Wall clock time and date at job start Tue Mar 31 2020 11:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35954 * 117.00329 * 2 1 4 4 C 1.38379 * 119.97230 * 0.23476 * 3 2 1 5 5 C 1.39558 * 119.86721 * 180.22869 * 4 3 2 6 6 C 1.47982 * 120.08662 * 179.79186 * 5 4 3 7 7 C 1.39999 * 119.49766 * 359.72478 * 6 5 4 8 8 C 1.35994 * 121.19404 * 179.97438 * 7 6 5 9 9 C 1.41057 * 120.10358 * 0.02562 * 8 7 6 10 10 C 1.40428 * 120.48255 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00113 * 205.39649 * 10 9 8 12 12 C 1.40290 * 120.00176 * 25.39814 * 10 9 8 13 13 N 1.30641 * 120.00352 * 16.91297 * 12 10 9 14 14 Si 1.86799 * 119.99850 * 196.91115 * 12 10 9 15 15 H 1.48496 * 109.47628 * 265.17912 * 14 12 10 16 16 H 1.48501 * 109.47372 * 25.18335 * 14 12 10 17 17 H 1.48507 * 109.47111 * 145.17820 * 14 12 10 18 18 C 1.46645 * 119.02956 * 0.24790 * 9 8 7 19 19 C 1.43199 * 120.56781 * 179.72388 * 18 9 8 20 20 N 9.58452 * 94.55264 * 359.93462 * 2 1 3 21 21 C 1.39082 * 118.86846 * 359.46974 * 18 9 8 22 22 C 1.39637 * 119.83098 * 359.51650 * 5 4 3 23 23 C 1.38120 * 119.95421 * 0.25159 * 22 5 4 24 24 F 1.35103 * 119.93310 * 179.97438 * 23 22 5 25 25 C 1.38725 * 120.13079 * 0.02562 * 23 22 5 26 26 F 1.35098 * 119.91758 * 179.97438 * 25 23 22 27 27 H 1.08997 * 109.47548 * 59.99928 * 1 2 3 28 28 H 1.09007 * 109.46889 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47252 * 299.99623 * 1 2 3 30 30 H 1.08002 * 120.06912 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.40563 * 359.97438 * 7 6 5 32 32 H 1.07997 * 119.95007 * 179.97438 * 8 7 6 33 33 H 0.96998 * 120.00110 * 179.97438 * 13 12 10 34 34 H 1.08000 * 120.10057 * 180.24150 * 21 18 9 35 35 H 1.07999 * 120.02016 * 180.27552 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2921 2.3715 0.0049 5 6 1.9280 3.6138 0.0001 6 6 1.1262 4.8576 0.0006 7 6 -0.2714 4.7768 0.0002 8 6 -1.0417 5.8976 0.0012 9 6 -0.4368 7.1719 0.0022 10 6 -1.2246 8.3344 0.0027 11 1 -0.8280 9.2556 -0.3977 12 6 -2.5268 8.2991 0.5234 13 7 -2.8954 7.3112 1.2948 14 14 -3.7337 9.6647 0.1138 15 1 -3.7077 10.6877 1.1898 16 1 -3.3511 10.2931 -1.1761 17 1 -5.1022 9.0988 0.0019 18 6 1.0267 7.2648 -0.0034 19 6 1.6753 8.5415 -0.0086 20 7 2.1897 9.5543 -0.0109 21 6 1.7741 6.0919 0.0017 22 6 3.3228 3.6802 0.0005 23 6 4.0685 2.5176 0.0005 24 9 5.4180 2.5823 0.0004 25 6 3.4346 1.2837 -0.0005 26 9 4.1683 0.1492 -0.0011 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2135 2.3159 0.0092 31 1 -0.7465 3.8069 -0.0010 32 1 -2.1183 5.8119 0.0004 33 1 -3.7956 7.2871 1.6551 34 1 2.8531 6.1372 0.0016 35 1 3.8181 4.6399 0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240661989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:16 Heat of formation + Delta-G solvation = -73.143021 kcal Electronic energy + Delta-G solvation = -24336.936235 eV Core-core repulsion = 20321.402569 eV Total energy + Delta-G solvation = -4015.533666 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.42978 -49.48583 -41.10664 -39.69624 -38.19550 -36.96308 -35.88495 -32.96975 -32.01178 -30.85333 -30.45784 -28.37596 -27.13504 -24.57430 -24.11931 -23.02173 -22.21689 -19.87877 -19.45028 -18.74883 -18.41226 -17.92840 -17.52384 -17.39942 -16.84841 -16.45499 -16.37534 -15.83705 -15.70117 -15.57479 -15.32517 -15.15270 -14.62479 -14.60632 -13.96480 -13.90959 -13.65496 -13.56264 -13.44105 -13.28608 -13.05554 -12.86746 -12.65050 -12.52102 -12.38683 -12.17172 -11.87039 -11.70852 -11.43534 -11.21228 -10.11031 -9.56101 -9.47631 -9.02233 -8.83182 -6.55999 -0.31020 0.08646 0.45408 1.02068 1.38191 1.46923 1.52716 2.00347 2.02585 2.11387 2.22496 2.55912 2.74392 2.99462 3.36606 3.48076 3.65029 3.67366 3.80678 4.08936 4.18993 4.31800 4.43619 4.46296 4.50409 4.79019 4.83334 4.86290 4.89390 5.00158 5.00984 5.08119 5.35741 5.45168 5.57037 5.76864 5.85225 6.03547 6.07641 6.23589 6.39408 6.55341 6.72476 6.94588 7.96950 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.003544 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.571488 B = 7899.461512 C = 9422.022702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.140 3.860 4 C -0.204 4.204 5 C 0.073 3.927 6 C -0.205 4.205 7 C -0.043 4.043 8 C -0.179 4.179 9 C 0.136 3.864 10 C -0.440 4.440 11 H 0.074 0.926 12 C 0.047 3.953 13 N -0.766 5.766 14 Si 0.976 3.024 15 H -0.266 1.266 16 H -0.262 1.262 17 H -0.249 1.249 18 C -0.208 4.208 19 C 0.303 3.697 20 N -0.527 5.527 21 C 0.008 3.992 22 C -0.188 4.188 23 C 0.113 3.887 24 F -0.133 7.133 25 C -0.024 4.024 26 F -0.141 7.141 27 H 0.072 0.928 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.167 0.833 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.306 0.694 34 H 0.125 0.875 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -11.769 -1.411 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.093 3.907 4 C -0.223 4.223 5 C 0.072 3.928 6 C -0.207 4.207 7 C -0.062 4.062 8 C -0.198 4.198 9 C 0.130 3.870 10 C -0.466 4.466 11 H 0.092 0.908 12 C -0.177 4.177 13 N -0.387 5.387 14 Si 0.796 3.204 15 H -0.191 1.191 16 H -0.186 1.186 17 H -0.173 1.173 18 C -0.214 4.214 19 C -0.005 4.005 20 N -0.206 5.206 21 C -0.012 4.012 22 C -0.207 4.207 23 C 0.092 3.908 24 F -0.112 7.112 25 C -0.045 4.045 26 F -0.120 7.120 27 H 0.091 0.909 28 H 0.144 0.856 29 H 0.089 0.911 30 H 0.184 0.816 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.694 -10.554 -1.250 10.762 hybrid contribution -0.234 0.329 0.021 0.404 sum -1.928 -10.226 -1.229 10.478 Atomic orbital electron populations 1.23530 0.75247 1.06225 1.03092 1.86093 1.24384 1.25084 1.88173 1.18499 0.89344 0.86326 0.96556 1.21388 1.01711 0.89443 1.09746 1.18431 0.91151 0.92502 0.90697 1.17776 0.92739 0.89997 1.20162 1.20760 0.92172 0.98377 0.94850 1.20918 0.99860 0.90951 1.08035 1.18823 0.88702 0.94188 0.85304 1.20026 0.98080 0.97138 1.31388 0.90753 1.26775 0.99635 0.99441 0.91837 1.69670 1.21516 1.29600 1.17931 0.85235 0.77452 0.77785 0.79899 1.19056 1.18574 1.17285 1.16937 0.92392 0.85463 1.26591 1.25956 0.91125 0.92728 0.90736 1.81026 1.11726 1.11892 1.15973 1.20886 0.98356 0.90248 0.91750 1.21108 0.93733 0.97271 1.08578 1.17199 0.77083 0.92512 1.03970 1.91494 1.28605 1.97091 1.93964 1.16928 0.87415 0.81453 1.18687 1.91429 1.76845 1.48564 1.95138 0.90949 0.85597 0.91083 0.81573 0.85069 0.85838 0.88169 0.85682 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.93 10.35 -93.04 -0.96 -8.89 16 3 C 0.14 3.81 6.69 22.49 0.15 3.97 16 4 C -0.20 -5.24 8.40 22.62 0.19 -5.05 16 5 C 0.07 2.14 5.88 -20.04 -0.12 2.02 16 6 C -0.21 -6.87 5.88 -19.99 -0.12 -6.99 16 7 C -0.04 -1.44 9.30 22.17 0.21 -1.23 16 8 C -0.18 -7.08 8.62 22.44 0.19 -6.89 16 9 C 0.14 5.98 5.73 -19.86 -0.11 5.87 16 10 C -0.44 -19.97 8.55 23.30 0.20 -19.77 16 11 H 0.07 3.50 7.38 -2.91 -0.02 3.48 16 12 C 0.05 1.90 5.16 85.37 0.44 2.34 16 13 N -0.77 -31.06 10.96 21.89 0.24 -30.82 16 14 Si 0.98 31.50 29.59 68.60 2.03 33.53 16 15 H -0.27 -8.64 7.11 99.48 0.71 -7.93 16 16 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 17 H -0.25 -7.27 7.11 99.48 0.71 -6.56 16 18 C -0.21 -8.77 5.93 -19.63 -0.12 -8.89 16 19 C 0.30 13.52 14.29 88.33 1.26 14.78 16 20 N -0.53 -24.40 18.54 19.00 0.35 -24.04 16 21 C 0.01 0.30 9.12 22.75 0.21 0.50 16 22 C -0.19 -5.43 9.39 22.58 0.21 -5.22 16 23 C 0.11 3.38 7.29 22.36 0.16 3.54 16 24 F -0.13 -4.07 17.17 44.97 0.77 -3.29 16 25 C -0.02 -0.74 7.32 22.58 0.17 -0.57 16 26 F -0.14 -4.57 17.01 44.97 0.77 -3.80 16 27 H 0.07 0.92 7.67 -2.39 -0.02 0.90 16 28 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.07 0.93 7.65 -2.39 -0.02 0.91 16 30 H 0.17 3.44 4.35 -2.91 -0.01 3.42 16 31 H 0.13 3.45 6.08 -2.91 -0.02 3.43 16 32 H 0.12 4.95 6.20 -2.91 -0.02 4.94 16 33 H 0.31 10.83 8.29 -92.71 -0.77 10.07 16 34 H 0.13 3.96 6.13 -2.91 -0.02 3.94 16 35 H 0.15 4.08 6.14 -2.91 -0.02 4.06 16 Total: -1.00 -52.20 320.34 8.42 -43.78 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.19 Total: 13.83 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.04 Total: -20.29 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.59 Total: -54.86 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.96 Total: -8.89 kcal Atomic # 9 Polarization: -8.64 SS G_CDS: 1.54 Total: -7.10 kcal Atomic # 14 Polarization: 31.50 SS G_CDS: 2.03 Total: 33.53 kcal Total: -52.20 8.42 -43.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240661989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.362 kcal (2) G-P(sol) polarization free energy of solvation -52.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds