Wall clock time and date at job start Tue Mar 31 2020 11:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36007 * 116.99547 * 2 1 4 4 C 1.38707 * 119.97516 * 359.97438 * 3 2 1 5 5 C 1.38277 * 120.25483 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.20010 * 359.79022 * 5 4 3 7 7 F 1.35097 * 120.03204 * 180.22903 * 6 5 4 8 8 C 1.39605 * 119.94442 * 0.48694 * 6 5 4 9 9 C 1.48251 * 120.12978 * 179.77150 * 8 6 5 10 10 C 1.39846 * 119.53413 * 244.72260 * 9 8 6 11 11 C 1.37695 * 121.16314 * 179.97438 * 10 9 8 12 12 C 1.39591 * 120.19396 * 0.02562 * 11 10 9 13 13 C 1.43195 * 120.45877 * 179.97438 * 12 11 10 14 14 N 9.90127 * 163.12845 * 357.65493 * 2 1 3 15 15 C 1.46552 * 119.09006 * 0.28072 * 12 11 10 16 16 C 1.40848 * 120.55338 * 179.72041 * 15 12 11 17 17 H 1.07999 * 120.00002 * 24.36184 * 16 15 12 18 18 C 1.40236 * 119.99883 * 204.36442 * 16 15 12 19 19 N 1.30658 * 119.99855 * 17.27246 * 18 16 15 20 20 Si 1.86797 * 119.99464 * 197.27611 * 18 16 15 21 21 H 1.48494 * 109.47620 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47080 * 120.00211 * 20 18 16 23 23 H 1.48500 * 109.46696 * 239.99374 * 20 18 16 24 24 C 1.38633 * 119.53851 * 64.69846 * 9 8 6 25 25 C 1.38681 * 119.97142 * 180.02562 * 3 2 1 26 26 F 1.35094 * 120.09796 * 359.97438 * 25 3 2 27 27 H 1.08997 * 109.47212 * 299.99312 * 1 2 3 28 28 H 1.08995 * 109.47120 * 60.00241 * 1 2 3 29 29 H 1.09008 * 109.46753 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.87418 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.90357 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.42046 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.90441 * 180.02562 * 11 10 9 34 34 H 0.97003 * 119.99667 * 184.53007 * 19 18 16 35 35 H 1.08001 * 120.13820 * 0.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2903 2.3748 -0.0005 5 6 1.9120 3.6099 0.0000 6 6 3.2917 3.6940 0.0054 7 9 3.8955 4.9025 0.0106 8 6 4.0608 2.5289 0.0001 9 6 5.5409 2.6142 0.0008 10 6 6.2592 2.1404 -1.1015 11 6 7.6343 2.2036 -1.1366 12 6 8.3397 2.7465 -0.0614 13 6 9.7698 2.8146 -0.0916 14 7 10.9041 2.8712 -0.1176 15 6 7.5971 3.2399 1.1018 16 6 8.2781 3.7883 2.2061 17 1 9.2634 4.2112 2.0772 18 6 7.6766 3.7851 3.4729 19 7 6.6628 2.9965 3.7127 20 14 8.3249 4.9083 4.8173 21 1 9.4708 5.6952 4.2952 22 1 7.2469 5.8322 5.2529 23 1 8.7723 4.0900 5.9728 24 6 6.1933 3.1631 1.0940 25 6 3.4313 1.2839 -0.0005 26 9 4.1686 0.1518 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 0.2119 2.3153 -0.0005 31 1 1.3178 4.5118 0.0000 32 1 5.7261 1.7174 -1.9401 33 1 8.1686 1.8320 -1.9984 34 1 6.2051 3.0411 4.5668 35 1 5.6259 3.5251 1.9386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241142169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:32 Heat of formation + Delta-G solvation = -58.488928 kcal Electronic energy + Delta-G solvation = -25047.167755 eV Core-core repulsion = 21032.269539 eV Total energy + Delta-G solvation = -4014.898216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.51601 -48.45197 -39.90489 -38.07134 -36.90916 -35.11086 -34.15570 -31.89716 -30.01979 -29.98427 -28.44594 -27.29507 -25.80478 -23.53406 -22.51432 -21.20619 -20.95955 -18.31148 -17.73724 -17.53194 -17.30539 -16.94020 -16.17254 -15.63858 -15.35083 -15.21007 -14.84516 -14.73064 -14.50352 -14.14122 -13.96707 -13.34094 -13.03511 -12.91909 -12.67903 -12.57277 -12.17309 -12.00551 -11.90637 -11.75711 -11.61988 -11.40479 -11.31430 -11.19797 -10.89391 -10.76471 -10.59392 -10.07022 -9.87726 -9.51173 -8.76312 -8.03090 -7.80142 -7.55015 -7.14692 -4.72956 1.01507 1.17549 2.03345 2.63188 2.93187 2.99396 3.02369 3.07634 3.46664 3.70607 3.91833 4.05242 4.13801 4.45362 4.50525 4.66024 4.84386 4.96696 4.97643 5.11824 5.27431 5.32681 5.45031 5.56550 5.85165 5.94816 6.01186 6.13493 6.17084 6.32304 6.65791 6.68450 6.78494 6.92705 7.12027 7.22413 7.43392 7.63628 7.66737 7.81757 8.15978 8.40790 8.50063 8.82260 9.74583 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.004640 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.990490 B = 6033.649838 C = 6908.323377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.079 3.921 4 C -0.166 4.166 5 C -0.129 4.129 6 C 0.102 3.898 7 F -0.123 7.123 8 C -0.048 4.048 9 C -0.031 4.031 10 C -0.223 4.223 11 C -0.027 4.027 12 C -0.182 4.182 13 C 0.301 3.699 14 N -0.509 5.509 15 C 0.149 3.851 16 C -0.426 4.426 17 H 0.088 0.912 18 C 0.076 3.924 19 N -0.763 5.763 20 Si 0.913 3.087 21 H -0.255 1.255 22 H -0.266 1.266 23 H -0.269 1.269 24 C -0.125 4.125 25 C 0.111 3.889 26 F -0.115 7.115 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.291 0.709 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.840 -0.875 -3.040 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.033 3.967 4 C -0.185 4.185 5 C -0.148 4.148 6 C 0.082 3.918 7 F -0.102 7.102 8 C -0.050 4.050 9 C -0.032 4.032 10 C -0.243 4.243 11 C -0.047 4.047 12 C -0.188 4.188 13 C -0.009 4.009 14 N -0.188 5.188 15 C 0.144 3.856 16 C -0.453 4.453 17 H 0.106 0.894 18 C -0.147 4.147 19 N -0.385 5.385 20 Si 0.736 3.264 21 H -0.178 1.178 22 H -0.190 1.190 23 H -0.194 1.194 24 C -0.144 4.144 25 C 0.091 3.909 26 F -0.093 7.093 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.070 -1.116 -2.864 15.380 hybrid contribution -0.409 0.489 0.713 0.957 sum -15.479 -0.626 -2.151 15.640 Atomic orbital electron populations 1.23090 0.78280 1.04090 1.01362 1.86163 1.21382 1.25589 1.89054 1.18847 0.90506 0.85661 1.01652 1.20817 1.00097 0.90541 1.07013 1.20830 0.92425 0.98677 1.02839 1.17308 0.89909 0.80280 1.04260 1.91540 1.83812 1.41114 1.93697 1.18969 0.95416 0.89879 1.00763 1.18116 0.87541 1.01519 0.96007 1.19992 0.93179 1.12313 0.98800 1.20335 0.93350 0.95625 0.95434 1.16968 0.83306 1.17632 1.00889 1.25761 0.92695 0.91284 0.91155 1.81019 1.12712 1.13974 1.11081 1.18313 0.90899 0.86719 0.89682 1.19813 1.03239 1.30723 0.91564 0.89416 1.26104 0.94261 0.94038 1.00298 1.69725 1.16364 1.27355 1.25058 0.86137 0.80426 0.80274 0.79542 1.17831 1.19030 1.19402 1.21292 0.93758 1.02525 0.96812 1.16626 0.85297 0.82487 1.06537 1.91540 1.76489 1.47651 1.93632 0.92489 0.92546 0.88125 0.83988 0.84041 0.88362 0.87920 0.89789 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.07 10.36 -19.76 -0.20 -4.28 16 3 C 0.08 1.14 6.69 -39.24 -0.26 0.88 16 4 C -0.17 -1.91 9.03 -39.39 -0.36 -2.26 16 5 C -0.13 -1.61 10.01 -39.57 -0.40 -2.01 16 6 C 0.10 1.68 7.23 -39.07 -0.28 1.40 16 7 F -0.12 -2.20 16.63 2.25 0.04 -2.17 16 8 C -0.05 -0.90 5.28 -104.80 -0.55 -1.46 16 9 C -0.03 -0.66 4.71 -105.03 -0.49 -1.15 16 10 C -0.22 -4.62 9.44 -39.18 -0.37 -4.99 16 11 C -0.03 -0.56 9.74 -39.28 -0.38 -0.95 16 12 C -0.18 -4.27 5.95 -104.12 -0.62 -4.89 16 13 C 0.30 7.19 14.28 -22.47 -0.32 6.87 16 14 N -0.51 -12.46 18.54 41.84 0.78 -11.68 16 15 C 0.15 3.69 5.73 -104.67 -0.60 3.09 16 16 C -0.43 -10.58 8.58 -37.84 -0.32 -10.91 16 17 H 0.09 2.20 7.37 -52.49 -0.39 1.82 16 18 C 0.08 1.75 5.16 -17.30 -0.09 1.66 16 19 N -0.76 -17.86 10.95 55.56 0.61 -17.25 16 20 Si 0.91 17.46 29.60 -169.99 -5.03 12.43 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 22 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.12 -2.95 8.13 -38.55 -0.31 -3.26 16 25 C 0.11 1.96 7.24 -38.94 -0.28 1.68 16 26 F -0.11 -2.24 16.49 2.25 0.04 -2.21 16 27 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 29 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.14 1.10 6.28 -52.48 -0.33 0.77 16 31 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 35 H 0.13 3.12 6.18 -52.49 -0.32 2.79 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -27.89 326.63 -6.17 -34.06 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -2.66 Total: 1.26 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -4.65 Total: -15.09 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 1.38 Total: -28.93 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.20 Total: -4.28 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.07 Total: -4.37 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.89 -6.17 -34.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241142169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.432 kcal (2) G-P(sol) polarization free energy of solvation -27.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds