Wall clock time and date at job start Tue Mar 31 2020 11:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36010 * 116.99672 * 2 1 4 4 C 1.38774 * 119.96230 * 359.97363 * 3 2 1 5 5 C 1.38327 * 120.29444 * 179.97438 * 4 3 2 6 6 C 1.38173 * 120.22374 * 359.77022 * 5 4 3 7 7 F 1.35101 * 120.04272 * 180.27759 * 6 5 4 8 8 C 1.39845 * 119.91609 * 0.53091 * 6 5 4 9 9 C 1.47929 * 120.14592 * 179.72272 * 8 6 5 10 10 C 1.40023 * 119.50110 * 244.72565 * 9 8 6 11 11 C 1.35978 * 121.18772 * 179.97438 * 10 9 8 12 12 C 1.41067 * 120.11388 * 359.97438 * 11 10 9 13 13 C 1.40413 * 120.48778 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99960 * 154.62805 * 13 12 11 15 15 C 1.40281 * 119.99708 * 334.63469 * 13 12 11 16 16 N 1.30653 * 120.00114 * 334.60738 * 15 13 12 17 17 Si 1.86805 * 120.00091 * 154.61096 * 15 13 12 18 18 H 1.48498 * 109.47210 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47071 * 299.99963 * 17 15 13 20 20 H 1.48498 * 109.46903 * 59.99365 * 17 15 13 21 21 C 1.46652 * 119.02622 * 0.26731 * 12 11 10 22 22 C 1.43203 * 120.56302 * 179.72581 * 21 12 11 23 23 N 9.07996 * 144.48671 * 36.29121 * 2 1 3 24 24 C 1.39066 * 118.87628 * 359.50137 * 21 12 11 25 25 C 1.38610 * 119.96112 * 180.02562 * 3 2 1 26 26 F 1.35105 * 120.10835 * 359.97438 * 25 3 2 27 27 H 1.09006 * 109.46975 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47153 * 300.00082 * 1 2 3 29 29 H 1.09005 * 109.47533 * 60.00355 * 1 2 3 30 30 H 1.07999 * 119.85472 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.88596 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.40932 * 359.97438 * 10 9 8 33 33 H 1.07994 * 119.94694 * 180.02562 * 11 10 9 34 34 H 0.96998 * 119.99722 * 354.18693 * 16 15 13 35 35 H 1.08001 * 120.10444 * 180.24539 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2119 0.0000 4 6 1.2897 2.3752 -0.0006 5 6 1.9105 3.6114 0.0000 6 6 3.2895 3.6972 0.0059 7 9 3.8920 4.9064 0.0120 8 6 4.0609 2.5307 0.0000 9 6 5.5377 2.6167 0.0001 10 6 6.2560 2.1426 -1.1044 11 6 7.6139 2.2052 -1.1408 12 6 8.3264 2.7551 -0.0547 13 6 9.7286 2.8231 -0.0838 14 1 10.2453 3.5700 0.5008 15 6 10.4583 1.9210 -0.8722 16 7 9.9492 0.7559 -1.1727 17 14 12.1581 2.3855 -1.4925 18 1 12.7142 1.2678 -2.2965 19 1 12.0611 3.6031 -2.3370 20 1 13.0503 2.6549 -0.3364 21 6 7.5816 3.2489 1.1081 22 6 8.2720 3.8081 2.2312 23 7 8.8199 4.2513 3.1219 24 6 6.1933 3.1692 1.0997 25 6 3.4306 1.2836 -0.0005 26 9 4.1679 0.1514 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2114 2.3152 -0.0006 31 1 1.3152 4.5125 0.0000 32 1 5.7220 1.7196 -1.9425 33 1 8.1477 1.8339 -2.0031 34 1 9.1049 0.4804 -0.7826 35 1 5.6247 3.5305 1.9438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241142186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:45 Heat of formation + Delta-G solvation = -78.557210 kcal Electronic energy + Delta-G solvation = -24805.761632 eV Core-core repulsion = 20789.993190 eV Total energy + Delta-G solvation = -4015.768442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.81112 -49.78468 -40.93168 -39.88288 -38.21094 -37.13374 -36.16023 -33.03194 -31.87922 -31.10784 -30.21331 -28.13192 -27.22182 -24.38543 -24.04633 -23.49846 -22.28058 -20.26110 -19.59277 -18.81518 -18.49621 -18.14600 -17.29762 -16.83760 -16.71042 -16.50643 -16.23765 -15.96012 -15.81445 -15.63425 -15.40096 -15.28860 -14.80970 -14.41199 -14.27964 -13.88043 -13.85028 -13.66710 -13.34575 -13.25097 -13.04875 -12.97949 -12.59826 -12.51342 -12.12702 -11.98796 -11.95087 -11.73693 -11.59693 -11.09332 -10.09084 -9.81371 -9.56811 -9.35523 -9.11761 -6.74324 -0.13794 0.04057 0.26276 0.74228 1.48591 1.57406 1.78733 1.89029 2.11113 2.20726 2.22262 2.36849 2.54618 3.00648 3.33173 3.40881 3.42634 3.64927 3.87480 3.97075 4.07165 4.30924 4.38777 4.47046 4.47325 4.75737 4.79753 4.81032 4.87006 4.97340 4.99638 5.02358 5.15276 5.39857 5.45933 5.53083 5.66988 5.74665 5.89858 6.04358 6.28498 6.43021 6.54559 6.80912 7.73757 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.003833 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.939597 B = 7303.100801 C = 8077.140734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.088 3.912 4 C -0.148 4.148 5 C -0.104 4.104 6 C 0.072 3.928 7 F -0.140 7.140 8 C -0.050 4.050 9 C -0.213 4.213 10 C -0.024 4.024 11 C -0.224 4.224 12 C 0.117 3.883 13 C -0.495 4.495 14 H 0.074 0.926 15 C 0.011 3.989 16 N -0.769 5.769 17 Si 1.113 2.887 18 H -0.260 1.260 19 H -0.256 1.256 20 H -0.265 1.265 21 C -0.209 4.209 22 C 0.303 3.697 23 N -0.519 5.519 24 C 0.017 3.983 25 C 0.067 3.933 26 F -0.140 7.140 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.190 0.810 31 H 0.179 0.821 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.296 0.704 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.268 -0.377 -3.646 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.247 6.247 3 C 0.042 3.958 4 C -0.166 4.166 5 C -0.122 4.122 6 C 0.052 3.948 7 F -0.119 7.119 8 C -0.052 4.052 9 C -0.214 4.214 10 C -0.043 4.043 11 C -0.243 4.243 12 C 0.111 3.889 13 C -0.521 4.521 14 H 0.092 0.908 15 C -0.212 4.212 16 N -0.388 5.388 17 Si 0.928 3.072 18 H -0.184 1.184 19 H -0.180 1.180 20 H -0.189 1.189 21 C -0.215 4.215 22 C -0.006 4.006 23 N -0.199 5.199 24 C -0.004 4.004 25 C 0.047 3.953 26 F -0.118 7.118 27 H 0.135 0.865 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.207 0.793 31 H 0.197 0.803 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.099 -0.496 -3.204 17.403 hybrid contribution -1.060 0.294 0.804 1.363 sum -18.158 -0.202 -2.399 18.317 Atomic orbital electron populations 1.23518 0.75260 1.06056 1.03234 1.86157 1.24495 1.25378 1.88629 1.18982 0.89587 0.87142 1.00121 1.21341 1.02080 0.88815 1.04369 1.21255 0.90871 1.00526 0.99588 1.17714 0.91327 0.79178 1.06551 1.91488 1.84466 1.41783 1.94119 1.18621 0.93272 0.90758 1.02586 1.17575 0.89936 1.15776 0.98146 1.20528 0.93550 0.94161 0.96088 1.20708 0.93919 1.10924 0.98768 1.18736 0.92999 0.88308 0.88850 1.20973 0.92510 1.14972 1.23609 0.90777 1.28626 1.09175 0.91481 0.91912 1.70497 1.19327 1.17571 1.31455 0.83052 0.68489 0.77823 0.77822 1.18425 1.17998 1.18915 1.16795 0.92084 1.20739 0.91843 1.25819 0.91690 0.91057 0.92005 1.80987 1.10013 1.15439 1.13440 1.20668 0.91281 0.92461 0.95958 1.17092 0.86734 0.81739 1.09763 1.91466 1.77359 1.48784 1.94237 0.86486 0.90573 0.90471 0.79343 0.80344 0.86827 0.87153 0.89099 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -7.59 10.36 -93.66 -0.97 -8.56 16 3 C 0.09 2.19 6.68 22.49 0.15 2.34 16 4 C -0.15 -2.50 9.03 22.42 0.20 -2.30 16 5 C -0.10 -2.01 10.01 22.28 0.22 -1.78 16 6 C 0.07 2.10 7.23 22.64 0.16 2.26 16 7 F -0.14 -4.58 16.64 44.97 0.75 -3.83 16 8 C -0.05 -1.75 5.28 -19.96 -0.11 -1.85 16 9 C -0.21 -8.78 4.73 -19.99 -0.09 -8.88 16 10 C -0.02 -1.04 9.38 22.18 0.21 -0.83 16 11 C -0.22 -10.52 7.88 22.44 0.18 -10.34 16 12 C 0.12 5.85 5.46 -19.86 -0.11 5.74 16 13 C -0.49 -25.04 8.48 23.30 0.20 -24.85 16 14 H 0.07 3.84 7.45 -2.91 -0.02 3.82 16 15 C 0.01 0.49 4.94 85.37 0.42 0.92 16 16 N -0.77 -37.47 12.31 21.88 0.27 -37.20 16 17 Si 1.11 39.75 30.01 68.60 2.06 41.81 16 18 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 19 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 20 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 21 C -0.21 -10.07 5.93 -19.64 -0.12 -10.19 16 22 C 0.30 14.94 14.30 88.34 1.26 16.21 16 23 N -0.52 -25.94 18.54 19.00 0.35 -25.59 16 24 C 0.02 0.74 9.20 22.76 0.21 0.95 16 25 C 0.07 2.20 7.24 22.72 0.16 2.37 16 26 F -0.14 -5.37 16.50 44.97 0.74 -4.63 16 27 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.08 0.51 7.66 -2.39 -0.02 0.49 16 29 H 0.08 0.50 7.66 -2.38 -0.02 0.48 16 30 H 0.19 1.42 6.27 -2.91 -0.02 1.41 16 31 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 33 H 0.11 5.24 6.49 -2.91 -0.02 5.22 16 34 H 0.30 14.98 6.68 -92.71 -0.62 14.36 16 35 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -62.48 325.79 8.58 -53.89 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.32 Total: 13.10 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 4.07 Total: -28.99 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.62 Total: -62.79 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.97 Total: -8.56 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 1.49 Total: -8.46 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.06 Total: 41.81 kcal Total: -62.48 8.58 -53.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241142186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.665 kcal (2) G-P(sol) polarization free energy of solvation -62.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds