Wall clock time and date at job start Tue Mar 31 2020 11:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35799 * 116.99828 * 2 1 4 4 C 1.38931 * 119.87569 * 179.97438 * 3 2 1 5 5 C 1.38016 * 120.11525 * 179.97438 * 4 3 2 6 6 F 1.35100 * 120.05596 * 179.97438 * 5 4 3 7 7 C 1.39933 * 119.88090 * 0.02562 * 5 4 3 8 8 C 1.47799 * 120.12045 * 179.97438 * 7 5 4 9 9 C 1.40087 * 119.50889 * 294.97437 * 8 7 5 10 10 C 1.35933 * 121.18836 * 179.73359 * 9 8 7 11 11 C 1.41084 * 120.11277 * 0.56725 * 10 9 8 12 12 C 1.40378 * 120.48134 * 179.71598 * 11 10 9 13 13 H 1.07998 * 120.00702 * 205.27882 * 12 11 10 14 14 C 1.40255 * 119.99710 * 25.26734 * 12 11 10 15 15 N 1.30668 * 120.00215 * 17.09399 * 14 12 11 16 16 Si 1.86802 * 120.00015 * 197.08675 * 14 12 11 17 17 H 1.48499 * 109.47054 * 265.18534 * 16 14 12 18 18 H 1.48493 * 109.47447 * 25.18495 * 16 14 12 19 19 H 1.48502 * 109.47242 * 145.18836 * 16 14 12 20 20 C 1.46674 * 119.04307 * 359.44645 * 11 10 9 21 21 C 1.43202 * 120.55966 * 180.29421 * 20 11 10 22 22 N 9.61821 * 106.82026 * 340.21260 * 2 1 3 23 23 C 1.39028 * 118.87700 * 0.26873 * 20 11 10 24 24 C 1.39945 * 119.76084 * 0.24820 * 7 5 4 25 25 F 1.35100 * 120.06092 * 179.74813 * 24 7 5 26 26 C 1.38013 * 119.87496 * 359.45489 * 24 7 5 27 27 H 1.09001 * 109.47126 * 59.99846 * 1 2 3 28 28 H 1.08999 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47253 * 299.99955 * 1 2 3 30 30 H 1.07998 * 119.94199 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.40649 * 0.02562 * 9 8 7 32 32 H 1.07995 * 119.94383 * 180.31056 * 10 9 8 33 33 H 0.96997 * 120.00166 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.10359 * 179.97438 * 23 20 11 35 35 H 1.08003 * 119.93564 * 180.29229 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4330 1.2797 0.0005 5 6 4.0647 2.5069 0.0000 6 9 5.4141 2.5733 0.0011 7 6 3.3050 3.6820 -0.0005 8 6 3.9760 4.9989 -0.0005 9 6 4.7474 5.3803 1.1049 10 6 5.3836 6.5811 1.1387 11 6 5.2652 7.4756 0.0541 12 6 5.9140 8.7201 0.0835 13 1 5.5293 9.5437 -0.4997 14 6 7.0619 8.8941 0.8705 15 7 7.7204 7.8524 1.3047 16 14 7.6493 10.6151 1.2978 17 1 8.6818 11.0428 0.3198 18 1 6.5017 11.5562 1.2493 19 1 8.2316 10.6145 2.6639 20 6 4.4594 7.0841 -1.1071 21 6 4.3223 7.9642 -2.2284 22 7 4.2122 8.6631 -3.1168 23 6 3.8312 5.8438 -1.1011 24 6 1.9077 3.6058 0.0047 25 9 1.1683 4.7366 0.0094 26 6 1.2863 2.3735 -0.0010 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0184 0.3721 0.0014 31 1 4.8423 4.7061 1.9433 32 1 5.9772 6.8526 1.9990 33 1 8.5144 7.9728 1.8487 34 1 3.2327 5.5356 -1.9456 35 1 0.2080 2.3136 -0.0017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241693439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:48 Heat of formation + Delta-G solvation = -73.002685 kcal Electronic energy + Delta-G solvation = -24617.833041 eV Core-core repulsion = 20602.305461 eV Total energy + Delta-G solvation = -4015.527580 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.92138 -49.89253 -41.01439 -39.64696 -38.03269 -36.98084 -35.88731 -32.88404 -31.74512 -31.50649 -30.31894 -28.35085 -26.93644 -24.25658 -23.90604 -23.43663 -22.28895 -19.77355 -19.55114 -18.90399 -18.46554 -17.34847 -17.26810 -17.05704 -16.80114 -16.57040 -16.37563 -16.22963 -15.89278 -15.68390 -15.39745 -15.28023 -14.58714 -14.56642 -13.96353 -13.78879 -13.58887 -13.53883 -13.36549 -13.21782 -13.10408 -13.00510 -12.76856 -12.50737 -12.22680 -12.15280 -11.82783 -11.67682 -11.50589 -11.20266 -9.83798 -9.64095 -9.52098 -9.06791 -8.89653 -6.57971 -0.03759 0.00241 0.40154 0.89367 1.35698 1.44772 1.51198 1.99031 2.09855 2.11452 2.27758 2.40079 2.61191 3.03670 3.41927 3.48264 3.57302 3.82587 3.90800 3.99051 4.18427 4.26072 4.40455 4.46473 4.51276 4.80216 4.88875 4.90758 4.95237 4.98806 5.03312 5.06161 5.20123 5.42301 5.53196 5.74589 5.84676 6.00301 6.05703 6.26867 6.39175 6.57645 6.73051 6.92003 8.01656 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.003550 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.180084 B = 7884.456450 C = 8526.690335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.181 3.819 4 C -0.194 4.194 5 C 0.157 3.843 6 F -0.131 7.131 7 C -0.127 4.127 8 C -0.197 4.197 9 C -0.046 4.046 10 C -0.177 4.177 11 C 0.137 3.863 12 C -0.452 4.452 13 H 0.074 0.926 14 C 0.044 3.956 15 N -0.776 5.776 16 Si 0.981 3.019 17 H -0.263 1.263 18 H -0.261 1.261 19 H -0.250 1.250 20 C -0.210 4.210 21 C 0.306 3.694 22 N -0.526 5.526 23 C 0.002 3.998 24 C 0.156 3.844 25 F -0.133 7.133 26 C -0.242 4.242 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.165 0.835 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.304 0.696 34 H 0.112 0.888 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 -14.733 4.371 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.227 6.227 3 C 0.134 3.866 4 C -0.213 4.213 5 C 0.138 3.862 6 F -0.109 7.109 7 C -0.129 4.129 8 C -0.199 4.199 9 C -0.065 4.065 10 C -0.197 4.197 11 C 0.131 3.869 12 C -0.478 4.478 13 H 0.092 0.908 14 C -0.178 4.178 15 N -0.398 5.398 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.185 1.185 19 H -0.173 1.173 20 C -0.216 4.216 21 C -0.003 4.003 22 N -0.206 5.206 23 C -0.019 4.019 24 C 0.137 3.863 25 F -0.111 7.111 26 C -0.261 4.261 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.088 0.912 30 H 0.183 0.817 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.245 -13.906 3.130 16.989 hybrid contribution 0.478 1.021 0.348 1.180 sum -8.767 -12.885 3.477 15.968 Atomic orbital electron populations 1.23515 0.75632 1.06268 1.02823 1.86076 1.24027 1.24892 1.87729 1.18204 0.90751 0.84434 0.93183 1.20293 0.92986 0.97236 1.10802 1.17190 0.76868 0.92533 0.99648 1.91523 1.28911 1.97131 1.93374 1.18742 0.91835 0.93027 1.09247 1.17586 1.09860 0.94721 0.97698 1.20610 0.94046 0.95575 0.96252 1.20854 1.04235 0.95522 0.99040 1.18744 0.87360 0.92378 0.88397 1.19896 1.08275 0.97207 1.22465 0.90814 1.26849 0.95173 1.03383 0.92431 1.69719 1.13442 1.33899 1.22726 0.85188 0.79105 0.76291 0.79393 1.18819 1.18479 1.17344 1.16892 1.17419 0.95243 0.92092 1.25888 0.90622 0.91830 0.91971 1.80973 1.14522 1.11472 1.13598 1.20636 0.94389 0.90714 0.96145 1.17298 0.87280 0.82303 0.99450 1.91510 1.76120 1.50091 1.93381 1.21255 1.02612 0.89537 1.12740 0.91300 0.85522 0.91184 0.81730 0.87044 0.86128 0.88415 0.87043 0.80993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.31 -5.50 10.49 -91.30 -0.96 -6.46 16 3 C 0.18 3.91 6.69 22.60 0.15 4.06 16 4 C -0.19 -4.71 9.95 22.38 0.22 -4.49 16 5 C 0.16 4.87 7.23 22.63 0.16 5.03 16 6 F -0.13 -4.54 16.66 44.97 0.75 -3.79 16 7 C -0.13 -4.32 5.28 -19.92 -0.11 -4.42 16 8 C -0.20 -8.08 4.72 -20.00 -0.09 -8.18 16 9 C -0.05 -1.95 9.38 22.18 0.21 -1.74 16 10 C -0.18 -8.38 8.62 22.43 0.19 -8.18 16 11 C 0.14 6.89 5.73 -19.86 -0.11 6.77 16 12 C -0.45 -22.81 8.55 23.28 0.20 -22.61 16 13 H 0.07 3.81 7.39 -2.91 -0.02 3.79 16 14 C 0.04 2.00 5.15 85.36 0.44 2.44 16 15 N -0.78 -35.62 10.96 21.88 0.24 -35.38 16 16 Si 0.98 34.91 29.59 68.60 2.03 36.94 16 17 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 18 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 19 H -0.25 -8.08 7.11 99.48 0.71 -7.37 16 20 C -0.21 -10.18 5.93 -19.64 -0.12 -10.29 16 21 C 0.31 15.08 14.30 88.34 1.26 16.34 16 22 N -0.53 -26.32 18.54 19.00 0.35 -25.97 16 23 C 0.00 0.08 9.23 22.76 0.21 0.29 16 24 C 0.16 4.66 7.23 22.63 0.16 4.82 16 25 F -0.13 -4.35 16.66 44.97 0.75 -3.60 16 26 C -0.24 -5.35 8.99 22.38 0.20 -5.15 16 27 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 28 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.52 7.65 -2.39 -0.02 0.51 16 30 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 32 H 0.12 5.75 6.19 -2.91 -0.02 5.73 16 33 H 0.30 12.25 8.29 -92.71 -0.77 11.48 16 34 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.17 2.68 6.27 -2.91 -0.02 2.66 16 Total: -1.00 -58.35 326.77 8.43 -49.92 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.17 Total: 12.41 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 4.10 Total: -24.08 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.59 Total: -61.35 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.96 Total: -6.46 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 1.50 Total: -7.39 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -58.35 8.43 -49.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241693439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.078 kcal (2) G-P(sol) polarization free energy of solvation -58.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds