Wall clock time and date at job start Tue Mar 31 2020 11:21:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.35604 * 116.99770 * 2 1
4 4 C 1.38816 * 120.02923 * 359.97438 * 3 2 1
5 5 C 1.37784 * 120.23051 * 179.76009 * 4 3 2
6 6 C 1.39709 * 120.27308 * 0.51518 * 5 4 3
7 7 C 1.48256 * 119.97436 * 179.76098 * 6 5 4
8 8 C 1.39448 * 119.65220 * 359.72409 * 7 6 5
9 9 C 1.38206 * 119.14312 * 179.70106 * 8 7 6
10 10 C 1.39440 * 118.45732 * 0.27335 * 9 8 7
11 11 O 1.35722 * 120.38149 * 179.97438 * 10 9 8
12 12 C 1.34817 * 117.00280 * 354.52667 * 11 10 9
13 13 H 1.07995 * 119.99431 * 5.04757 * 12 11 10
14 14 C 1.38647 * 120.00116 * 185.05186 * 12 11 10
15 15 N 1.31554 * 119.99777 * 179.97438 * 14 12 11
16 16 Si 1.86799 * 120.00008 * 359.97438 * 14 12 11
17 17 H 1.48497 * 109.47310 * 89.99760 * 16 14 12
18 18 H 1.48498 * 109.47395 * 209.99947 * 16 14 12
19 19 H 1.48504 * 109.47364 * 329.99911 * 16 14 12
20 20 C 1.38928 * 119.23607 * 0.02562 * 10 9 8
21 21 N 1.31688 * 120.79030 * 0.02562 * 20 10 9
22 22 C 1.38986 * 120.04532 * 359.48544 * 6 5 4
23 23 C 1.39521 * 119.77962 * 0.25459 * 22 6 5
24 24 C 1.47426 * 120.14132 * 179.97438 * 23 22 6
25 25 O 1.21505 * 120.00414 * 179.97438 * 24 23 22
26 26 O 1.34753 * 119.99724 * 359.97438 * 24 23 22
27 27 H 1.08997 * 109.46994 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47421 * 299.99850 * 1 2 3
29 29 H 1.09001 * 109.47067 * 59.99541 * 1 2 3
30 30 H 1.08008 * 119.88639 * 359.97438 * 4 3 2
31 31 H 1.07995 * 119.86632 * 180.27913 * 5 4 3
32 32 H 1.07997 * 120.43043 * 359.97351 * 8 7 6
33 33 H 1.08003 * 120.77115 * 180.29696 * 9 8 7
34 34 H 0.97008 * 119.99685 * 180.02562 * 15 14 12
35 35 H 1.07997 * 119.60888 * 180.02562 * 20 10 9
36 36 H 1.08008 * 120.10832 * 180.27812 * 22 6 5
37 37 H 0.96693 * 117.00260 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0445 1.2083 0.0000
4 6 1.2890 2.3728 -0.0005
5 6 1.9102 3.6027 0.0044
6 6 3.3047 3.6875 -0.0008
7 6 3.9661 5.0143 -0.0007
8 6 3.1893 6.1724 -0.0013
9 6 3.8169 7.4038 0.0051
10 6 5.2108 7.4391 0.0060
11 8 5.8673 8.6270 0.0116
12 6 5.1170 9.7416 -0.0984
13 1 4.0395 9.6687 -0.1036
14 6 5.7286 10.9813 -0.2049
15 7 4.9963 12.0689 -0.3128
16 14 7.5923 11.1073 -0.1953
17 1 8.1020 11.0130 -1.5868
18 1 7.9974 12.4091 0.3931
19 1 8.1591 9.9998 0.6156
20 6 5.9199 6.2444 0.0000
21 7 5.2911 5.0874 -0.0070
22 6 4.0723 2.5288 -0.0002
23 6 3.4455 1.2823 0.0002
24 6 4.2519 0.0482 0.0002
25 8 3.7034 -1.0360 0.0010
26 8 5.5974 0.1226 -0.0007
27 1 -0.3633 -1.0276 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 0.2105 2.3147 -0.0014
31 1 1.3167 4.5049 0.0086
32 1 2.1113 6.1079 -0.0022
33 1 3.2410 8.3174 0.0096
34 1 5.4242 12.9362 -0.3877
35 1 6.9996 6.2647 0.0011
36 1 5.1504 2.5931 0.0003
37 1 6.0833 -0.7134 -0.0011
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001241866113.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:21:22
Heat of formation + Delta-G solvation = -87.998257 kcal
Electronic energy + Delta-G solvation = -24490.904635 eV
Core-core repulsion = 20585.814313 eV
Total energy + Delta-G solvation = -3905.090321 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.098 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.81024 -39.86198 -39.38143 -38.00698 -36.87663 -35.98030 -32.71250 -32.17905
-31.40933 -31.21515 -28.63092 -27.41431 -25.51206 -24.89184 -23.13781 -22.63230
-21.75043 -20.54788 -18.46406 -18.20830 -17.99552 -17.55998 -16.94455 -16.29848
-16.10733 -15.51764 -15.38421 -15.36473 -14.68057 -14.39773 -14.31594 -14.19702
-13.69656 -13.21747 -13.16488 -13.00813 -12.70168 -12.59682 -12.40591 -12.24829
-11.95758 -11.58008 -11.52032 -11.26697 -11.21626 -11.00193 -10.48115 -10.43144
-9.87117 -9.25413 -9.22826 -9.15067 -8.98809 -8.63088 -7.32571 -6.65375
-4.29967 0.61001 1.00909 1.83999 2.04461 2.63665 2.99411 3.02524
3.10072 3.14275 3.27423 3.67668 4.05576 4.38861 4.48309 4.55567
4.67904 4.71594 4.87092 4.89911 4.91140 5.07123 5.19569 5.23525
5.28629 5.47861 5.59629 5.68791 5.70750 5.85776 5.99783 6.08700
6.31219 6.38403 6.47090 6.59411 6.76492 6.84751 7.10719 7.16438
7.50303 7.74726 7.93071 8.52369 8.67716 9.24867 10.40798
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.026933 B = 0.002674 C = 0.002437
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1039.371664 B =10467.090203 C =11487.261765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.288 6.288
3 C 0.179 3.821
4 C -0.220 4.220
5 C -0.040 4.040
6 C -0.056 4.056
7 C 0.053 3.947
8 C -0.105 4.105
9 C -0.187 4.187
10 C 0.113 3.887
11 O -0.197 6.197
12 C -0.392 4.392
13 H 0.108 0.892
14 C 0.067 3.933
15 N -0.866 5.866
16 Si 0.907 3.093
17 H -0.270 1.270
18 H -0.280 1.280
19 H -0.256 1.256
20 C 0.038 3.962
21 N -0.434 5.434
22 C -0.002 4.002
23 C -0.167 4.167
24 C 0.529 3.471
25 O -0.505 6.505
26 O -0.512 6.512
27 H 0.101 0.899
28 H 0.057 0.943
29 H 0.057 0.943
30 H 0.138 0.862
31 H 0.136 0.864
32 H 0.124 0.876
33 H 0.144 0.856
34 H 0.284 0.716
35 H 0.154 0.846
36 H 0.156 0.844
37 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.331 -18.408 0.556 19.474
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.199 6.199
3 C 0.131 3.869
4 C -0.239 4.239
5 C -0.059 4.059
6 C -0.057 4.057
7 C -0.081 4.081
8 C -0.124 4.124
9 C -0.213 4.213
10 C 0.056 3.944
11 O -0.099 6.099
12 C -0.468 4.468
13 H 0.126 0.874
14 C -0.139 4.139
15 N -0.502 5.502
16 Si 0.732 3.268
17 H -0.196 1.196
18 H -0.205 1.205
19 H -0.180 1.180
20 C -0.126 4.126
21 N -0.144 5.144
22 C -0.021 4.021
23 C -0.169 4.169
24 C 0.374 3.626
25 O -0.394 6.394
26 O -0.324 6.324
27 H 0.119 0.881
28 H 0.076 0.924
29 H 0.076 0.924
30 H 0.156 0.844
31 H 0.154 0.846
32 H 0.142 0.858
33 H 0.162 0.838
34 H 0.094 0.906
35 H 0.171 0.829
36 H 0.173 0.827
37 H 0.269 0.731
Dipole moment (debyes) X Y Z Total
from point charges -5.919 -18.940 0.547 19.851
hybrid contribution 0.046 0.835 -0.023 0.837
sum -5.874 -18.105 0.524 19.041
Atomic orbital electron populations
1.23159 0.78572 1.04193 1.01457 1.86296 1.20998 1.25703 1.86880
1.19012 0.90453 0.84968 0.92469 1.21038 1.00199 0.91437 1.11185
1.21269 0.93738 0.97443 0.93431 1.18350 0.92111 0.91672 1.03617
1.18954 0.89280 0.91093 1.08805 1.21703 0.99969 0.92023 0.98744
1.21587 0.94395 0.98683 1.06586 1.20295 0.91621 0.87510 0.94940
1.83559 1.36380 1.11797 1.78189 1.20817 0.92423 0.81671 1.51847
0.87422 1.24525 1.00795 0.93535 0.95008 1.69637 1.36800 0.98433
1.45340 0.86145 0.82845 0.78323 0.79495 1.19560 1.20495 1.18022
1.21747 0.99745 0.84912 1.06162 1.67338 1.09600 1.27461 1.09954
1.21502 1.01524 0.88783 0.90261 1.18296 0.89334 0.91943 1.17324
1.20571 0.80507 0.88976 0.72542 1.90908 1.72642 1.29882 1.45972
1.84611 1.20001 1.41623 1.86122 0.88089 0.92425 0.92427 0.84425
0.84640 0.85832 0.83800 0.90593 0.82855 0.82653 0.73119
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.16 9.81 101.05 0.99 1.15 16
2 O -0.29 -3.60 8.55 -40.45 -0.35 -3.94 16
3 C 0.18 2.29 6.70 -38.60 -0.26 2.03 16
4 C -0.22 -2.36 9.01 -39.53 -0.36 -2.72 16
5 C -0.04 -0.47 9.40 -39.20 -0.37 -0.84 16
6 C -0.06 -0.82 5.87 -104.95 -0.62 -1.44 16
7 C 0.05 0.91 6.73 -82.92 -0.56 0.35 16
8 C -0.10 -1.74 9.45 -39.14 -0.37 -2.11 16
9 C -0.19 -3.66 9.25 -39.15 -0.36 -4.02 16
10 C 0.11 2.40 6.67 -38.88 -0.26 2.14 16
11 O -0.20 -4.78 8.59 0.17 0.00 -4.78 16
12 C -0.39 -10.22 9.95 30.88 0.31 -9.91 16
13 H 0.11 2.84 5.48 -52.49 -0.29 2.56 16
14 C 0.07 1.75 5.49 -17.52 -0.10 1.66 16
15 N -0.87 -23.46 13.96 55.48 0.77 -22.68 16
16 Si 0.91 20.19 28.62 -169.99 -4.86 15.32 16
17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16
19 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16
20 C 0.04 0.72 11.14 -17.36 -0.19 0.53 16
21 N -0.43 -7.97 9.40 -9.62 -0.09 -8.06 16
22 C 0.00 -0.03 9.13 -38.83 -0.35 -0.38 16
23 C -0.17 -2.32 5.88 -104.91 -0.62 -2.94 16
24 C 0.53 7.26 8.26 34.47 0.28 7.54 16
25 O -0.50 -8.00 15.93 -26.61 -0.42 -8.42 16
26 O -0.51 -5.51 12.67 -40.64 -0.51 -6.02 16
27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16
29 H 0.06 0.35 7.65 -51.93 -0.40 -0.04 16
30 H 0.14 1.06 6.28 -52.48 -0.33 0.73 16
31 H 0.14 1.31 6.15 -52.49 -0.32 0.99 16
32 H 0.12 1.62 6.16 -52.49 -0.32 1.30 16
33 H 0.14 2.88 5.75 -52.48 -0.30 2.58 16
34 H 0.28 7.07 8.31 -40.82 -0.34 6.74 16
35 H 0.15 2.63 8.06 -52.49 -0.42 2.21 16
36 H 0.16 2.27 7.06 -52.48 -0.37 1.90 16
37 H 0.41 2.38 9.11 45.56 0.42 2.80 16
LS Contribution 327.61 15.07 4.94 4.94
Total: -1.00 -31.55 327.61 -5.65 -37.20
By element:
Atomic # 1 Polarization: 7.72 SS G_CDS: -2.30 Total: 5.42 kcal
Atomic # 6 Polarization: -6.13 SS G_CDS: -2.83 Total: -8.96 kcal
Atomic # 7 Polarization: -31.43 SS G_CDS: 0.68 Total: -30.75 kcal
Atomic # 8 Polarization: -21.88 SS G_CDS: -1.28 Total: -23.17 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -4.86 Total: 15.32 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -31.55 -5.65 -37.20 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241866113.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.803 kcal
(2) G-P(sol) polarization free energy of solvation -31.546 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.350 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds