Wall clock time and date at job start Tue Mar 31 2020 11:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35841 * 117.00094 * 2 1 4 4 C 1.38830 * 119.89703 * 180.02562 * 3 2 1 5 5 C 1.38121 * 120.09626 * 180.02562 * 4 3 2 6 6 F 1.35102 * 120.04763 * 179.97438 * 5 4 3 7 7 C 1.39651 * 119.89854 * 0.27664 * 5 4 3 8 8 C 1.48180 * 120.09851 * 179.72428 * 7 5 4 9 9 C 1.39882 * 119.54272 * 64.99692 * 8 7 5 10 10 C 1.37671 * 121.16423 * 179.97438 * 9 8 7 11 11 C 1.39611 * 120.19489 * 0.03498 * 10 9 8 12 12 C 1.43201 * 120.45396 * 180.02562 * 11 10 9 13 13 N 9.62544 * 147.93187 * 179.05900 * 3 1 2 14 14 C 1.46557 * 119.09837 * 359.97438 * 11 10 9 15 15 C 1.40851 * 120.55464 * 179.97438 * 14 11 10 16 16 H 1.08005 * 119.99675 * 24.36899 * 15 14 11 17 17 C 1.40226 * 120.00024 * 204.36612 * 15 14 11 18 18 N 1.30660 * 120.00080 * 17.29015 * 17 15 14 19 19 Si 1.86804 * 119.99810 * 197.28949 * 17 15 14 20 20 H 1.48500 * 109.47082 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47004 * 120.00006 * 19 17 15 22 22 H 1.48501 * 109.47195 * 240.00272 * 19 17 15 23 23 C 1.38683 * 119.54277 * 244.72674 * 8 7 5 24 24 C 1.39665 * 119.80576 * 359.42360 * 7 5 4 25 25 F 1.35098 * 120.05024 * 180.29744 * 24 7 5 26 26 C 1.38120 * 119.89493 * 0.57478 * 24 7 5 27 27 H 1.08993 * 109.46792 * 299.99995 * 1 2 3 28 28 H 1.09005 * 109.46733 * 59.99765 * 1 2 3 29 29 H 1.08999 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.95482 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.41485 * 359.97438 * 9 8 7 32 32 H 1.08008 * 119.90161 * 180.02562 * 10 9 8 33 33 H 0.96998 * 120.00106 * 184.51710 * 18 17 15 34 34 H 1.08002 * 120.13277 * 359.97438 * 23 8 7 35 35 H 1.08002 * 119.94502 * 179.69753 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 3.4323 1.2805 -0.0005 5 6 4.0637 2.5090 0.0000 6 9 5.4130 2.5761 0.0000 7 6 3.3051 3.6815 0.0069 8 6 3.9779 5.0017 0.0137 9 6 4.7485 5.3888 -1.0876 10 6 5.3876 6.6079 -1.1169 11 6 5.2758 7.4853 -0.0368 12 6 5.9377 8.7550 -0.0616 13 7 6.4642 9.7614 -0.0839 14 6 4.4710 7.0899 1.1224 15 6 4.3378 7.9511 2.2290 16 1 4.4709 9.0156 2.1039 17 6 4.0325 7.4264 3.4930 18 7 4.2006 6.1524 3.7296 19 14 3.3855 8.5488 4.8388 20 1 3.2856 9.9367 4.3202 21 1 2.0424 8.0834 5.2683 22 1 4.3138 8.5185 5.9975 23 6 3.8301 5.8389 1.1094 24 6 1.9105 3.6061 0.0011 25 9 1.1719 4.7373 0.0017 26 6 1.2877 2.3733 0.0005 27 1 -0.3632 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0182 0.3732 -0.0014 31 1 4.8439 4.7194 -1.9298 32 1 5.9772 6.8862 -1.9780 33 1 3.9283 5.7772 4.5816 34 1 3.2281 5.5293 1.9510 35 1 0.2093 2.3141 0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241693179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:35 Heat of formation + Delta-G solvation = -60.580858 kcal Electronic energy + Delta-G solvation = -24924.047892 eV Core-core repulsion = 20909.058963 eV Total energy + Delta-G solvation = -4014.988929 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.68034 -48.64808 -40.07357 -38.04949 -36.82561 -35.09486 -34.13044 -31.64602 -30.47235 -29.96089 -28.54601 -27.19396 -25.80008 -23.35237 -22.59170 -21.24013 -20.95988 -18.71314 -17.80360 -17.39324 -17.16895 -16.26224 -16.14927 -15.95652 -15.61665 -15.38761 -15.15506 -14.95410 -14.49730 -14.27138 -13.96970 -13.33622 -13.01687 -12.81431 -12.73253 -12.65952 -12.30503 -12.05260 -11.82875 -11.71513 -11.60759 -11.51489 -11.39004 -11.20018 -10.85672 -10.68000 -10.57557 -10.05411 -9.83858 -9.50156 -8.71575 -8.31254 -7.79392 -7.48036 -7.14115 -4.72879 1.06834 1.13286 2.05224 2.63349 2.92696 2.93215 2.99049 3.03997 3.45866 3.70286 3.91853 4.04307 4.15004 4.45317 4.48783 4.81127 4.88720 4.93316 4.97665 5.03649 5.17539 5.29551 5.39327 5.46057 5.91800 5.98258 6.05666 6.12303 6.14323 6.32662 6.66313 6.68878 6.79824 6.93586 7.10942 7.17131 7.44575 7.64435 7.68725 7.82945 8.17053 8.41412 8.51056 8.82352 9.74729 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.004591 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.606783 B = 6097.133283 C = 7213.696442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.172 3.828 4 C -0.203 4.203 5 C 0.180 3.820 6 F -0.115 7.115 7 C -0.121 4.121 8 C -0.025 4.025 9 C -0.225 4.225 10 C -0.027 4.027 11 C -0.183 4.183 12 C 0.301 3.699 13 N -0.509 5.509 14 C 0.150 3.850 15 C -0.427 4.427 16 H 0.087 0.913 17 C 0.076 3.924 18 N -0.763 5.763 19 Si 0.913 3.087 20 H -0.255 1.255 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.129 4.129 24 C 0.177 3.823 25 F -0.119 7.119 26 C -0.259 4.259 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.147 0.853 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.290 0.710 34 H 0.128 0.872 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 -13.580 -3.156 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.126 3.874 4 C -0.222 4.222 5 C 0.160 3.840 6 F -0.093 7.093 7 C -0.123 4.123 8 C -0.026 4.026 9 C -0.245 4.245 10 C -0.048 4.048 11 C -0.189 4.189 12 C -0.009 4.009 13 N -0.189 5.189 14 C 0.144 3.856 15 C -0.455 4.455 16 H 0.105 0.895 17 C -0.146 4.146 18 N -0.386 5.386 19 Si 0.735 3.265 20 H -0.178 1.178 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.148 4.148 24 C 0.157 3.843 25 F -0.097 7.097 26 C -0.279 4.279 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.165 0.835 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.176 -12.340 -2.975 15.099 hybrid contribution -0.656 0.231 0.714 0.997 sum -8.832 -12.108 -2.261 15.157 Atomic orbital electron populations 1.23130 0.77959 1.04103 1.01838 1.86063 1.21713 1.26103 1.88393 1.18142 0.91003 0.83753 0.94468 1.20114 0.92242 0.97593 1.12274 1.16904 0.77423 0.91786 0.97921 1.91563 1.27774 1.97014 1.92994 1.19009 0.91445 0.94516 1.07359 1.18110 0.98248 0.90573 0.95650 1.20017 1.07615 0.98073 0.98767 1.20338 0.96374 0.92749 0.95346 1.16979 1.09993 0.91043 1.00906 1.25778 0.91553 0.92427 0.91140 1.81017 1.14022 1.12731 1.11099 1.18318 0.86342 0.91239 0.89661 1.19808 1.38212 0.95807 0.91647 0.89476 1.26092 0.92521 0.95767 1.00268 1.69725 1.30074 1.13635 1.25140 0.86150 0.79305 0.81412 0.79585 1.17845 1.19072 1.19393 1.21312 1.02104 0.94511 0.96892 1.17012 0.87638 0.81774 0.97838 1.91556 1.76038 1.49057 1.93011 1.21025 1.01163 0.90834 1.14867 0.92247 0.92304 0.88037 0.83534 0.88446 0.88017 0.89830 0.85440 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.40 10.49 -19.24 -0.20 -3.60 16 3 C 0.17 2.21 6.69 -39.15 -0.26 1.95 16 4 C -0.20 -2.78 9.95 -39.41 -0.39 -3.17 16 5 C 0.18 2.97 7.23 -39.10 -0.28 2.69 16 6 F -0.12 -2.04 16.65 2.25 0.04 -2.01 16 7 C -0.12 -2.21 5.28 -104.75 -0.55 -2.76 16 8 C -0.02 -0.52 4.70 -105.03 -0.49 -1.02 16 9 C -0.23 -4.58 9.44 -39.17 -0.37 -4.95 16 10 C -0.03 -0.57 9.74 -39.28 -0.38 -0.95 16 11 C -0.18 -4.28 5.95 -104.11 -0.62 -4.90 16 12 C 0.30 7.18 14.28 -22.47 -0.32 6.86 16 13 N -0.51 -12.45 18.54 41.84 0.78 -11.68 16 14 C 0.15 3.69 5.73 -104.68 -0.60 3.09 16 15 C -0.43 -10.59 8.58 -37.85 -0.32 -10.92 16 16 H 0.09 2.19 7.37 -52.48 -0.39 1.80 16 17 C 0.08 1.75 5.16 -17.30 -0.09 1.66 16 18 N -0.76 -17.80 10.94 55.56 0.61 -17.19 16 19 Si 0.91 17.43 29.60 -169.99 -5.03 12.40 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.13 -3.02 8.14 -38.54 -0.31 -3.34 16 24 C 0.18 2.91 7.23 -39.09 -0.28 2.63 16 25 F -0.12 -2.10 16.64 2.25 0.04 -2.06 16 26 C -0.26 -3.40 9.00 -39.41 -0.35 -3.75 16 27 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 28 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 34 H 0.13 3.07 6.17 -52.49 -0.32 2.75 16 35 H 0.14 1.47 6.27 -52.49 -0.33 1.14 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -27.04 326.82 -6.16 -33.20 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -2.66 Total: 1.75 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -4.65 Total: -15.74 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 1.38 Total: -28.87 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.20 Total: -3.60 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.07 Total: -4.06 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.04 -6.16 -33.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241693179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.380 kcal (2) G-P(sol) polarization free energy of solvation -27.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds