Wall clock time and date at job start Tue Mar 31 2020 11:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35799 * 116.99828 * 2 1 4 4 C 1.38931 * 119.87569 * 179.97438 * 3 2 1 5 5 C 1.38016 * 120.11525 * 179.97438 * 4 3 2 6 6 F 1.35100 * 120.05596 * 179.97438 * 5 4 3 7 7 C 1.39933 * 119.88090 * 0.02562 * 5 4 3 8 8 C 1.47799 * 120.12045 * 179.97438 * 7 5 4 9 9 C 1.40087 * 119.50889 * 294.97437 * 8 7 5 10 10 C 1.35933 * 121.18836 * 179.73359 * 9 8 7 11 11 C 1.41084 * 120.11277 * 0.56725 * 10 9 8 12 12 C 1.40378 * 120.48134 * 179.71598 * 11 10 9 13 13 H 1.07998 * 120.00702 * 205.27882 * 12 11 10 14 14 C 1.40255 * 119.99710 * 25.26734 * 12 11 10 15 15 N 1.30668 * 120.00215 * 17.09399 * 14 12 11 16 16 Si 1.86802 * 120.00015 * 197.08675 * 14 12 11 17 17 H 1.48499 * 109.47054 * 265.18534 * 16 14 12 18 18 H 1.48493 * 109.47447 * 25.18495 * 16 14 12 19 19 H 1.48502 * 109.47242 * 145.18836 * 16 14 12 20 20 C 1.46674 * 119.04307 * 359.44645 * 11 10 9 21 21 C 1.43202 * 120.55966 * 180.29421 * 20 11 10 22 22 N 9.61821 * 106.82026 * 340.21260 * 2 1 3 23 23 C 1.39028 * 118.87700 * 0.26873 * 20 11 10 24 24 C 1.39945 * 119.76084 * 0.24820 * 7 5 4 25 25 F 1.35100 * 120.06092 * 179.74813 * 24 7 5 26 26 C 1.38013 * 119.87496 * 359.45489 * 24 7 5 27 27 H 1.09001 * 109.47126 * 59.99846 * 1 2 3 28 28 H 1.08999 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47253 * 299.99955 * 1 2 3 30 30 H 1.07998 * 119.94199 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.40649 * 0.02562 * 9 8 7 32 32 H 1.07995 * 119.94383 * 180.31056 * 10 9 8 33 33 H 0.96997 * 120.00166 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.10359 * 179.97438 * 23 20 11 35 35 H 1.08003 * 119.93564 * 180.29229 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4330 1.2797 0.0005 5 6 4.0647 2.5069 0.0000 6 9 5.4141 2.5733 0.0011 7 6 3.3050 3.6820 -0.0005 8 6 3.9760 4.9989 -0.0005 9 6 4.7474 5.3803 1.1049 10 6 5.3836 6.5811 1.1387 11 6 5.2652 7.4756 0.0541 12 6 5.9140 8.7201 0.0835 13 1 5.5293 9.5437 -0.4997 14 6 7.0619 8.8941 0.8705 15 7 7.7204 7.8524 1.3047 16 14 7.6493 10.6151 1.2978 17 1 8.6818 11.0428 0.3198 18 1 6.5017 11.5562 1.2493 19 1 8.2316 10.6145 2.6639 20 6 4.4594 7.0841 -1.1071 21 6 4.3223 7.9642 -2.2284 22 7 4.2122 8.6631 -3.1168 23 6 3.8312 5.8438 -1.1011 24 6 1.9077 3.6058 0.0047 25 9 1.1683 4.7366 0.0094 26 6 1.2863 2.3735 -0.0010 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0184 0.3721 0.0014 31 1 4.8423 4.7061 1.9433 32 1 5.9772 6.8526 1.9990 33 1 8.5144 7.9728 1.8487 34 1 3.2327 5.5356 -1.9456 35 1 0.2080 2.3136 -0.0017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241693439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:49 Heat of formation + Delta-G solvation = -61.769204 kcal Electronic energy + Delta-G solvation = -24617.345921 eV Core-core repulsion = 20602.305461 eV Total energy + Delta-G solvation = -4015.040460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.65378 -48.59788 -40.03925 -38.04791 -36.81456 -35.12564 -34.23975 -31.40167 -30.45969 -29.93854 -28.92092 -27.50045 -25.43750 -22.87045 -22.43644 -22.08002 -20.73463 -18.69577 -17.83594 -17.38641 -17.25008 -16.20461 -16.13785 -15.66294 -15.59496 -15.35436 -15.17038 -14.93286 -14.47874 -14.33782 -13.98852 -13.79624 -12.93779 -12.78877 -12.69967 -12.43866 -12.29551 -12.00580 -11.99022 -11.78234 -11.61355 -11.52899 -11.43504 -11.20337 -10.83314 -10.71793 -10.58318 -10.00897 -9.87120 -9.56670 -8.70284 -8.23857 -7.79665 -7.54155 -7.22463 -4.79080 1.09175 1.18807 2.17675 2.54963 2.88064 2.90972 2.95350 2.98056 3.49466 3.63773 3.89663 4.09002 4.18391 4.40728 4.51742 4.82213 4.90230 4.92685 5.01334 5.10798 5.18845 5.31291 5.40147 5.46223 5.92823 6.00182 6.06231 6.16626 6.20170 6.27229 6.61097 6.70952 6.79370 6.94066 7.16216 7.17812 7.43369 7.60205 7.72545 7.81079 8.16265 8.34675 8.50012 8.80112 9.65462 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.003550 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.180084 B = 7884.456450 C = 8526.690335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.165 3.835 4 C -0.201 4.201 5 C 0.167 3.833 6 F -0.117 7.117 7 C -0.094 4.094 8 C -0.211 4.211 9 C -0.046 4.046 10 C -0.165 4.165 11 C 0.158 3.842 12 C -0.419 4.419 13 H 0.088 0.912 14 C 0.074 3.926 15 N -0.753 5.753 16 Si 0.916 3.084 17 H -0.264 1.264 18 H -0.254 1.254 19 H -0.269 1.269 20 C -0.189 4.189 21 C 0.301 3.699 22 N -0.508 5.508 23 C 0.008 3.992 24 C 0.164 3.836 25 F -0.122 7.122 26 C -0.258 4.258 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.293 0.707 34 H 0.098 0.902 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 -12.548 3.640 15.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.119 3.881 4 C -0.220 4.220 5 C 0.147 3.853 6 F -0.095 7.095 7 C -0.096 4.096 8 C -0.213 4.213 9 C -0.065 4.065 10 C -0.184 4.184 11 C 0.152 3.848 12 C -0.446 4.446 13 H 0.106 0.894 14 C -0.150 4.150 15 N -0.374 5.374 16 Si 0.739 3.261 17 H -0.189 1.189 18 H -0.178 1.178 19 H -0.193 1.193 20 C -0.195 4.195 21 C -0.008 4.008 22 N -0.187 5.187 23 C -0.013 4.013 24 C 0.144 3.856 25 F -0.100 7.100 26 C -0.277 4.277 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.162 0.838 31 H 0.112 0.888 32 H 0.145 0.855 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.943 -11.688 2.398 14.333 hybrid contribution 0.249 0.644 0.565 0.893 sum -7.693 -11.043 2.964 13.781 Atomic orbital electron populations 1.23111 0.78062 1.04031 1.01756 1.86047 1.21617 1.26202 1.88514 1.18168 0.90992 0.83707 0.95257 1.20125 0.92186 0.97653 1.12085 1.17103 0.77477 0.91977 0.98717 1.91559 1.27827 1.97019 1.93076 1.18845 0.90856 0.94113 1.05781 1.17306 1.11446 0.93660 0.98881 1.20359 0.94707 0.96052 0.95414 1.20860 1.03373 0.94774 0.99373 1.18481 0.86761 0.91780 0.87762 1.19810 1.06725 0.97336 1.20680 0.89378 1.26177 0.95823 0.99889 0.93101 1.69728 1.12901 1.32287 1.22507 0.86121 0.80016 0.81056 0.78904 1.18906 1.17780 1.19324 1.16698 1.16274 0.94349 0.92195 1.25712 0.91049 0.92040 0.92039 1.81006 1.13659 1.11069 1.12993 1.20433 0.94375 0.91227 0.95260 1.17188 0.87973 0.81579 0.98821 1.91534 1.76039 1.49253 1.93162 1.21023 1.01018 0.90953 1.14732 0.92363 0.88099 0.92346 0.83755 0.88847 0.85538 0.89589 0.88398 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.38 10.49 -19.11 -0.20 -3.59 16 3 C 0.16 2.07 6.69 -39.07 -0.26 1.81 16 4 C -0.20 -2.71 9.95 -39.41 -0.39 -3.11 16 5 C 0.17 2.70 7.23 -39.03 -0.28 2.41 16 6 F -0.12 -2.05 16.66 2.25 0.04 -2.01 16 7 C -0.09 -1.65 5.28 -104.71 -0.55 -2.20 16 8 C -0.21 -4.31 4.72 -104.82 -0.49 -4.80 16 9 C -0.05 -0.97 9.38 -39.72 -0.37 -1.34 16 10 C -0.16 -3.77 8.62 -39.33 -0.34 -4.11 16 11 C 0.16 3.82 5.73 -104.61 -0.60 3.22 16 12 C -0.42 -10.14 8.55 -38.02 -0.32 -10.47 16 13 H 0.09 2.16 7.39 -52.49 -0.39 1.77 16 14 C 0.07 1.66 5.15 -17.29 -0.09 1.57 16 15 N -0.75 -17.00 10.96 55.56 0.61 -16.39 16 16 Si 0.92 16.89 29.59 -169.99 -5.03 11.86 16 17 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 18 H -0.25 -4.75 7.11 56.52 0.40 -4.35 16 19 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 20 C -0.19 -4.42 5.93 -104.27 -0.62 -5.04 16 21 C 0.30 7.18 14.30 -22.48 -0.32 6.86 16 22 N -0.51 -12.39 18.54 41.82 0.78 -11.61 16 23 C 0.01 0.17 9.23 -38.82 -0.36 -0.19 16 24 C 0.16 2.59 7.23 -39.02 -0.28 2.31 16 25 F -0.12 -2.06 16.66 2.25 0.04 -2.02 16 26 C -0.26 -3.29 8.99 -39.41 -0.35 -3.64 16 27 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 30 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 32 H 0.13 2.92 6.19 -52.49 -0.33 2.59 16 33 H 0.29 5.89 8.29 -40.82 -0.34 5.55 16 34 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 35 H 0.14 1.42 6.27 -52.48 -0.33 1.09 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -26.30 326.77 -6.16 -32.46 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -2.66 Total: 1.90 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -4.65 Total: -15.53 kcal Atomic # 7 Polarization: -29.39 SS G_CDS: 1.38 Total: -28.00 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -0.20 Total: -3.59 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.30 -6.16 -32.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241693439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.305 kcal (2) G-P(sol) polarization free energy of solvation -26.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds