Wall clock time and date at job start Tue Mar 31 2020 11:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35884 * 116.99567 * 2 1 4 4 C 1.38774 * 120.10916 * 270.01788 * 3 2 1 5 5 F 1.35099 * 119.96449 * 0.02562 * 4 3 2 6 6 C 1.38341 * 120.07496 * 179.97438 * 4 3 2 7 7 C 1.38390 * 120.32276 * 359.97438 * 6 4 3 8 8 C 1.38189 * 120.23111 * 359.72257 * 7 6 4 9 9 F 1.35107 * 120.04159 * 180.30019 * 8 7 6 10 10 C 1.39610 * 119.91436 * 0.55351 * 8 7 6 11 11 C 1.48201 * 120.15621 * 179.72026 * 10 8 7 12 12 C 1.39868 * 119.54425 * 244.72407 * 11 10 8 13 13 C 1.37678 * 121.16873 * 179.97438 * 12 11 10 14 14 C 1.39597 * 120.18924 * 0.02562 * 13 12 11 15 15 C 1.43208 * 120.45071 * 179.97438 * 14 13 12 16 16 N 7.26609 * 85.90194 * 100.22990 * 2 1 3 17 17 C 1.46554 * 119.10222 * 0.25383 * 14 13 12 18 18 C 1.40844 * 120.55512 * 179.72691 * 17 14 13 19 19 H 1.07995 * 120.00450 * 24.38147 * 18 17 14 20 20 C 1.40229 * 119.99797 * 204.38639 * 18 17 14 21 21 N 1.30657 * 120.00390 * 17.28686 * 20 18 17 22 22 Si 1.86805 * 119.99827 * 197.29193 * 20 18 17 23 23 H 1.48504 * 109.46883 * 59.99936 * 22 20 18 24 24 H 1.48500 * 109.46998 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46985 * 299.99884 * 22 20 18 26 26 C 1.38674 * 119.53922 * 64.71023 * 11 10 8 27 27 H 1.08998 * 109.47635 * 60.00582 * 1 2 3 28 28 H 1.09007 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47630 * 300.00434 * 1 2 3 30 30 H 1.08004 * 119.83928 * 180.02562 * 6 4 3 31 31 H 1.07996 * 119.88464 * 180.02562 * 7 6 4 32 32 H 1.08004 * 119.41063 * 359.97438 * 12 11 10 33 33 H 1.07998 * 119.90530 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00278 * 184.60899 * 21 20 18 35 35 H 1.07994 * 120.13499 * 0.03476 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 2.3614 1.8313 -1.2005 5 9 2.0547 1.2311 -2.3714 6 6 2.9889 3.0642 -1.1997 7 6 3.3051 3.6864 -0.0047 8 6 2.9911 3.0832 1.1983 9 9 3.2962 3.6969 2.3626 10 6 2.3631 1.8363 1.2089 11 6 2.0295 1.1817 2.4960 12 6 2.6546 -0.0212 2.8403 13 6 2.3703 -0.6577 4.0275 14 6 1.4439 -0.1070 4.9149 15 6 1.1435 -0.7646 6.1511 16 7 0.9097 -1.2871 7.1323 17 6 0.7783 1.1499 4.5614 18 6 -0.1656 1.7295 5.4313 19 1 -0.1334 1.5085 6.4879 20 6 -1.1474 2.5935 4.9254 21 7 -1.4109 2.6052 3.6457 22 14 -2.0787 3.7279 6.0810 23 1 -1.1205 4.6341 6.7637 24 1 -3.0539 4.5342 5.3039 25 1 -2.8013 2.9176 7.0942 26 6 1.1021 1.7705 3.3423 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.2325 3.5438 -2.1362 31 1 3.7946 4.6491 -0.0123 32 1 3.3731 -0.4585 2.1627 33 1 2.8653 -1.5856 4.2731 34 1 -2.0414 3.2487 3.2861 35 1 0.6268 2.6993 3.0637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240723434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:28 Heat of formation + Delta-G solvation = -69.798099 kcal Electronic energy + Delta-G solvation = -25451.950185 eV Core-core repulsion = 21436.561566 eV Total energy + Delta-G solvation = -4015.388619 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.93182 -49.86541 -40.90943 -39.25493 -38.14547 -36.99813 -35.87332 -33.36396 -31.71954 -30.88647 -29.99491 -27.85192 -27.53831 -25.09256 -23.57998 -22.85489 -22.54326 -19.61284 -19.29888 -18.92121 -18.56177 -18.16230 -17.26439 -17.18450 -16.84600 -16.39096 -16.05230 -15.92314 -15.68811 -15.46041 -15.32932 -15.07340 -14.57480 -14.50713 -14.10666 -13.99424 -13.63119 -13.50187 -13.47067 -13.20755 -13.11085 -12.81509 -12.68491 -12.62128 -12.23493 -12.20476 -11.76515 -11.57035 -11.19980 -11.05092 -10.06086 -9.56584 -9.54661 -9.19340 -8.86069 -6.55221 -0.23249 -0.16212 0.36926 0.97667 1.34790 1.43965 1.50359 2.01752 2.09856 2.11865 2.29576 2.64139 2.67401 3.09014 3.26173 3.53810 3.56254 3.65298 3.89360 4.03030 4.28872 4.35806 4.40392 4.50755 4.70134 4.77519 4.83966 4.91972 4.93712 4.95994 5.00374 5.09651 5.18719 5.40709 5.58749 5.71795 5.88081 5.98617 6.08557 6.34869 6.39333 6.62266 6.72882 6.94339 8.05499 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.005176 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.267203 B = 5408.182347 C = 6122.505327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.334 6.334 3 C 0.087 3.913 4 C 0.062 3.938 5 F -0.133 7.133 6 C -0.099 4.099 7 C -0.115 4.115 8 C 0.095 3.905 9 F -0.137 7.137 10 C -0.077 4.077 11 C -0.013 4.013 12 C -0.212 4.212 13 C -0.025 4.025 14 C -0.204 4.204 15 C 0.306 3.694 16 N -0.528 5.528 17 C 0.130 3.870 18 C -0.462 4.462 19 H 0.070 0.930 20 C 0.048 3.952 21 N -0.783 5.783 22 Si 0.972 3.028 23 H -0.257 1.257 24 H -0.254 1.254 25 H -0.267 1.267 26 C -0.148 4.148 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.037 0.963 30 H 0.190 0.810 31 H 0.185 0.815 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.301 0.699 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 6.316 -13.929 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.250 6.250 3 C 0.042 3.958 4 C 0.042 3.958 5 F -0.111 7.111 6 C -0.118 4.118 7 C -0.133 4.133 8 C 0.075 3.925 9 F -0.116 7.116 10 C -0.078 4.078 11 C -0.014 4.014 12 C -0.231 4.231 13 C -0.046 4.046 14 C -0.210 4.210 15 C -0.003 4.003 16 N -0.208 5.208 17 C 0.125 3.875 18 C -0.489 4.489 19 H 0.088 0.912 20 C -0.173 4.173 21 N -0.406 5.406 22 Si 0.792 3.208 23 H -0.181 1.181 24 H -0.178 1.178 25 H -0.192 1.192 26 C -0.168 4.168 27 H 0.076 0.924 28 H 0.130 0.870 29 H 0.056 0.944 30 H 0.208 0.792 31 H 0.202 0.798 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.224 5.371 -12.603 14.336 hybrid contribution -0.723 0.442 0.496 0.982 sum 3.501 5.814 -12.107 13.880 Atomic orbital electron populations 1.23112 0.77185 1.04582 1.00729 1.85986 1.21339 1.23606 1.94091 1.18539 0.99425 0.87742 0.90140 1.18094 1.03844 0.93836 0.80028 1.91487 1.91351 1.83425 1.44872 1.21269 0.97630 0.92068 1.00802 1.21289 1.01155 1.02449 0.88426 1.17917 1.00554 0.91246 0.82735 1.91517 1.90823 1.81874 1.47342 1.19295 1.00941 0.93957 0.93614 1.18360 0.96412 0.95110 0.91525 1.20304 1.06652 0.97747 0.98427 1.20627 0.93961 0.97726 0.92276 1.17187 1.12389 0.98645 0.92781 1.25957 0.90804 0.91138 0.92397 1.80995 1.13580 1.13081 1.13130 1.18575 0.89345 0.87655 0.91910 1.19811 1.10167 1.23353 0.95616 0.91200 1.26680 0.96399 0.96958 0.97233 1.69687 1.26797 1.29253 1.14888 0.85377 0.78380 0.78184 0.78842 1.18138 1.17766 1.19213 1.21144 0.99667 1.00673 0.95287 0.92402 0.86969 0.94427 0.79240 0.79763 0.86447 0.85547 0.88782 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 11.13 113.37 1.26 2.40 16 2 O -0.33 -11.37 9.47 -92.25 -0.87 -12.24 16 3 C 0.09 2.80 5.69 22.77 0.13 2.93 16 4 C 0.06 1.61 7.30 22.42 0.16 1.77 16 5 F -0.13 -3.45 17.11 44.97 0.77 -2.68 16 6 C -0.10 -1.85 10.01 22.33 0.22 -1.63 16 7 C -0.11 -2.35 10.01 22.29 0.22 -2.12 16 8 C 0.10 2.89 7.23 22.59 0.16 3.05 16 9 F -0.14 -4.70 16.64 44.97 0.75 -3.95 16 10 C -0.08 -2.69 5.29 -19.93 -0.11 -2.79 16 11 C -0.01 -0.53 4.64 -20.13 -0.09 -0.63 16 12 C -0.21 -8.45 9.34 22.53 0.21 -8.24 16 13 C -0.03 -1.04 9.74 22.47 0.22 -0.82 16 14 C -0.20 -9.57 5.95 -19.53 -0.12 -9.68 16 15 C 0.31 14.73 14.28 88.33 1.26 15.99 16 16 N -0.53 -26.00 18.54 19.01 0.35 -25.65 16 17 C 0.13 6.48 5.73 -19.90 -0.11 6.36 16 18 C -0.46 -23.28 8.58 23.39 0.20 -23.08 16 19 H 0.07 3.62 7.37 -2.91 -0.02 3.60 16 20 C 0.05 2.20 5.16 85.35 0.44 2.64 16 21 N -0.78 -35.58 10.95 21.87 0.24 -35.34 16 22 Si 0.97 35.32 29.60 68.60 2.03 37.35 16 23 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 24 H -0.25 -8.37 7.11 99.48 0.71 -7.67 16 25 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 26 C -0.15 -6.90 8.13 22.94 0.19 -6.71 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.19 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 33 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 34 H 0.30 12.13 8.30 -92.71 -0.77 11.36 16 35 H 0.12 5.55 6.17 -2.91 -0.02 5.53 16 Total: -1.00 -58.21 330.31 8.68 -49.53 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.16 Total: 13.56 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 4.25 Total: -20.58 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.59 Total: -60.99 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.87 Total: -12.24 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 1.52 Total: -6.64 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.35 kcal Total: -58.21 8.68 -49.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240723434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.268 kcal (2) G-P(sol) polarization free energy of solvation -58.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds