Wall clock time and date at job start Tue Mar 31 2020 11:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36010 * 116.99672 * 2 1 4 4 C 1.38774 * 119.96230 * 359.97363 * 3 2 1 5 5 C 1.38327 * 120.29444 * 179.97438 * 4 3 2 6 6 C 1.38173 * 120.22374 * 359.77022 * 5 4 3 7 7 F 1.35101 * 120.04272 * 180.27759 * 6 5 4 8 8 C 1.39845 * 119.91609 * 0.53091 * 6 5 4 9 9 C 1.47929 * 120.14592 * 179.72272 * 8 6 5 10 10 C 1.40023 * 119.50110 * 244.72565 * 9 8 6 11 11 C 1.35978 * 121.18772 * 179.97438 * 10 9 8 12 12 C 1.41067 * 120.11388 * 359.97438 * 11 10 9 13 13 C 1.40413 * 120.48778 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99960 * 154.62805 * 13 12 11 15 15 C 1.40281 * 119.99708 * 334.63469 * 13 12 11 16 16 N 1.30653 * 120.00114 * 334.60738 * 15 13 12 17 17 Si 1.86805 * 120.00091 * 154.61096 * 15 13 12 18 18 H 1.48498 * 109.47210 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47071 * 299.99963 * 17 15 13 20 20 H 1.48498 * 109.46903 * 59.99365 * 17 15 13 21 21 C 1.46652 * 119.02622 * 0.26731 * 12 11 10 22 22 C 1.43203 * 120.56302 * 179.72581 * 21 12 11 23 23 N 9.07996 * 144.48671 * 36.29121 * 2 1 3 24 24 C 1.39066 * 118.87628 * 359.50137 * 21 12 11 25 25 C 1.38610 * 119.96112 * 180.02562 * 3 2 1 26 26 F 1.35105 * 120.10835 * 359.97438 * 25 3 2 27 27 H 1.09006 * 109.46975 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47153 * 300.00082 * 1 2 3 29 29 H 1.09005 * 109.47533 * 60.00355 * 1 2 3 30 30 H 1.07999 * 119.85472 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.88596 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.40932 * 359.97438 * 10 9 8 33 33 H 1.07994 * 119.94694 * 180.02562 * 11 10 9 34 34 H 0.96998 * 119.99722 * 354.18693 * 16 15 13 35 35 H 1.08001 * 120.10444 * 180.24539 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2119 0.0000 4 6 1.2897 2.3752 -0.0006 5 6 1.9105 3.6114 0.0000 6 6 3.2895 3.6972 0.0059 7 9 3.8920 4.9064 0.0120 8 6 4.0609 2.5307 0.0000 9 6 5.5377 2.6167 0.0001 10 6 6.2560 2.1426 -1.1044 11 6 7.6139 2.2052 -1.1408 12 6 8.3264 2.7551 -0.0547 13 6 9.7286 2.8231 -0.0838 14 1 10.2453 3.5700 0.5008 15 6 10.4583 1.9210 -0.8722 16 7 9.9492 0.7559 -1.1727 17 14 12.1581 2.3855 -1.4925 18 1 12.7142 1.2678 -2.2965 19 1 12.0611 3.6031 -2.3370 20 1 13.0503 2.6549 -0.3364 21 6 7.5816 3.2489 1.1081 22 6 8.2720 3.8081 2.2312 23 7 8.8199 4.2513 3.1219 24 6 6.1933 3.1692 1.0997 25 6 3.4306 1.2836 -0.0005 26 9 4.1679 0.1514 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2114 2.3152 -0.0006 31 1 1.3152 4.5125 0.0000 32 1 5.7220 1.7196 -1.9425 33 1 8.1477 1.8339 -2.0031 34 1 9.1049 0.4804 -0.7826 35 1 5.6247 3.5305 1.9438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241142186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:46 Heat of formation + Delta-G solvation = -66.212569 kcal Electronic energy + Delta-G solvation = -24805.226328 eV Core-core repulsion = 20789.993190 eV Total energy + Delta-G solvation = -4015.233139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.54806 -48.46908 -39.92204 -38.25192 -37.02231 -35.25298 -34.51006 -31.59166 -30.12644 -30.02792 -28.75366 -27.35891 -25.63786 -22.86743 -22.60050 -22.20807 -20.77884 -18.55535 -18.32084 -17.62371 -17.32874 -16.73685 -16.21161 -15.49691 -15.32022 -15.10548 -14.82451 -14.75324 -14.58998 -14.23121 -14.14889 -13.85441 -13.05411 -12.96041 -12.73168 -12.49280 -12.21549 -12.14312 -12.01342 -11.98230 -11.75303 -11.44006 -11.40580 -10.97138 -10.90299 -10.78484 -10.56817 -10.14685 -9.93661 -9.41720 -8.77018 -8.08409 -8.04461 -7.84158 -7.58283 -4.92137 1.01316 1.14702 2.06938 2.42067 2.98390 3.00630 3.08495 3.19676 3.44652 3.72609 3.80758 3.97409 4.11769 4.32850 4.48107 4.64710 4.82210 4.92996 4.96660 5.09885 5.15583 5.24554 5.31470 5.59892 5.79242 5.84318 5.94964 6.00927 6.13728 6.18170 6.56220 6.60684 6.67223 6.94399 7.15780 7.21771 7.31185 7.37059 7.48895 7.66342 7.80391 8.22654 8.33493 8.70724 9.54805 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.003833 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.939597 B = 7303.100801 C = 8077.140734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.082 3.918 4 C -0.173 4.173 5 C -0.126 4.126 6 C 0.089 3.911 7 F -0.127 7.127 8 C -0.021 4.021 9 C -0.229 4.229 10 C -0.023 4.023 11 C -0.216 4.216 12 C 0.133 3.867 13 C -0.462 4.462 14 H 0.088 0.912 15 C 0.036 3.964 16 N -0.753 5.753 17 Si 1.067 2.933 18 H -0.268 1.268 19 H -0.268 1.268 20 H -0.270 1.270 21 C -0.189 4.189 22 C 0.299 3.701 23 N -0.503 5.503 24 C 0.023 3.977 25 C 0.097 3.903 26 F -0.117 7.117 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.309 0.691 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.765 -0.774 -3.073 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.036 3.964 4 C -0.192 4.192 5 C -0.146 4.146 6 C 0.070 3.930 7 F -0.105 7.105 8 C -0.023 4.023 9 C -0.231 4.231 10 C -0.043 4.043 11 C -0.235 4.235 12 C 0.127 3.873 13 C -0.487 4.487 14 H 0.106 0.894 15 C -0.192 4.192 16 N -0.373 5.373 17 Si 0.888 3.112 18 H -0.192 1.192 19 H -0.193 1.193 20 H -0.195 1.195 21 C -0.195 4.195 22 C -0.011 4.011 23 N -0.182 5.182 24 C 0.002 3.998 25 C 0.076 3.924 26 F -0.096 7.096 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.115 0.885 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.555 -0.890 -2.640 13.839 hybrid contribution -1.739 0.469 0.606 1.900 sum -15.294 -0.421 -2.035 15.435 Atomic orbital electron populations 1.23086 0.78303 1.04076 1.01344 1.86164 1.21378 1.25694 1.89026 1.18901 0.90589 0.85593 1.01358 1.20806 1.00020 0.90548 1.07826 1.20826 0.92534 0.98567 1.02623 1.17476 0.89902 0.80416 1.05255 1.91519 1.83940 1.41203 1.93842 1.18742 0.94887 0.89276 0.99407 1.17242 0.87747 1.18705 0.99366 1.20270 0.93993 0.94768 0.95234 1.20723 0.93235 1.10391 0.99162 1.18482 0.92569 0.87973 0.88308 1.20917 0.92132 1.13955 1.21729 0.89426 1.27431 1.06695 0.92370 0.92677 1.70401 1.19535 1.16942 1.30377 0.83589 0.72206 0.77514 0.77867 1.19184 1.19265 1.19539 1.16593 0.91157 1.19749 0.91976 1.25656 0.91976 0.91362 0.92059 1.81019 1.09685 1.14630 1.12889 1.20459 0.91961 0.92309 0.95074 1.16841 0.85218 0.82728 1.07572 1.91531 1.76543 1.47730 1.93772 0.88132 0.92546 0.92541 0.84128 0.84256 0.88528 0.86574 0.87672 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.99 10.36 -19.77 -0.20 -4.20 16 3 C 0.08 1.14 6.68 -39.25 -0.26 0.88 16 4 C -0.17 -1.93 9.03 -39.35 -0.36 -2.28 16 5 C -0.13 -1.52 10.01 -39.57 -0.40 -1.92 16 6 C 0.09 1.40 7.23 -39.00 -0.28 1.12 16 7 F -0.13 -2.16 16.64 2.25 0.04 -2.12 16 8 C -0.02 -0.37 5.28 -104.77 -0.55 -0.93 16 9 C -0.23 -4.66 4.73 -104.82 -0.50 -5.16 16 10 C -0.02 -0.49 9.38 -39.72 -0.37 -0.86 16 11 C -0.22 -4.86 7.88 -39.32 -0.31 -5.17 16 12 C 0.13 3.17 5.46 -104.61 -0.57 2.60 16 13 C -0.46 -11.15 8.48 -38.00 -0.32 -11.47 16 14 H 0.09 2.15 7.45 -52.48 -0.39 1.76 16 15 C 0.04 0.81 4.94 -17.29 -0.09 0.72 16 16 N -0.75 -17.68 12.31 55.57 0.68 -17.00 16 17 Si 1.07 19.44 30.01 -169.99 -5.10 14.34 16 18 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 19 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 20 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 21 C -0.19 -4.39 5.93 -104.27 -0.62 -5.01 16 22 C 0.30 7.13 14.30 -22.48 -0.32 6.80 16 23 N -0.50 -12.26 18.54 41.83 0.78 -11.48 16 24 C 0.02 0.49 9.20 -38.83 -0.36 0.13 16 25 C 0.10 1.64 7.24 -38.88 -0.28 1.36 16 26 F -0.12 -2.22 16.50 2.25 0.04 -2.18 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.14 1.07 6.27 -52.49 -0.33 0.74 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.12 2.63 6.49 -52.49 -0.34 2.29 16 34 H 0.31 7.42 6.68 -40.82 -0.27 7.15 16 35 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -26.99 325.79 -6.07 -33.06 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -2.62 Total: 2.68 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -4.59 Total: -18.01 kcal Atomic # 7 Polarization: -29.94 SS G_CDS: 1.46 Total: -28.48 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.30 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.10 Total: 14.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.99 -6.07 -33.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241142186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.154 kcal (2) G-P(sol) polarization free energy of solvation -26.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds