Wall clock time and date at job start Tue Mar 31 2020 11:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35839 * 117.00570 * 2 1 4 4 C 1.38729 * 120.13387 * 86.99147 * 3 2 1 5 5 F 1.35102 * 119.94592 * 359.97438 * 4 3 2 6 6 C 1.38366 * 120.09989 * 179.97438 * 4 3 2 7 7 C 1.38466 * 120.37353 * 0.02567 * 6 4 3 8 8 C 1.38100 * 120.25872 * 359.71580 * 7 6 4 9 9 F 1.35106 * 120.05086 * 180.30155 * 8 7 6 10 10 C 1.39864 * 119.89174 * 0.53691 * 8 7 6 11 11 C 1.47847 * 120.18046 * 179.73714 * 10 8 7 12 12 C 1.40065 * 119.50456 * 112.59887 * 11 10 8 13 13 C 1.35948 * 121.18888 * 180.02562 * 12 11 10 14 14 C 1.41076 * 120.11485 * 359.97438 * 13 12 11 15 15 C 1.40399 * 120.48390 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00230 * 204.11746 * 15 14 13 17 17 C 1.40267 * 120.00103 * 24.10632 * 15 14 13 18 18 N 1.30661 * 120.00284 * 16.76410 * 17 15 14 19 19 Si 1.86800 * 120.00383 * 196.76311 * 17 15 14 20 20 H 1.48508 * 109.47213 * 90.00032 * 19 17 15 21 21 H 1.48501 * 109.47369 * 210.00212 * 19 17 15 22 22 H 1.48495 * 109.47059 * 330.00488 * 19 17 15 23 23 C 1.46658 * 119.03821 * 359.97438 * 14 13 12 24 24 C 1.43198 * 120.56476 * 180.02562 * 23 14 13 25 25 N 6.91037 * 71.76396 * 287.94300 * 2 1 3 26 26 C 1.39043 * 118.87505 * 0.03925 * 23 14 13 27 27 H 1.09003 * 109.46420 * 304.82955 * 1 2 3 28 28 H 1.09004 * 109.46802 * 64.82082 * 1 2 3 29 29 H 1.08998 * 109.47324 * 184.82573 * 1 2 3 30 30 H 1.07998 * 119.81390 * 180.02562 * 6 4 3 31 31 H 1.07998 * 119.86922 * 180.02562 * 7 6 4 32 32 H 1.08001 * 119.40506 * 0.02562 * 12 11 10 33 33 H 1.08000 * 119.94804 * 179.97438 * 13 12 11 34 34 H 0.96995 * 120.00708 * 179.97438 * 18 17 15 35 35 H 1.07994 * 120.10586 * 180.25670 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2103 0.0000 4 6 2.3060 1.8594 1.1982 5 9 1.9448 1.2871 2.3675 6 6 2.9348 3.0919 1.1974 7 6 3.3083 3.6866 0.0040 8 6 3.0615 3.0514 -1.1972 9 9 3.4332 3.6327 -2.3588 10 6 2.4217 1.8077 -1.2095 11 6 2.1492 1.1248 -2.4921 12 6 2.8234 -0.0644 -2.7973 13 6 2.5995 -0.7204 -3.9668 14 6 1.6742 -0.2076 -4.9002 15 6 1.4374 -0.8784 -6.1106 16 1 1.0605 -0.3350 -6.9644 17 6 1.6905 -2.2544 -6.2110 18 7 1.8264 -2.9744 -5.1292 19 14 1.8332 -3.0577 -7.8914 20 1 3.2480 -3.0170 -8.3410 21 1 1.3816 -4.4698 -7.8050 22 1 0.9835 -2.3249 -8.8641 23 6 0.9632 1.0365 -4.5877 24 6 0.0167 1.5859 -5.5112 25 7 -0.7334 2.0220 -6.2441 26 6 1.2240 1.6737 -3.3797 27 1 -0.3632 0.5870 0.8436 28 1 -0.3633 0.4372 -0.9301 29 1 -0.3634 -1.0240 0.0864 30 1 3.1354 3.5929 2.1328 31 1 3.7990 4.6486 0.0129 32 1 3.5339 -0.4675 -2.0909 33 1 3.1308 -1.6357 -4.1819 34 1 2.0010 -3.9259 -5.1986 35 1 0.7087 2.5887 -3.1276 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240723372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:37 Heat of formation + Delta-G solvation = -59.869440 kcal Electronic energy + Delta-G solvation = -25122.631375 eV Core-core repulsion = 21107.673295 eV Total energy + Delta-G solvation = -4014.958080 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.81211 -48.56518 -39.58261 -37.65835 -36.93323 -35.18144 -34.34388 -31.65126 -29.99319 -29.69479 -29.03820 -26.78782 -25.71200 -22.89083 -22.50081 -22.05775 -20.77204 -18.20549 -17.84169 -17.55605 -17.31597 -16.43078 -16.05290 -15.75005 -15.56045 -15.12036 -14.76803 -14.46287 -14.36458 -14.23010 -14.01631 -13.65517 -13.02747 -12.95362 -12.72666 -12.43710 -12.20136 -12.01043 -11.84874 -11.78211 -11.56784 -11.45910 -11.29970 -11.09862 -10.89775 -10.59276 -10.07454 -9.92630 -9.79561 -9.60547 -8.72350 -8.37662 -7.83175 -7.63212 -7.24731 -4.82755 0.98092 1.05183 2.15701 2.50838 2.86257 2.91044 2.93999 3.29326 3.61501 3.81882 3.85847 4.06414 4.27844 4.37765 4.44192 4.76890 5.00446 5.11868 5.33761 5.40475 5.43468 5.55975 5.62517 5.87864 5.90442 5.93521 6.07271 6.11247 6.23427 6.29198 6.58142 6.71785 6.76950 6.92986 7.14113 7.37588 7.56624 7.62745 7.71638 7.79569 8.14961 8.32187 8.47576 8.76631 9.62219 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.004190 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.170852 B = 6680.638927 C = 7295.772558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.313 6.313 3 C 0.089 3.911 4 C 0.066 3.934 5 F -0.135 7.135 6 C -0.133 4.133 7 C -0.134 4.134 8 C 0.100 3.900 9 F -0.125 7.125 10 C -0.015 4.015 11 C -0.211 4.211 12 C -0.036 4.036 13 C -0.167 4.167 14 C 0.157 3.843 15 C -0.417 4.417 16 H 0.088 0.912 17 C 0.074 3.926 18 N -0.752 5.752 19 Si 0.918 3.082 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.257 1.257 23 C -0.190 4.190 24 C 0.300 3.700 25 N -0.508 5.508 26 C 0.005 3.995 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.293 0.707 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 3.962 10.567 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.230 6.230 3 C 0.044 3.956 4 C 0.046 3.954 5 F -0.114 7.114 6 C -0.152 4.152 7 C -0.153 4.153 8 C 0.080 3.920 9 F -0.104 7.104 10 C -0.017 4.017 11 C -0.213 4.213 12 C -0.055 4.055 13 C -0.186 4.186 14 C 0.151 3.849 15 C -0.444 4.444 16 H 0.106 0.894 17 C -0.150 4.150 18 N -0.373 5.373 19 Si 0.740 3.260 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.196 4.196 24 C -0.009 4.009 25 N -0.187 5.187 26 C -0.016 4.016 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.113 0.887 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.375 4.188 9.517 10.665 hybrid contribution 0.202 -0.464 -0.226 0.554 sum 2.577 3.724 9.291 10.336 Atomic orbital electron populations 1.23003 0.78391 1.03366 1.00755 1.86050 1.20166 1.22839 1.93896 1.18589 0.99289 0.87926 0.89790 1.18040 1.02998 0.93373 0.81025 1.91477 1.89931 1.84469 1.45473 1.20750 1.01181 0.94159 0.99151 1.20870 1.02833 1.01363 0.90261 1.17772 0.99689 0.92765 0.81729 1.91530 1.88985 1.83284 1.46576 1.19167 0.96638 0.91841 0.94009 1.17310 1.09256 1.00701 0.94018 1.20329 0.96712 0.92435 0.96038 1.20920 1.01024 1.01769 0.94917 1.18492 0.86900 0.87684 0.91781 1.19847 1.33583 0.93065 0.97874 0.89380 1.26186 0.91703 0.97691 0.99460 1.69718 1.28235 1.08829 1.30513 0.86111 0.80325 0.78540 0.80999 1.18463 1.19596 1.18019 1.16669 1.05082 1.03207 0.94635 1.25724 0.91859 0.91228 0.92113 1.81017 1.14038 1.12401 1.11246 1.20395 0.94217 0.95787 0.91223 0.94149 0.92581 0.88628 0.83944 0.83955 0.88686 0.85333 0.89549 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 11.13 101.05 1.12 1.68 16 2 O -0.31 -5.39 9.55 -19.24 -0.18 -5.58 16 3 C 0.09 1.46 5.71 -38.72 -0.22 1.24 16 4 C 0.07 0.93 7.30 -39.35 -0.29 0.64 16 5 F -0.13 -1.94 17.11 2.25 0.04 -1.90 16 6 C -0.13 -1.54 10.01 -39.45 -0.39 -1.94 16 7 C -0.13 -1.61 10.01 -39.55 -0.40 -2.00 16 8 C 0.10 1.54 7.25 -39.02 -0.28 1.26 16 9 F -0.13 -2.09 16.75 2.25 0.04 -2.06 16 10 C -0.02 -0.26 5.27 -104.68 -0.55 -0.81 16 11 C -0.21 -4.17 4.59 -104.82 -0.48 -4.65 16 12 C -0.04 -0.74 9.38 -39.72 -0.37 -1.12 16 13 C -0.17 -3.76 8.63 -39.33 -0.34 -4.10 16 14 C 0.16 3.71 5.75 -104.61 -0.60 3.11 16 15 C -0.42 -9.91 8.57 -38.01 -0.33 -10.24 16 16 H 0.09 2.13 7.35 -52.49 -0.39 1.74 16 17 C 0.07 1.62 5.17 -17.29 -0.09 1.53 16 18 N -0.75 -16.64 10.86 55.56 0.60 -16.04 16 19 Si 0.92 16.66 29.59 -169.99 -5.03 11.63 16 20 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 21 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 23 C -0.19 -4.30 5.93 -104.28 -0.62 -4.92 16 24 C 0.30 6.98 14.28 -22.48 -0.32 6.66 16 25 N -0.51 -12.13 18.54 41.83 0.78 -11.35 16 26 C 0.00 0.10 9.35 -38.82 -0.36 -0.27 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.13 2.94 6.09 -52.49 -0.32 2.62 16 34 H 0.29 5.80 8.29 -40.82 -0.34 5.46 16 35 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -25.55 330.44 -6.10 -31.65 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -2.80 Total: 2.58 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -4.52 Total: -13.91 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: 1.38 Total: -27.39 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.18 Total: -5.58 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.08 Total: -3.96 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.55 -6.10 -31.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240723372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.217 kcal (2) G-P(sol) polarization free energy of solvation -25.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds