Wall clock time and date at job start Tue Mar 31 2020 11:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35891 * 116.99908 * 2 1 4 4 C 1.38748 * 119.92558 * 359.97438 * 3 2 1 5 5 C 1.38142 * 120.06990 * 179.74298 * 4 3 2 6 6 F 1.35100 * 120.04185 * 180.30238 * 5 4 3 7 7 C 1.39644 * 119.91861 * 0.55554 * 5 4 3 8 8 C 1.48216 * 120.08040 * 179.71812 * 7 5 4 9 9 C 1.39865 * 119.54036 * 129.72236 * 8 7 5 10 10 C 1.37686 * 121.16512 * 179.97438 * 9 8 7 11 11 C 1.39603 * 120.19092 * 0.02562 * 10 9 8 12 12 C 1.43202 * 120.44998 * 179.97438 * 11 10 9 13 13 N 9.62535 * 148.14509 * 181.07851 * 3 1 2 14 14 C 1.46550 * 119.09276 * 359.97438 * 11 10 9 15 15 C 1.40850 * 120.54733 * 179.97438 * 14 11 10 16 16 H 1.08004 * 119.99844 * 335.88389 * 15 14 11 17 17 C 1.40230 * 120.00224 * 155.88898 * 15 14 11 18 18 N 1.30665 * 119.99769 * 341.81160 * 17 15 14 19 19 Si 1.86799 * 120.00256 * 161.81226 * 17 15 14 20 20 H 1.48499 * 109.47003 * 89.99887 * 19 17 15 21 21 H 1.48496 * 109.47400 * 209.99702 * 19 17 15 22 22 H 1.48502 * 109.47181 * 330.00363 * 19 17 15 23 23 C 1.38666 * 119.53816 * 309.70806 * 8 7 5 24 24 C 1.39448 * 119.84485 * 359.44667 * 7 5 4 25 25 C 1.38039 * 119.92517 * 0.27543 * 24 7 5 26 26 F 1.35098 * 119.95430 * 180.02562 * 25 24 7 27 27 H 1.09000 * 109.46817 * 300.00030 * 1 2 3 28 28 H 1.08992 * 109.46937 * 60.00000 * 1 2 3 29 29 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.96082 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.41849 * 359.96511 * 9 8 7 32 32 H 1.07998 * 119.90091 * 179.72435 * 10 9 8 33 33 H 0.96997 * 120.00146 * 185.04621 * 18 17 15 34 34 H 1.08001 * 120.13550 * 0.03873 * 23 8 7 35 35 H 1.07995 * 120.03335 * 180.25126 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2888 2.3734 -0.0005 5 6 1.9128 3.6059 0.0048 6 9 1.1749 4.7376 0.0105 7 6 3.3072 3.6806 -0.0009 8 6 3.9805 5.0010 -0.0015 9 6 4.9904 5.2605 0.9306 10 6 5.6383 6.4751 0.9596 11 6 5.2933 7.4767 0.0503 12 6 5.9631 8.7421 0.0759 13 7 6.4951 9.7456 0.0956 14 6 4.2364 7.2153 -0.9306 15 6 3.8636 8.2041 -1.8618 16 1 4.0413 9.2467 -1.6427 17 6 3.2615 7.8350 -3.0733 18 7 3.3615 6.6057 -3.5046 19 14 2.3165 9.1007 -4.0705 20 1 3.2397 9.7721 -5.0203 21 1 1.2324 8.4253 -4.8279 22 1 1.7264 10.1111 -3.1561 23 6 3.6004 5.9617 -0.9264 24 6 4.0649 2.5099 -0.0004 25 6 3.4347 1.2817 0.0000 26 9 4.1682 0.1472 0.0011 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2104 2.3148 -0.0014 31 1 5.2669 4.4948 1.6402 32 1 6.4122 6.6551 1.6911 33 1 3.0088 6.3672 -4.3762 34 1 2.8186 5.7479 -1.6402 35 1 5.1435 2.5641 -0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240959453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:30 Heat of formation + Delta-G solvation = -62.146635 kcal Electronic energy + Delta-G solvation = -24743.677274 eV Core-core repulsion = 20728.620448 eV Total energy + Delta-G solvation = -4015.056827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.68698 -48.60619 -39.96019 -38.21186 -36.91578 -35.10941 -34.15674 -31.63435 -30.33493 -29.98439 -28.72026 -27.10352 -25.84234 -23.33290 -22.80250 -21.19781 -20.94854 -18.55864 -17.87615 -17.42484 -17.27368 -16.78340 -16.28504 -15.96220 -15.31974 -15.17565 -15.02113 -14.73275 -14.34248 -14.31652 -13.98191 -13.45163 -13.31769 -12.93051 -12.70213 -12.32932 -12.29668 -12.17195 -11.84870 -11.74699 -11.66436 -11.44908 -11.39584 -11.24800 -10.98590 -10.76904 -10.59952 -10.08104 -9.85678 -9.56075 -8.89110 -8.25798 -7.82404 -7.38271 -7.17728 -4.76710 1.04202 1.06601 2.08325 2.61447 2.89537 2.93373 2.98440 3.02535 3.46722 3.65622 3.89242 4.05022 4.20846 4.33379 4.41049 4.69418 4.82587 4.95004 4.96166 5.13755 5.26838 5.34288 5.42419 5.51039 5.78345 5.87174 6.01790 6.18192 6.25138 6.31075 6.62473 6.65126 6.77632 6.92152 7.09466 7.16272 7.41012 7.61791 7.65396 7.79618 8.12998 8.37419 8.47416 8.79751 9.70016 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.004333 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.977456 B = 6459.763195 C = 7740.372832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.109 3.891 4 C -0.221 4.221 5 C 0.139 3.861 6 F -0.121 7.121 7 C -0.053 4.053 8 C -0.027 4.027 9 C -0.233 4.233 10 C -0.027 4.027 11 C -0.185 4.185 12 C 0.300 3.700 13 N -0.509 5.509 14 C 0.147 3.853 15 C -0.426 4.426 16 H 0.088 0.912 17 C 0.076 3.924 18 N -0.761 5.761 19 Si 0.915 3.085 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.254 1.254 23 C -0.129 4.129 24 C -0.080 4.080 25 C 0.059 3.941 26 F -0.133 7.133 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.147 0.853 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.292 0.708 34 H 0.131 0.869 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.792 -12.471 2.839 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.063 3.937 4 C -0.241 4.241 5 C 0.120 3.880 6 F -0.099 7.099 7 C -0.055 4.055 8 C -0.028 4.028 9 C -0.252 4.252 10 C -0.048 4.048 11 C -0.191 4.191 12 C -0.010 4.010 13 N -0.189 5.189 14 C 0.142 3.858 15 C -0.453 4.453 16 H 0.106 0.894 17 C -0.147 4.147 18 N -0.383 5.383 19 Si 0.738 3.262 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.178 1.178 23 C -0.149 4.149 24 C -0.099 4.099 25 C 0.039 3.961 26 F -0.111 7.111 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.164 0.836 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.148 0.852 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.011 -11.290 2.689 13.559 hybrid contribution -0.897 0.142 -0.617 1.098 sum -7.908 -11.148 2.072 13.824 Atomic orbital electron populations 1.23128 0.78012 1.04143 1.01736 1.86121 1.21682 1.25493 1.88769 1.18595 0.90468 0.84900 0.99757 1.20878 1.00987 0.90321 1.11869 1.17408 0.88528 0.81723 1.00379 1.91554 1.76313 1.48825 1.93215 1.18885 0.90546 0.94614 1.01413 1.18228 0.96846 0.90464 0.97298 1.20045 1.03334 0.97889 1.03968 1.20355 0.96750 0.92149 0.95512 1.16965 1.04282 0.89356 1.08476 1.25791 0.91573 0.92503 0.91116 1.81021 1.13228 1.12282 1.12338 1.18309 0.86752 0.91907 0.88871 1.19798 1.30280 0.95406 0.99791 0.89376 1.26133 0.93865 0.96279 0.98462 1.69678 1.31809 1.18910 1.17938 0.86151 0.79646 0.80811 0.79624 1.18883 1.19467 1.17786 1.21381 1.01591 0.92929 0.98959 1.20988 1.01431 0.88441 0.98992 1.16788 0.85716 0.82909 1.10731 1.91486 1.76581 1.48591 1.94488 0.92344 0.92287 0.88003 0.83559 0.88162 0.88033 0.89686 0.85182 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.84 10.35 -19.40 -0.20 -4.04 16 3 C 0.11 1.51 6.70 -39.09 -0.26 1.25 16 4 C -0.22 -2.98 9.00 -39.43 -0.35 -3.33 16 5 C 0.14 2.28 7.13 -39.09 -0.28 2.00 16 6 F -0.12 -2.15 15.86 2.25 0.04 -2.12 16 7 C -0.05 -0.92 5.45 -104.82 -0.57 -1.49 16 8 C -0.03 -0.54 5.31 -105.03 -0.56 -1.10 16 9 C -0.23 -4.41 9.41 -39.17 -0.37 -4.77 16 10 C -0.03 -0.53 9.74 -39.27 -0.38 -0.92 16 11 C -0.18 -4.17 5.95 -104.11 -0.62 -4.79 16 12 C 0.30 6.97 14.28 -22.47 -0.32 6.65 16 13 N -0.51 -12.19 18.54 41.84 0.78 -11.42 16 14 C 0.15 3.51 5.74 -104.68 -0.60 2.91 16 15 C -0.43 -10.29 8.58 -37.85 -0.32 -10.62 16 16 H 0.09 2.16 7.37 -52.48 -0.39 1.77 16 17 C 0.08 1.71 5.14 -17.30 -0.09 1.62 16 18 N -0.76 -17.28 10.96 55.56 0.61 -16.67 16 19 Si 0.91 17.09 29.60 -169.99 -5.03 12.05 16 20 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 21 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.25 -4.80 7.11 56.52 0.40 -4.40 16 23 C -0.13 -2.92 7.48 -38.54 -0.29 -3.21 16 24 C -0.08 -1.22 9.43 -39.20 -0.37 -1.59 16 25 C 0.06 0.87 7.30 -39.35 -0.29 0.58 16 26 F -0.13 -2.00 17.10 2.25 0.04 -1.96 16 27 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.15 1.56 6.28 -52.49 -0.33 1.23 16 31 H 0.10 1.64 8.00 -52.49 -0.42 1.22 16 32 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 34 H 0.13 3.05 5.85 -52.49 -0.31 2.74 16 35 H 0.15 2.15 8.03 -52.49 -0.42 1.72 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -26.26 325.49 -6.19 -32.45 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -2.64 Total: 2.43 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -4.68 Total: -15.63 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: 1.38 Total: -28.09 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.20 Total: -4.04 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.07 Total: -4.08 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.26 -6.19 -32.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240959453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.700 kcal (2) G-P(sol) polarization free energy of solvation -26.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds