Wall clock time and date at job start Tue Mar 31 2020 11:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35854 * 117.00171 * 2 1 4 4 C 1.38974 * 119.90207 * 0.02562 * 3 2 1 5 5 C 1.37763 * 120.16346 * 180.02562 * 4 3 2 6 6 C 1.39715 * 119.97059 * 359.97438 * 5 4 3 7 7 C 1.47856 * 120.09429 * 180.02562 * 6 5 4 8 8 C 1.40063 * 119.50352 * 309.99465 * 7 6 5 9 9 C 1.35955 * 121.18495 * 179.97438 * 8 7 6 10 10 C 1.41076 * 120.11518 * 359.97438 * 9 8 7 11 11 C 1.40394 * 120.48075 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99814 * 208.77471 * 11 10 9 13 13 C 1.40261 * 120.00107 * 28.77065 * 11 10 9 14 14 N 1.30658 * 119.99771 * 197.55988 * 13 11 10 15 15 Si 1.86796 * 119.99998 * 17.56101 * 13 11 10 16 16 H 1.48501 * 109.47213 * 269.99623 * 15 13 11 17 17 H 1.48496 * 109.47415 * 29.99835 * 15 13 11 18 18 H 1.48506 * 109.47227 * 149.99866 * 15 13 11 19 19 C 1.46661 * 119.03479 * 0.29085 * 10 9 8 20 20 C 1.43206 * 120.56337 * 179.70274 * 19 10 9 21 21 N 9.62012 * 128.94732 * 20.50078 * 2 1 3 22 22 C 1.39040 * 118.87557 * 359.44984 * 19 10 9 23 23 C 1.39890 * 119.80581 * 0.27203 * 6 5 4 24 24 F 1.35109 * 120.07914 * 179.70372 * 23 6 5 25 25 C 1.38207 * 119.83957 * 359.47390 * 23 6 5 26 26 F 1.35102 * 119.98793 * 180.25160 * 25 23 6 27 27 H 1.08995 * 109.47158 * 59.99726 * 1 2 3 28 28 H 1.09000 * 109.46933 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46750 * 299.99796 * 1 2 3 30 30 H 1.07998 * 119.91891 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.01710 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.41353 * 359.96153 * 8 7 6 33 33 H 1.08003 * 119.94226 * 180.02562 * 9 8 7 34 34 H 0.96997 * 120.00132 * 355.44719 * 14 13 11 35 35 H 1.08005 * 120.10313 * 180.26057 * 22 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2869 2.3747 0.0005 5 6 1.9068 3.6050 0.0000 6 6 3.3017 3.6837 -0.0005 7 6 3.9698 5.0027 -0.0005 8 6 3.5822 5.9723 -0.9341 9 6 4.1731 7.1964 -0.9643 10 6 5.1961 7.5115 -0.0453 11 6 5.8111 8.7733 -0.0693 12 1 6.8339 8.8818 0.2600 13 6 5.0972 9.8930 -0.5210 14 7 5.7362 10.9778 -0.8703 15 14 3.2330 9.8331 -0.6232 16 1 2.8263 9.3428 -1.9647 17 1 2.7092 8.9145 0.4193 18 1 2.6813 11.1946 -0.4057 19 6 5.6118 6.4996 0.9316 20 6 6.6512 6.7823 1.8752 21 7 7.4762 7.0080 2.6203 22 6 4.9759 5.2631 0.9295 23 6 4.0644 2.5110 -0.0063 24 9 5.4136 2.5807 -0.0129 25 6 3.4343 1.2809 -0.0004 26 9 4.1679 0.1465 -0.0008 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2086 2.3148 0.0014 31 1 1.3148 4.5083 0.0008 32 1 2.8001 5.7434 -1.6428 33 1 3.8582 7.9291 -1.6925 34 1 6.6977 11.0326 -0.7551 35 1 5.2634 4.5049 1.6429 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241042218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:20 Heat of formation + Delta-G solvation = -63.583441 kcal Electronic energy + Delta-G solvation = -24605.856928 eV Core-core repulsion = 20590.737797 eV Total energy + Delta-G solvation = -4015.119131 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.19665 -48.26355 -40.05739 -38.43510 -37.07642 -35.32865 -34.31648 -31.72230 -30.64434 -30.25142 -29.15121 -27.55261 -25.30356 -23.04281 -22.55244 -22.01533 -21.07739 -18.70047 -18.57705 -17.91810 -17.39892 -16.53977 -16.47033 -15.97545 -15.52591 -15.24063 -14.87855 -14.72724 -14.59107 -14.37263 -14.32340 -13.97643 -13.34750 -13.05791 -12.74268 -12.63525 -12.47417 -12.33355 -12.14938 -11.99436 -11.66205 -11.50626 -11.32021 -11.23881 -10.98375 -10.83310 -10.44406 -10.19040 -9.82518 -9.41164 -8.74020 -8.52481 -8.09730 -7.92504 -7.54195 -5.02701 0.97424 1.03087 1.88689 2.31555 2.86116 2.93674 3.10519 3.28051 3.43204 3.67462 3.72645 3.86495 4.02309 4.30547 4.52856 4.65331 4.75145 4.89041 4.89432 5.04154 5.09168 5.17018 5.23596 5.29764 5.65398 5.72260 5.86490 6.03598 6.04938 6.28700 6.35994 6.42577 6.59549 6.86406 6.98100 7.07085 7.14897 7.22997 7.37440 7.47246 7.87910 7.97972 8.22155 8.60800 9.47361 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.003833 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.924895 B = 7303.455927 C = 8397.639866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.097 3.903 4 C -0.186 4.186 5 C -0.067 4.067 6 C -0.027 4.027 7 C -0.218 4.218 8 C -0.019 4.019 9 C -0.243 4.243 10 C 0.134 3.866 11 C -0.462 4.462 12 H 0.086 0.914 13 C 0.038 3.962 14 N -0.773 5.773 15 Si 1.074 2.926 16 H -0.268 1.268 17 H -0.254 1.254 18 H -0.284 1.284 19 C -0.175 4.175 20 C 0.296 3.704 21 N -0.496 5.496 22 C 0.019 3.981 23 C 0.095 3.905 24 F -0.118 7.118 25 C 0.036 3.964 26 F -0.128 7.128 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.295 0.705 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.032 -12.973 -2.087 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.051 3.949 4 C -0.205 4.205 5 C -0.085 4.085 6 C -0.029 4.029 7 C -0.220 4.220 8 C -0.038 4.038 9 C -0.262 4.262 10 C 0.129 3.871 11 C -0.488 4.488 12 H 0.104 0.896 13 C -0.187 4.187 14 N -0.391 5.391 15 Si 0.898 3.102 16 H -0.194 1.194 17 H -0.178 1.178 18 H -0.211 1.211 19 C -0.180 4.180 20 C -0.014 4.014 21 N -0.174 5.174 22 C -0.002 4.002 23 C 0.074 3.926 24 F -0.096 7.096 25 C 0.015 3.985 26 F -0.107 7.107 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.774 -11.882 -1.400 18.245 hybrid contribution 1.514 -1.004 0.083 1.818 sum -12.260 -12.886 -1.317 17.835 Atomic orbital electron populations 1.23109 0.77901 1.04105 1.01635 1.86077 1.21665 1.25746 1.88882 1.18639 0.89753 0.85716 1.00761 1.21082 1.00249 0.91182 1.07987 1.21089 0.92880 0.97442 0.97093 1.18745 0.92525 0.91533 1.00063 1.17411 1.06002 0.93053 1.05518 1.20339 0.96126 0.92367 0.94930 1.20718 1.04246 0.97959 1.03286 1.18551 0.89498 0.91591 0.87510 1.20968 1.00931 0.93128 1.33777 0.89607 1.27771 1.09705 0.91643 0.89537 1.70448 1.13788 1.29375 1.25528 0.83590 0.70718 0.76660 0.79232 1.19450 1.17764 1.21081 1.16696 1.02850 0.97989 1.00480 1.25590 0.92105 0.91711 0.92011 1.80975 1.13135 1.10000 1.13284 1.20635 0.91363 0.93545 0.94618 1.17526 0.77977 0.91728 1.05334 1.91542 1.27567 1.96858 1.93619 1.16700 0.86705 0.81697 1.13359 1.91491 1.76555 1.48041 1.94563 0.92340 0.88113 0.92338 0.84211 0.83871 0.87736 0.86505 0.89261 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.65 10.35 -19.28 -0.20 -3.85 16 3 C 0.10 1.25 6.70 -39.02 -0.26 0.99 16 4 C -0.19 -1.98 9.02 -39.48 -0.36 -2.34 16 5 C -0.07 -0.81 9.46 -39.20 -0.37 -1.18 16 6 C -0.03 -0.42 5.45 -104.79 -0.57 -0.99 16 7 C -0.22 -3.88 5.33 -104.82 -0.56 -4.44 16 8 C -0.02 -0.33 9.34 -39.72 -0.37 -0.70 16 9 C -0.24 -4.85 7.20 -39.33 -0.28 -5.13 16 10 C 0.13 3.01 5.30 -104.61 -0.55 2.45 16 11 C -0.46 -11.07 8.90 -38.01 -0.34 -11.41 16 12 H 0.09 2.22 7.61 -52.49 -0.40 1.82 16 13 C 0.04 0.88 5.42 -17.29 -0.09 0.79 16 14 N -0.77 -18.35 13.64 55.56 0.76 -17.59 16 15 Si 1.07 20.44 24.90 -169.99 -4.23 16.20 16 16 H -0.27 -4.66 6.44 56.52 0.36 -4.29 16 17 H -0.25 -4.69 7.02 56.52 0.40 -4.29 16 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 19 C -0.17 -3.81 5.93 -104.27 -0.62 -4.43 16 20 C 0.30 6.83 14.33 -22.53 -0.32 6.51 16 21 N -0.50 -11.87 18.53 41.77 0.77 -11.09 16 22 C 0.02 0.38 8.54 -38.83 -0.33 0.05 16 23 C 0.09 1.54 7.14 -38.97 -0.28 1.26 16 24 F -0.12 -2.11 15.78 2.25 0.04 -2.07 16 25 C 0.04 0.55 7.31 -39.30 -0.29 0.27 16 26 F -0.13 -2.09 17.01 2.25 0.04 -2.05 16 27 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 30 H 0.14 1.02 6.27 -52.49 -0.33 0.69 16 31 H 0.14 1.46 8.03 -52.49 -0.42 1.04 16 32 H 0.10 1.51 7.99 -52.49 -0.42 1.09 16 33 H 0.12 2.24 4.39 -52.48 -0.23 2.01 16 34 H 0.30 6.89 8.72 -40.82 -0.36 6.53 16 35 H 0.10 1.92 7.75 -52.48 -0.41 1.51 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -26.48 320.18 -5.23 -31.70 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.62 Total: 1.06 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -4.61 Total: -17.14 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: 1.53 Total: -28.69 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.20 Total: -3.85 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.07 Total: -4.12 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.23 Total: 16.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.48 -5.23 -31.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241042218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.879 kcal (2) G-P(sol) polarization free energy of solvation -26.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds