Wall clock time and date at job start Tue Mar 31 2020 11:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35880 * 116.99925 * 2 1 4 4 C 1.38758 * 120.12031 * 85.11042 * 3 2 1 5 5 F 1.35102 * 119.96921 * 0.02562 * 4 3 2 6 6 C 1.38344 * 120.06658 * 180.27796 * 4 3 2 7 7 C 1.38718 * 120.31079 * 359.76376 * 6 4 3 8 8 F 1.35098 * 119.87809 * 180.02562 * 7 6 4 9 9 C 1.38038 * 120.24393 * 359.97438 * 7 6 4 10 10 C 1.39654 * 119.92675 * 0.02562 * 9 7 6 11 11 C 1.47887 * 120.15709 * 180.02562 * 10 9 7 12 12 C 1.40038 * 119.50692 * 124.32724 * 11 10 9 13 13 C 1.35967 * 121.18945 * 179.97438 * 12 11 10 14 14 C 1.41071 * 120.11470 * 359.97438 * 13 12 11 15 15 C 1.40400 * 120.48454 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99889 * 153.18929 * 15 14 13 17 17 C 1.40284 * 120.00305 * 333.18322 * 15 14 13 18 18 N 1.30651 * 119.99533 * 347.53434 * 17 15 14 19 19 Si 1.86791 * 120.00269 * 167.52699 * 17 15 14 20 20 H 1.48506 * 109.47073 * 60.00287 * 19 17 15 21 21 H 1.48496 * 109.47499 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47164 * 300.00533 * 19 17 15 23 23 C 1.46659 * 119.02908 * 0.02562 * 14 13 12 24 24 C 1.43198 * 120.56101 * 180.02562 * 23 14 13 25 25 N 7.10984 * 78.48621 * 288.50098 * 2 1 3 26 26 C 1.39053 * 118.87798 * 0.02562 * 23 14 13 27 27 H 1.09006 * 109.46839 * 299.25536 * 1 2 3 28 28 H 1.09002 * 109.47015 * 59.24678 * 1 2 3 29 29 H 1.08995 * 109.47255 * 179.24980 * 1 2 3 30 30 H 1.07993 * 119.84351 * 179.74228 * 6 4 3 31 31 H 1.07996 * 120.03822 * 180.02562 * 9 7 6 32 32 H 1.08000 * 119.40458 * 359.70005 * 12 11 10 33 33 H 1.07999 * 119.94836 * 179.97438 * 13 12 11 34 34 H 0.97004 * 119.99747 * 179.97438 * 18 17 15 35 35 H 1.07994 * 120.10428 * 179.97438 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 2.2709 1.8776 1.1959 5 9 1.8766 1.3224 2.3627 6 6 2.8939 3.1128 1.1941 7 6 3.3014 3.6896 0.0002 8 9 3.9094 4.8960 0.0086 9 6 3.0889 3.0351 -1.1964 10 6 2.4609 1.7877 -1.2063 11 6 2.2312 1.0817 -2.4853 12 6 2.7239 -0.2182 -2.6538 13 6 2.5320 -0.8991 -3.8149 14 6 1.8255 -0.2994 -4.8786 15 6 1.6223 -0.9955 -6.0808 16 1 0.7690 -0.7643 -6.7011 17 6 2.5279 -1.9912 -6.4765 18 7 3.6778 -2.1076 -5.8674 19 14 2.0894 -3.1505 -7.8739 20 1 1.8550 -2.3660 -9.1129 21 1 3.2062 -4.1039 -8.0951 22 1 0.8581 -3.9036 -7.5245 23 6 1.3063 1.0619 -4.7101 24 6 0.5840 1.7018 -5.7681 25 7 0.0099 2.2107 -6.6067 26 6 1.5272 1.7206 -3.5056 27 1 -0.3633 0.5023 0.8966 28 1 -0.3633 0.5255 -0.8832 29 1 -0.3633 -1.0275 -0.0135 30 1 3.0634 3.6305 2.1265 31 1 3.4079 3.4871 -2.1240 32 1 3.2699 -0.6868 -1.8484 33 1 2.9211 -1.9007 -3.9233 34 1 4.3038 -2.7964 -6.1408 35 1 1.1540 2.7235 -3.3603 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242809798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:24 Heat of formation + Delta-G solvation = -71.175097 kcal Electronic energy + Delta-G solvation = -24782.035996 eV Core-core repulsion = 20766.587666 eV Total energy + Delta-G solvation = -4015.448330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.02151 -49.97848 -40.91104 -39.25338 -38.05672 -36.96477 -35.91692 -33.09407 -31.72219 -30.85578 -30.52760 -27.90346 -27.19866 -24.44195 -24.02981 -23.28005 -22.28015 -19.69148 -19.35872 -18.81075 -18.48881 -17.92890 -17.33753 -17.10212 -16.81164 -16.43392 -16.03674 -15.96760 -15.74447 -15.48191 -15.46103 -15.11622 -14.56871 -14.52655 -14.32187 -13.75472 -13.63940 -13.52235 -13.47422 -13.24617 -12.98714 -12.80167 -12.68595 -12.59487 -12.23362 -12.20402 -11.70705 -11.54092 -11.21122 -10.93764 -10.10662 -9.60463 -9.48601 -9.17443 -8.84167 -6.56615 -0.21170 -0.11584 0.44941 0.94874 1.37529 1.47526 1.50036 2.02612 2.12168 2.14645 2.39301 2.64667 2.71009 2.90270 3.33451 3.49474 3.65771 3.69039 3.91924 4.04554 4.30523 4.43667 4.48639 4.52636 4.61091 4.72992 4.80904 4.85740 4.91525 4.95235 5.07370 5.12780 5.29745 5.47854 5.57487 5.75236 5.88939 6.05604 6.10040 6.44724 6.47406 6.61427 6.76457 6.96024 8.04823 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.003829 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.373277 B = 7310.317004 C = 7891.437957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.334 6.334 3 C 0.044 3.956 4 C 0.104 3.896 5 F -0.130 7.130 6 C -0.182 4.182 7 C 0.128 3.872 8 F -0.131 7.131 9 C -0.150 4.150 10 C 0.031 3.969 11 C -0.192 4.192 12 C -0.030 4.030 13 C -0.178 4.178 14 C 0.139 3.861 15 C -0.452 4.452 16 H 0.073 0.927 17 C 0.044 3.956 18 N -0.780 5.780 19 Si 0.978 3.022 20 H -0.268 1.268 21 H -0.256 1.256 22 H -0.255 1.255 23 C -0.205 4.205 24 C 0.306 3.694 25 N -0.527 5.527 26 C 0.004 3.996 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.173 0.827 31 H 0.153 0.847 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.302 0.698 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.461 2.479 12.330 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C -0.001 4.001 4 C 0.084 3.916 5 F -0.109 7.109 6 C -0.202 4.202 7 C 0.108 3.892 8 F -0.110 7.110 9 C -0.169 4.169 10 C 0.031 3.969 11 C -0.194 4.194 12 C -0.049 4.049 13 C -0.197 4.197 14 C 0.134 3.866 15 C -0.479 4.479 16 H 0.091 0.909 17 C -0.178 4.178 18 N -0.402 5.402 19 Si 0.798 3.202 20 H -0.193 1.193 21 H -0.179 1.179 22 H -0.179 1.179 23 C -0.211 4.211 24 C -0.003 4.003 25 N -0.207 5.207 26 C -0.017 4.017 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.128 0.872 30 H 0.191 0.809 31 H 0.170 0.830 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.101 2.977 11.087 11.481 hybrid contribution 0.030 -0.456 -0.241 0.517 sum -0.071 2.521 10.846 11.136 Atomic orbital electron populations 1.23156 0.77520 1.04615 1.00790 1.86038 1.21339 1.23606 1.94049 1.18918 1.01641 0.88746 0.90814 1.17594 1.00555 0.92679 0.80776 1.91497 1.88761 1.85048 1.45546 1.21028 1.03975 0.95359 0.99796 1.17099 0.96716 0.81943 0.93435 1.91526 1.80508 1.41642 1.97311 1.21419 1.01856 0.95280 0.98345 1.18702 0.94516 0.92039 0.91690 1.17605 1.12278 0.96338 0.93172 1.20537 0.95597 0.92758 0.96022 1.20902 1.05596 1.00808 0.92437 1.18755 0.87427 0.87906 0.92558 1.19893 1.08350 1.15058 1.04608 0.90861 1.26784 0.93328 0.97488 1.00161 1.69689 1.05616 1.28290 1.36602 0.85272 0.79912 0.77687 0.77282 1.19283 1.17922 1.17925 1.16906 1.16110 0.95406 0.92654 1.25944 0.91094 0.91109 0.92158 1.81044 1.15438 1.12388 1.11851 1.20690 0.93861 0.97298 0.89864 0.92682 0.93622 0.87200 0.80917 0.82962 0.87480 0.86264 0.88581 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.13 113.37 1.26 2.08 16 2 O -0.33 -10.27 9.08 -92.20 -0.84 -11.11 16 3 C 0.04 1.30 5.66 22.83 0.13 1.43 16 4 C 0.10 2.67 7.30 22.42 0.16 2.84 16 5 F -0.13 -3.35 17.11 44.97 0.77 -2.58 16 6 C -0.18 -3.98 9.99 22.41 0.22 -3.76 16 7 C 0.13 3.02 7.29 22.34 0.16 3.19 16 8 F -0.13 -3.06 17.26 44.97 0.78 -2.28 16 9 C -0.15 -3.99 9.57 22.56 0.22 -3.77 16 10 C 0.03 0.96 5.38 -19.95 -0.11 0.85 16 11 C -0.19 -6.91 5.16 -19.99 -0.10 -7.02 16 12 C -0.03 -1.18 8.76 22.18 0.19 -0.98 16 13 C -0.18 -7.86 8.61 22.44 0.19 -7.67 16 14 C 0.14 6.50 5.73 -19.86 -0.11 6.39 16 15 C -0.45 -21.64 8.54 23.29 0.20 -21.44 16 16 H 0.07 3.59 7.39 -2.91 -0.02 3.56 16 17 C 0.04 1.93 5.24 85.37 0.45 2.38 16 18 N -0.78 -34.46 10.80 21.88 0.24 -34.22 16 19 Si 0.98 33.86 29.58 68.60 2.03 35.89 16 20 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 21 H -0.26 -8.10 7.11 99.48 0.71 -7.39 16 22 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 23 C -0.20 -8.93 5.93 -19.64 -0.12 -9.04 16 24 C 0.31 13.87 14.32 88.32 1.26 15.14 16 25 N -0.53 -24.74 18.54 19.01 0.35 -24.38 16 26 C 0.00 0.13 9.28 22.76 0.21 0.34 16 27 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.11 3.97 8.03 -2.91 -0.02 3.94 16 33 H 0.12 5.46 6.13 -2.91 -0.02 5.44 16 34 H 0.30 11.88 8.29 -92.71 -0.77 11.11 16 35 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -51.45 330.03 8.71 -42.73 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.16 Total: 15.02 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 4.23 Total: -19.06 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.59 Total: -58.61 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.84 Total: -11.11 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 1.55 Total: -4.86 kcal Atomic # 14 Polarization: 33.86 SS G_CDS: 2.03 Total: 35.89 kcal Total: -51.45 8.71 -42.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242809798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.443 kcal (2) G-P(sol) polarization free energy of solvation -51.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds