Wall clock time and date at job start Tue Mar 31 2020 11:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35884 * 116.99567 * 2 1 4 4 C 1.38774 * 120.10916 * 270.01788 * 3 2 1 5 5 F 1.35099 * 119.96449 * 0.02562 * 4 3 2 6 6 C 1.38341 * 120.07496 * 179.97438 * 4 3 2 7 7 C 1.38390 * 120.32276 * 359.97438 * 6 4 3 8 8 C 1.38189 * 120.23111 * 359.72257 * 7 6 4 9 9 F 1.35107 * 120.04159 * 180.30019 * 8 7 6 10 10 C 1.39610 * 119.91436 * 0.55351 * 8 7 6 11 11 C 1.48201 * 120.15621 * 179.72026 * 10 8 7 12 12 C 1.39868 * 119.54425 * 244.72407 * 11 10 8 13 13 C 1.37678 * 121.16873 * 179.97438 * 12 11 10 14 14 C 1.39597 * 120.18924 * 0.02562 * 13 12 11 15 15 C 1.43208 * 120.45071 * 179.97438 * 14 13 12 16 16 N 7.26609 * 85.90194 * 100.22990 * 2 1 3 17 17 C 1.46554 * 119.10222 * 0.25383 * 14 13 12 18 18 C 1.40844 * 120.55512 * 179.72691 * 17 14 13 19 19 H 1.07995 * 120.00450 * 24.38147 * 18 17 14 20 20 C 1.40229 * 119.99797 * 204.38639 * 18 17 14 21 21 N 1.30657 * 120.00390 * 17.28686 * 20 18 17 22 22 Si 1.86805 * 119.99827 * 197.29193 * 20 18 17 23 23 H 1.48504 * 109.46883 * 59.99936 * 22 20 18 24 24 H 1.48500 * 109.46998 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46985 * 299.99884 * 22 20 18 26 26 C 1.38674 * 119.53922 * 64.71023 * 11 10 8 27 27 H 1.08998 * 109.47635 * 60.00582 * 1 2 3 28 28 H 1.09007 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47630 * 300.00434 * 1 2 3 30 30 H 1.08004 * 119.83928 * 180.02562 * 6 4 3 31 31 H 1.07996 * 119.88464 * 180.02562 * 7 6 4 32 32 H 1.08004 * 119.41063 * 359.97438 * 12 11 10 33 33 H 1.07998 * 119.90530 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00278 * 184.60899 * 21 20 18 35 35 H 1.07994 * 120.13499 * 0.03476 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 2.3614 1.8313 -1.2005 5 9 2.0547 1.2311 -2.3714 6 6 2.9889 3.0642 -1.1997 7 6 3.3051 3.6864 -0.0047 8 6 2.9911 3.0832 1.1983 9 9 3.2962 3.6969 2.3626 10 6 2.3631 1.8363 1.2089 11 6 2.0295 1.1817 2.4960 12 6 2.6546 -0.0212 2.8403 13 6 2.3703 -0.6577 4.0275 14 6 1.4439 -0.1070 4.9149 15 6 1.1435 -0.7646 6.1511 16 7 0.9097 -1.2871 7.1323 17 6 0.7783 1.1499 4.5614 18 6 -0.1656 1.7295 5.4313 19 1 -0.1334 1.5085 6.4879 20 6 -1.1474 2.5935 4.9254 21 7 -1.4109 2.6052 3.6457 22 14 -2.0787 3.7279 6.0810 23 1 -1.1205 4.6341 6.7637 24 1 -3.0539 4.5342 5.3039 25 1 -2.8013 2.9176 7.0942 26 6 1.1021 1.7705 3.3423 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.2325 3.5438 -2.1362 31 1 3.7946 4.6491 -0.0123 32 1 3.3731 -0.4585 2.1627 33 1 2.8653 -1.5856 4.2731 34 1 -2.0414 3.2487 3.2861 35 1 0.6268 2.6993 3.0637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240723434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:29 Heat of formation + Delta-G solvation = -59.157035 kcal Electronic energy + Delta-G solvation = -25451.488754 eV Core-core repulsion = 21436.561566 eV Total energy + Delta-G solvation = -4014.927188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.81543 -48.59222 -39.64730 -37.62116 -36.95634 -35.16931 -34.19794 -31.91974 -30.01985 -29.71830 -28.59176 -26.61242 -25.81810 -23.71823 -22.37315 -21.24323 -21.06193 -18.17082 -17.80877 -17.41877 -17.35042 -16.75584 -16.04983 -15.85060 -15.40541 -15.12653 -14.76872 -14.55040 -14.29442 -14.21358 -14.01700 -13.35183 -13.05720 -12.92752 -12.69423 -12.50207 -12.41041 -11.89494 -11.82015 -11.72200 -11.54100 -11.31779 -11.25044 -11.21542 -10.81456 -10.64249 -10.18083 -9.91034 -9.77266 -9.52643 -8.81031 -8.39721 -7.83066 -7.57445 -7.18997 -4.76539 0.94973 0.99965 2.00745 2.62021 2.88929 2.92080 3.03753 3.24941 3.66729 3.81258 3.88598 4.00453 4.26580 4.40108 4.41945 4.72944 4.94803 5.09231 5.33575 5.40100 5.48008 5.53086 5.71228 5.88845 5.95100 6.00692 6.05564 6.08515 6.16886 6.34639 6.64800 6.69449 6.75543 6.89345 7.08821 7.39892 7.58153 7.60988 7.66947 7.78677 8.12381 8.37304 8.46741 8.78832 9.70176 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.005176 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.267203 B = 5408.182347 C = 6122.505327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.317 6.317 3 C 0.102 3.898 4 C 0.065 3.935 5 F -0.133 7.133 6 C -0.126 4.126 7 C -0.136 4.136 8 C 0.112 3.888 9 F -0.122 7.122 10 C -0.044 4.044 11 C -0.025 4.025 12 C -0.212 4.212 13 C -0.030 4.030 14 C -0.181 4.181 15 C 0.300 3.700 16 N -0.508 5.508 17 C 0.150 3.850 18 C -0.428 4.428 19 H 0.086 0.914 20 C 0.078 3.922 21 N -0.767 5.767 22 Si 0.913 3.087 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.260 1.260 26 C -0.132 4.132 27 H 0.040 0.960 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.291 0.709 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 4.833 -11.440 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.233 6.233 3 C 0.057 3.943 4 C 0.045 3.955 5 F -0.112 7.112 6 C -0.145 4.145 7 C -0.154 4.154 8 C 0.092 3.908 9 F -0.101 7.101 10 C -0.045 4.045 11 C -0.026 4.026 12 C -0.232 4.232 13 C -0.051 4.051 14 C -0.187 4.187 15 C -0.010 4.010 16 N -0.187 5.187 17 C 0.144 3.856 18 C -0.456 4.456 19 H 0.104 0.896 20 C -0.144 4.144 21 N -0.390 5.390 22 Si 0.735 3.265 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.184 1.184 26 C -0.151 4.151 27 H 0.059 0.941 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.403 3.897 -10.095 11.344 hybrid contribution -0.549 0.910 -0.100 1.068 sum 2.854 4.807 -10.195 11.627 Atomic orbital electron populations 1.23077 0.77791 1.03586 1.01395 1.86022 1.20601 1.22722 1.93975 1.18397 0.98755 0.87639 0.89540 1.17969 1.03570 0.93043 0.80872 1.91481 1.91294 1.83213 1.45191 1.20777 1.00678 0.93796 0.99232 1.20881 1.02905 1.01556 0.90099 1.17591 0.99732 0.91584 0.81861 1.91553 1.90586 1.81750 1.46182 1.19356 0.98199 0.92481 0.94489 1.18126 0.98224 0.95472 0.90815 1.20013 1.06797 0.97890 0.98478 1.20355 0.94849 0.97082 0.92766 1.16999 1.11029 0.98303 0.92351 1.25785 0.91274 0.91531 0.92390 1.81022 1.12776 1.12269 1.12679 1.18284 0.89025 0.87127 0.91132 1.19727 1.08506 1.21116 0.96218 0.89586 1.26057 0.96224 0.96279 0.95859 1.69682 1.26511 1.28845 1.13965 0.86247 0.79424 0.80009 0.80771 1.18182 1.19777 1.18430 1.21286 0.98362 1.00620 0.94850 0.94114 0.88705 0.91493 0.83730 0.83697 0.88206 0.88002 0.89795 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 11.13 101.05 1.12 1.66 16 2 O -0.32 -5.49 9.47 -19.38 -0.18 -5.67 16 3 C 0.10 1.71 5.69 -38.81 -0.22 1.49 16 4 C 0.07 0.94 7.30 -39.35 -0.29 0.66 16 5 F -0.13 -1.93 17.11 2.25 0.04 -1.89 16 6 C -0.13 -1.48 10.01 -39.49 -0.40 -1.87 16 7 C -0.14 -1.66 10.01 -39.54 -0.40 -2.06 16 8 C 0.11 1.79 7.23 -39.09 -0.28 1.51 16 9 F -0.12 -2.13 16.64 2.25 0.04 -2.09 16 10 C -0.04 -0.78 5.29 -104.72 -0.55 -1.33 16 11 C -0.03 -0.51 4.64 -105.03 -0.49 -1.00 16 12 C -0.21 -4.23 9.34 -39.18 -0.37 -4.60 16 13 C -0.03 -0.61 9.74 -39.28 -0.38 -0.99 16 14 C -0.18 -4.11 5.95 -104.11 -0.62 -4.73 16 15 C 0.30 7.00 14.28 -22.47 -0.32 6.68 16 16 N -0.51 -12.21 18.54 41.84 0.78 -11.43 16 17 C 0.15 3.56 5.73 -104.68 -0.60 2.96 16 18 C -0.43 -10.30 8.58 -37.85 -0.32 -10.62 16 19 H 0.09 2.10 7.37 -52.49 -0.39 1.72 16 20 C 0.08 1.74 5.16 -17.30 -0.09 1.65 16 21 N -0.77 -17.02 10.95 55.56 0.61 -16.42 16 22 Si 0.91 17.03 29.60 -169.99 -5.03 12.00 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 25 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 26 C -0.13 -2.96 8.13 -38.54 -0.31 -3.27 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.29 5.83 8.30 -40.82 -0.34 5.49 16 35 H 0.13 2.94 6.17 -52.49 -0.32 2.61 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -25.69 330.31 -6.10 -31.78 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -2.80 Total: 2.61 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -4.51 Total: -13.86 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 1.38 Total: -27.85 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.18 Total: -5.67 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.08 Total: -3.98 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.69 -6.10 -31.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240723434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.374 kcal (2) G-P(sol) polarization free energy of solvation -25.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds