Wall clock time and date at job start Tue Mar 31 2020 11:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35903 * 116.99876 * 2 1 4 4 C 1.38848 * 119.92429 * 359.97438 * 3 2 1 5 5 C 1.37875 * 120.14769 * 180.02562 * 4 3 2 6 6 C 1.39451 * 119.98736 * 0.02562 * 5 4 3 7 7 C 1.48220 * 120.07659 * 180.02562 * 6 5 4 8 8 C 1.39861 * 119.54046 * 309.99738 * 7 6 5 9 9 C 1.37683 * 121.16824 * 180.02562 * 8 7 6 10 10 C 1.39608 * 120.19145 * 359.97438 * 9 8 7 11 11 C 1.43200 * 120.45659 * 179.97438 * 10 9 8 12 12 N 9.62529 * 146.99657 * 178.87198 * 3 1 2 13 13 C 1.46558 * 119.08953 * 0.02562 * 10 9 8 14 14 C 1.40858 * 120.54802 * 180.02562 * 13 10 9 15 15 H 1.07996 * 119.99742 * 335.92595 * 14 13 10 16 16 C 1.40226 * 119.99578 * 155.92836 * 14 13 10 17 17 N 1.30659 * 120.00455 * 341.76180 * 16 14 13 18 18 Si 1.86802 * 119.99328 * 161.76512 * 16 14 13 19 19 H 1.48502 * 109.47323 * 60.00101 * 18 16 14 20 20 H 1.48507 * 109.46969 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47357 * 299.99647 * 18 16 14 22 22 C 1.38659 * 119.53870 * 129.97786 * 7 6 5 23 23 C 1.39627 * 119.84550 * 0.27031 * 6 5 4 24 24 F 1.35099 * 120.07213 * 179.72546 * 23 6 5 25 25 C 1.38308 * 119.85418 * 359.45494 * 23 6 5 26 26 F 1.35096 * 119.99615 * 180.27276 * 25 23 6 27 27 H 1.09004 * 109.47091 * 60.00362 * 1 2 3 28 28 H 1.09001 * 109.46852 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46987 * 299.99763 * 1 2 3 30 30 H 1.08011 * 119.92619 * 0.02562 * 4 3 2 31 31 H 1.08008 * 120.00953 * 180.02562 * 5 4 3 32 32 H 1.08006 * 119.41756 * 359.97438 * 8 7 6 33 33 H 1.07995 * 119.90768 * 179.70039 * 9 8 7 34 34 H 0.97000 * 120.00017 * 185.03468 * 17 16 14 35 35 H 1.07993 * 120.13840 * 0.04117 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2882 2.3744 -0.0005 5 6 1.9094 3.6053 -0.0011 6 6 3.3017 3.6834 -0.0016 7 6 3.9715 5.0057 -0.0016 8 6 3.5850 5.9744 -0.9334 9 6 4.1848 7.2133 -0.9637 10 6 5.1980 7.5252 -0.0553 11 6 5.8261 8.8118 -0.0821 12 7 6.3229 9.8332 -0.1032 13 6 5.6107 6.5174 0.9254 14 6 6.6294 6.7995 1.8565 15 1 7.3658 7.5585 1.6377 16 6 6.6871 6.0947 3.0674 17 7 5.6357 5.4502 3.4991 18 14 8.2674 6.0774 4.0633 19 1 8.6308 7.4673 4.4395 20 1 8.0693 5.2672 5.2921 21 1 9.3586 5.4833 3.2501 22 6 4.9722 5.2651 0.9225 23 6 4.0633 2.5132 -0.0073 24 9 5.4124 2.5836 -0.0135 25 6 3.4336 1.2818 -0.0010 26 9 4.1677 0.1478 -0.0009 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2098 2.3150 -0.0005 31 1 1.3177 4.5089 -0.0011 32 1 2.8027 5.7464 -1.6423 33 1 3.8738 7.9445 -1.6952 34 1 5.6520 5.0239 4.3703 35 1 5.2608 4.5077 1.6361 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241042031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:06 Heat of formation + Delta-G solvation = -73.008015 kcal Electronic energy + Delta-G solvation = -24826.892471 eV Core-core repulsion = 20811.364660 eV Total energy + Delta-G solvation = -4015.527811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.44983 -49.53060 -41.05329 -39.64738 -38.21876 -36.89653 -35.79963 -32.99324 -31.74863 -31.46672 -29.80299 -28.08000 -27.54177 -24.69305 -23.93366 -22.76372 -22.41123 -19.67288 -19.45829 -18.94512 -18.54299 -18.08914 -17.56910 -17.29419 -16.90821 -16.44886 -16.14670 -15.90982 -15.66472 -15.61847 -15.34581 -14.99263 -14.61883 -14.54814 -14.26883 -13.68512 -13.51106 -13.47675 -13.41169 -13.23087 -13.05796 -12.88808 -12.82769 -12.50107 -12.25927 -12.14314 -11.92913 -11.68690 -11.46842 -11.20156 -9.85404 -9.71715 -9.50056 -8.91724 -8.78781 -6.54132 -0.23189 -0.09188 0.51354 1.01631 1.32662 1.42789 1.50070 1.98699 2.04689 2.09609 2.22018 2.48918 2.65378 2.94462 3.40758 3.54787 3.58011 3.69384 3.79567 4.01489 4.12509 4.40616 4.44731 4.49013 4.65229 4.80015 4.82135 4.92100 4.95280 5.04815 5.10782 5.20979 5.25022 5.44451 5.52432 5.77453 5.93377 6.03310 6.13158 6.22440 6.42245 6.64288 6.77033 6.97911 8.05593 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.004378 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.000700 B = 6394.461032 C = 7645.257735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.122 3.878 4 C -0.170 4.170 5 C -0.036 4.036 6 C -0.083 4.083 7 C -0.016 4.016 8 C -0.217 4.217 9 C -0.024 4.024 10 C -0.206 4.206 11 C 0.305 3.695 12 N -0.531 5.531 13 C 0.127 3.873 14 C -0.466 4.466 15 H 0.071 0.929 16 C 0.046 3.954 17 N -0.785 5.785 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.255 1.255 21 H -0.260 1.260 22 C -0.158 4.158 23 C 0.090 3.910 24 F -0.137 7.137 25 C 0.005 3.995 26 F -0.140 7.140 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.190 0.810 31 H 0.174 0.826 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.300 0.700 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.271 -11.991 -3.623 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.075 3.925 4 C -0.188 4.188 5 C -0.054 4.054 6 C -0.084 4.084 7 C -0.017 4.017 8 C -0.236 4.236 9 C -0.044 4.044 10 C -0.212 4.212 11 C -0.003 4.003 12 N -0.211 5.211 13 C 0.121 3.879 14 C -0.494 4.494 15 H 0.089 0.911 16 C -0.176 4.176 17 N -0.407 5.407 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.179 1.179 21 H -0.184 1.184 22 C -0.178 4.178 23 C 0.070 3.930 24 F -0.115 7.115 25 C -0.016 4.016 26 F -0.119 7.119 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.094 0.906 30 H 0.207 0.793 31 H 0.191 0.809 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.111 0.889 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.445 -10.858 -3.479 17.628 hybrid contribution 1.340 -0.423 0.730 1.583 sum -12.105 -11.281 -2.749 16.773 Atomic orbital electron populations 1.23578 0.74817 1.06286 1.03467 1.86106 1.24792 1.25060 1.88119 1.18750 0.88825 0.87207 0.97734 1.21518 1.02356 0.89230 1.05700 1.21341 0.90972 0.99549 0.93548 1.18979 0.94591 0.90459 1.04386 1.18527 0.95576 0.91793 0.95827 1.20483 1.06464 0.93411 1.03244 1.20727 0.92119 0.96584 0.95010 1.17225 1.06657 0.87807 1.09508 1.26011 0.91301 0.92460 0.90559 1.80995 1.12972 1.13891 1.13195 1.18594 0.90136 0.89783 0.89337 1.19847 1.10512 1.17528 1.01493 0.91065 1.26733 1.00490 0.91545 0.98786 1.69678 1.29804 1.22612 1.18647 0.85367 0.77758 0.79801 0.77808 1.18693 1.17903 1.18401 1.21263 0.99447 0.96477 1.00591 1.17720 0.77323 0.92776 1.05220 1.91498 1.29196 1.97017 1.93798 1.16922 0.88063 0.80884 1.15717 1.91443 1.77127 1.48412 1.94895 0.90190 0.86088 0.90596 0.79265 0.80903 0.84029 0.84931 0.88898 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -7.12 10.35 -92.46 -0.96 -8.08 16 3 C 0.12 3.04 6.69 22.58 0.15 3.19 16 4 C -0.17 -3.17 9.02 22.33 0.20 -2.97 16 5 C -0.04 -0.84 9.45 22.48 0.21 -0.63 16 6 C -0.08 -2.76 5.45 -20.00 -0.11 -2.87 16 7 C -0.02 -0.63 5.31 -20.13 -0.11 -0.74 16 8 C -0.22 -7.51 9.41 22.53 0.21 -7.29 16 9 C -0.02 -0.90 9.74 22.47 0.22 -0.68 16 10 C -0.21 -9.41 5.95 -19.53 -0.12 -9.52 16 11 C 0.31 14.47 14.27 88.33 1.26 15.73 16 12 N -0.53 -25.86 18.54 19.00 0.35 -25.50 16 13 C 0.13 6.35 5.74 -19.90 -0.11 6.24 16 14 C -0.47 -24.12 8.58 23.39 0.20 -23.92 16 15 H 0.07 3.77 7.37 -2.91 -0.02 3.75 16 16 C 0.05 2.17 5.14 85.35 0.44 2.60 16 17 N -0.78 -37.59 10.96 21.87 0.24 -37.35 16 18 Si 0.97 37.05 29.60 68.60 2.03 39.08 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 C -0.16 -7.50 7.48 22.94 0.17 -7.33 16 23 C 0.09 3.27 7.14 22.62 0.16 3.43 16 24 F -0.14 -5.78 15.77 44.97 0.71 -5.07 16 25 C 0.00 0.16 7.31 22.45 0.16 0.32 16 26 F -0.14 -4.96 17.02 44.97 0.77 -4.20 16 27 H 0.08 0.48 7.65 -2.38 -0.02 0.46 16 28 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.52 7.65 -2.39 -0.02 0.50 16 30 H 0.19 1.72 6.28 -2.90 -0.02 1.70 16 31 H 0.17 3.07 8.03 -2.91 -0.02 3.04 16 32 H 0.14 3.75 8.00 -2.91 -0.02 3.72 16 33 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 34 H 0.30 12.88 8.30 -92.71 -0.77 12.11 16 35 H 0.11 5.57 5.84 -2.91 -0.02 5.55 16 Total: -1.00 -63.76 325.36 8.37 -55.40 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.17 Total: 8.93 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 4.06 Total: -23.21 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.59 Total: -62.85 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.96 Total: -8.08 kcal Atomic # 9 Polarization: -10.74 SS G_CDS: 1.47 Total: -9.26 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -63.76 8.37 -55.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241042031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.612 kcal (2) G-P(sol) polarization free energy of solvation -63.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds