0.60 2.74 16 10 C -0.40 -8.83 8.55 -37.99 -0.32 -9.16 16 11 H 0.09 2.04 7.38 -52.49 -0.39 1.65 16 12 C 0.07 1.45 5.16 -17.29 -0.09 1.36 16 13 N -0.74 -15.13 10.96 55.57 0.61 -14.52 16 14 Si 0.92 15.33 29.59 -169.99 -5.03 10.30 16 15 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 16 H -0.25 -4.29 7.11 56.52 0.40 -3.89 16 17 H -0.27 -4.26 7.11 56.52 0.40 -3.85 16 18 C -0.18 -3.86 5.93 -104.27 -0.62 -4.48 16 19 C 0.30 6.45 14.29 -22.48 -0.32 6.13 16 20 N -0.50 -11.30 18.54 41.83 0.78 -10.52 16 21 C 0.01 0.21 9.12 -38.84 -0.35 -0.14 16 22 C -0.19 -3.01 9.39 -39.10 -0.37 -3.38 16 23 C 0.12 1.90 7.29 -39.44 -0.29 1.61 16 24 F -0.13 -2.09 17.17 2.25 0.04 -2.05 16 25 C -0.01 -0.23 7.32 -39.11 -0.29 -0.52 16 26 F -0.13 -2.28 17.01 2.25 0.04 -2.24 16 27 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 28 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 30 H 0.14 1.82 4.35 -52.49 -0.23 1.59 16 31 H 0.10 1.49 6.08 -52.48 -0.32 1.17 16 32 H 0.13 2.58 6.20 -52.49 -0.33 2.26 16 33 H 0.30 5.33 8.29 -40.82 -0.34 4.99 16 34 H 0.11 1.76 6.13 -52.49 -0.32 1.44 16 35 H 0.14 2.06 6.14 -52.49 -0.32 1.74 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -24.16 320.34 -5.99 -30.15 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -2.26 Total: 3.58 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -4.79 Total: -15.02 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 1.38 Total: -25.04 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.20 Total: -4.50 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.08 Total: -4.29 kcal Atomic # 14 Polarization: 15.33 SS G_CDS: -5.03 Total: 10.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -24.16 -5.99 -30.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240661989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.995 kcal (2) G-P(sol) polarization free energy of solvation -24.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds