Wall clock time and date at job start Tue Mar 31 2020 11:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35891 * 116.99908 * 2 1 4 4 C 1.38748 * 119.92558 * 359.97438 * 3 2 1 5 5 C 1.38142 * 120.06990 * 179.74298 * 4 3 2 6 6 F 1.35100 * 120.04185 * 180.30238 * 5 4 3 7 7 C 1.39644 * 119.91861 * 0.55554 * 5 4 3 8 8 C 1.48216 * 120.08040 * 179.71812 * 7 5 4 9 9 C 1.39865 * 119.54036 * 129.72236 * 8 7 5 10 10 C 1.37686 * 121.16512 * 179.97438 * 9 8 7 11 11 C 1.39603 * 120.19092 * 0.02562 * 10 9 8 12 12 C 1.43202 * 120.44998 * 179.97438 * 11 10 9 13 13 N 9.62535 * 148.14509 * 181.07851 * 3 1 2 14 14 C 1.46550 * 119.09276 * 359.97438 * 11 10 9 15 15 C 1.40850 * 120.54733 * 179.97438 * 14 11 10 16 16 H 1.08004 * 119.99844 * 335.88389 * 15 14 11 17 17 C 1.40230 * 120.00224 * 155.88898 * 15 14 11 18 18 N 1.30665 * 119.99769 * 341.81160 * 17 15 14 19 19 Si 1.86799 * 120.00256 * 161.81226 * 17 15 14 20 20 H 1.48499 * 109.47003 * 89.99887 * 19 17 15 21 21 H 1.48496 * 109.47400 * 209.99702 * 19 17 15 22 22 H 1.48502 * 109.47181 * 330.00363 * 19 17 15 23 23 C 1.38666 * 119.53816 * 309.70806 * 8 7 5 24 24 C 1.39448 * 119.84485 * 359.44667 * 7 5 4 25 25 C 1.38039 * 119.92517 * 0.27543 * 24 7 5 26 26 F 1.35098 * 119.95430 * 180.02562 * 25 24 7 27 27 H 1.09000 * 109.46817 * 300.00030 * 1 2 3 28 28 H 1.08992 * 109.46937 * 60.00000 * 1 2 3 29 29 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.96082 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.41849 * 359.96511 * 9 8 7 32 32 H 1.07998 * 119.90091 * 179.72435 * 10 9 8 33 33 H 0.96997 * 120.00146 * 185.04621 * 18 17 15 34 34 H 1.08001 * 120.13550 * 0.03873 * 23 8 7 35 35 H 1.07995 * 120.03335 * 180.25126 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2888 2.3734 -0.0005 5 6 1.9128 3.6059 0.0048 6 9 1.1749 4.7376 0.0105 7 6 3.3072 3.6806 -0.0009 8 6 3.9805 5.0010 -0.0015 9 6 4.9904 5.2605 0.9306 10 6 5.6383 6.4751 0.9596 11 6 5.2933 7.4767 0.0503 12 6 5.9631 8.7421 0.0759 13 7 6.4951 9.7456 0.0956 14 6 4.2364 7.2153 -0.9306 15 6 3.8636 8.2041 -1.8618 16 1 4.0413 9.2467 -1.6427 17 6 3.2615 7.8350 -3.0733 18 7 3.3615 6.6057 -3.5046 19 14 2.3165 9.1007 -4.0705 20 1 3.2397 9.7721 -5.0203 21 1 1.2324 8.4253 -4.8279 22 1 1.7264 10.1111 -3.1561 23 6 3.6004 5.9617 -0.9264 24 6 4.0649 2.5099 -0.0004 25 6 3.4347 1.2817 0.0000 26 9 4.1682 0.1472 0.0011 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2104 2.3148 -0.0014 31 1 5.2669 4.4948 1.6402 32 1 6.4122 6.6551 1.6911 33 1 3.0088 6.3672 -4.3762 34 1 2.8186 5.7479 -1.6402 35 1 5.1435 2.5641 -0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240959453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:29 Heat of formation + Delta-G solvation = -73.351313 kcal Electronic energy + Delta-G solvation = -24744.163145 eV Core-core repulsion = 20728.620448 eV Total energy + Delta-G solvation = -4015.542698 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.92407 -49.84970 -41.02034 -39.67545 -38.23483 -36.89851 -35.80038 -33.06021 -31.72240 -31.42761 -29.91869 -28.07147 -27.53406 -24.69845 -23.99390 -22.76308 -22.39608 -19.66773 -19.46661 -18.96117 -18.46610 -18.19235 -17.33897 -17.27704 -16.74428 -16.43020 -16.05981 -15.93036 -15.66670 -15.56940 -15.32861 -14.97427 -14.73342 -14.55670 -14.40685 -13.81086 -13.50763 -13.48161 -13.43491 -13.20217 -12.98918 -12.82758 -12.77366 -12.54271 -12.39681 -12.17656 -11.93354 -11.69304 -11.46289 -11.19402 -10.05617 -9.61666 -9.50302 -8.89957 -8.77716 -6.53607 -0.24742 -0.09320 0.49933 1.00991 1.35064 1.45447 1.51391 2.04528 2.08106 2.11492 2.18221 2.45411 2.65620 3.08206 3.15005 3.50558 3.58382 3.66321 3.71475 3.97167 4.32186 4.40107 4.40409 4.40711 4.64268 4.70397 4.77217 4.77708 4.93742 4.97576 5.04279 5.15859 5.24769 5.43015 5.50798 5.76399 5.92995 6.02511 6.12450 6.16628 6.41582 6.64608 6.76639 6.97616 8.06787 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.004333 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.977456 B = 6459.763195 C = 7740.372832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.123 3.877 4 C -0.208 4.208 5 C 0.127 3.873 6 F -0.135 7.135 7 C -0.081 4.081 8 C -0.017 4.017 9 C -0.223 4.223 10 C -0.024 4.024 11 C -0.206 4.206 12 C 0.305 3.695 13 N -0.530 5.530 14 C 0.127 3.873 15 C -0.464 4.464 16 H 0.071 0.929 17 C 0.046 3.954 18 N -0.785 5.785 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.254 1.254 22 H -0.261 1.261 23 C -0.153 4.153 24 C -0.071 4.071 25 C 0.050 3.950 26 F -0.134 7.134 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.177 0.823 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.300 0.700 34 H 0.116 0.884 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 -14.708 3.356 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.076 3.924 4 C -0.228 4.228 5 C 0.108 3.892 6 F -0.113 7.113 7 C -0.082 4.082 8 C -0.018 4.018 9 C -0.242 4.242 10 C -0.045 4.045 11 C -0.213 4.213 12 C -0.003 4.003 13 N -0.210 5.210 14 C 0.122 3.878 15 C -0.491 4.491 16 H 0.090 0.910 17 C -0.175 4.175 18 N -0.407 5.407 19 Si 0.795 3.205 20 H -0.187 1.187 21 H -0.178 1.178 22 H -0.185 1.185 23 C -0.173 4.173 24 C -0.090 4.090 25 C 0.030 3.970 26 F -0.113 7.113 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.194 0.806 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.115 -13.552 3.215 16.119 hybrid contribution -0.599 0.580 -0.670 1.070 sum -8.714 -12.971 2.546 15.832 Atomic orbital electron populations 1.23534 0.75416 1.06366 1.02913 1.86137 1.24329 1.24575 1.88136 1.18657 0.90285 0.85617 0.97883 1.21053 1.02449 0.88850 1.10405 1.17642 0.88337 0.82252 1.01007 1.91520 1.76551 1.49808 1.93451 1.18772 0.91172 0.93865 1.04436 1.18503 0.96266 0.91125 0.95904 1.20467 1.02000 0.98157 1.03553 1.20694 0.97052 0.91601 0.95106 1.17210 1.04712 0.89830 1.09514 1.26004 0.91186 0.92574 0.90575 1.80995 1.14160 1.12695 1.13177 1.18600 0.87283 0.92647 0.89308 1.19867 1.33025 0.94779 1.01427 0.91044 1.26752 0.94018 0.98008 0.98734 1.69690 1.32348 1.20030 1.18646 0.85286 0.78668 0.78495 0.78101 1.18709 1.17754 1.18479 1.21256 1.02240 0.93528 1.00230 1.20988 1.01884 0.87958 0.98126 1.16855 0.86328 0.82668 1.11119 1.91483 1.76719 1.48554 1.94532 0.90910 0.91279 0.85470 0.80562 0.84795 0.85209 0.88813 0.86648 0.81666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -6.93 10.35 -92.32 -0.96 -7.88 16 3 C 0.12 3.07 6.70 22.59 0.15 3.22 16 4 C -0.21 -5.08 9.00 22.37 0.20 -4.88 16 5 C 0.13 4.01 7.13 22.59 0.16 4.17 16 6 F -0.13 -4.79 15.86 44.97 0.71 -4.08 16 7 C -0.08 -2.72 5.45 -19.99 -0.11 -2.83 16 8 C -0.02 -0.67 5.31 -20.13 -0.11 -0.77 16 9 C -0.22 -8.04 9.41 22.53 0.21 -7.83 16 10 C -0.02 -0.93 9.74 22.47 0.22 -0.71 16 11 C -0.21 -9.47 5.95 -19.53 -0.12 -9.59 16 12 C 0.31 14.50 14.28 88.33 1.26 15.76 16 13 N -0.53 -25.86 18.54 19.00 0.35 -25.51 16 14 C 0.13 6.27 5.74 -19.90 -0.11 6.16 16 15 C -0.46 -23.48 8.58 23.39 0.20 -23.28 16 16 H 0.07 3.71 7.37 -2.91 -0.02 3.69 16 17 C 0.05 2.12 5.14 85.35 0.44 2.56 16 18 N -0.78 -36.52 10.96 21.87 0.24 -36.28 16 19 Si 0.97 35.67 29.60 68.60 2.03 37.70 16 20 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 21 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 22 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 23 C -0.15 -7.09 7.48 22.94 0.17 -6.92 16 24 C -0.07 -2.04 9.43 22.51 0.21 -1.82 16 25 C 0.05 1.38 7.30 22.42 0.16 1.54 16 26 F -0.13 -3.75 17.10 44.97 0.77 -2.98 16 27 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 28 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 29 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.18 3.13 6.28 -2.91 -0.02 3.11 16 31 H 0.13 3.93 8.00 -2.91 -0.02 3.91 16 32 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 33 H 0.30 12.44 8.30 -92.71 -0.77 11.67 16 34 H 0.12 5.62 5.85 -2.91 -0.02 5.60 16 35 H 0.17 4.25 8.03 -2.91 -0.02 4.23 16 Total: -1.00 -58.28 325.49 8.38 -49.90 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.17 Total: 13.09 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.06 Total: -23.96 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.59 Total: -61.79 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.96 Total: -7.88 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 1.48 Total: -7.06 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -58.28 8.38 -49.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240959453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.447 kcal (2) G-P(sol) polarization free energy of solvation -58.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds