Wall clock time and date at job start Tue Mar 31 2020 11:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35923 * 116.99735 * 2 1 4 4 C 1.38776 * 120.10424 * 91.87257 * 3 2 1 5 5 F 1.35101 * 119.97494 * 0.03897 * 4 3 2 6 6 C 1.38329 * 120.05051 * 180.27426 * 4 3 2 7 7 C 1.38608 * 120.27031 * 359.74345 * 6 4 3 8 8 F 1.35096 * 119.89586 * 179.97438 * 7 6 4 9 9 C 1.38143 * 120.20744 * 359.97438 * 7 6 4 10 10 C 1.39424 * 119.94635 * 0.02562 * 9 7 6 11 11 C 1.48228 * 120.13226 * 179.97438 * 10 9 7 12 12 C 1.39851 * 119.53889 * 124.35459 * 11 10 9 13 13 C 1.37700 * 121.16796 * 179.97438 * 12 11 10 14 14 C 1.39593 * 120.18505 * 359.97438 * 13 12 11 15 15 C 1.43202 * 120.44701 * 180.02562 * 14 13 12 16 16 N 7.25726 * 84.28339 * 260.34787 * 2 1 3 17 17 C 1.46542 * 119.09964 * 0.28217 * 14 13 12 18 18 C 1.40846 * 120.55351 * 179.74926 * 17 14 13 19 19 H 1.07999 * 120.00435 * 28.17955 * 18 17 14 20 20 C 1.40233 * 119.99755 * 208.18651 * 18 17 14 21 21 N 1.30659 * 120.00410 * 13.18046 * 20 18 17 22 22 Si 1.86800 * 120.00096 * 193.17912 * 20 18 17 23 23 H 1.48506 * 109.46722 * 59.99857 * 22 20 18 24 24 H 1.48495 * 109.47400 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47138 * 300.00319 * 22 20 18 26 26 C 1.38648 * 119.53949 * 304.32787 * 11 10 9 27 27 H 1.09001 * 109.46509 * 304.88964 * 1 2 3 28 28 H 1.08997 * 109.46902 * 64.88232 * 1 2 3 29 29 H 1.08995 * 109.47240 * 184.88848 * 1 2 3 30 30 H 1.08007 * 119.86539 * 179.71850 * 6 4 3 31 31 H 1.08000 * 120.02354 * 180.02562 * 9 7 6 32 32 H 1.08000 * 119.42124 * 359.97169 * 12 11 10 33 33 H 1.07995 * 119.90658 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00683 * 174.97269 * 21 20 18 35 35 H 1.08001 * 120.13877 * 0.04572 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3971 1.8135 1.1999 5 9 2.1260 1.1953 2.3702 6 6 3.0199 3.0487 1.1988 7 6 3.3013 3.6882 0.0017 8 9 3.9093 4.8946 0.0095 9 6 2.9620 3.0958 -1.1993 10 6 2.3340 1.8511 -1.2085 11 6 1.9677 1.2120 -2.4947 12 6 2.4346 -0.0743 -2.7832 13 6 2.1145 -0.6998 -3.9674 14 6 1.3103 -0.0533 -4.9076 15 6 0.9735 -0.6988 -6.1407 16 7 0.7062 -1.2107 -7.1189 17 6 0.8202 1.2970 -4.6180 18 6 0.0112 1.9796 -5.5471 19 1 -0.6193 1.4237 -6.2253 20 6 0.0244 3.3812 -5.5917 21 7 0.9590 4.0460 -4.9660 22 14 -1.2943 4.2978 -6.5458 23 1 -2.6296 3.9692 -5.9850 24 1 -1.0576 5.7597 -6.4378 25 1 -1.2439 3.8928 -7.9737 26 6 1.1663 1.8975 -3.3948 27 1 -0.3632 0.5878 0.8430 28 1 -0.3633 0.4362 -0.9305 29 1 -0.3633 -1.0239 0.0876 30 1 3.2876 3.5169 2.1346 31 1 3.1831 3.5966 -2.1303 32 1 3.0574 -0.5862 -2.0645 33 1 2.4859 -1.6936 -4.1690 34 1 1.0116 5.0104 -5.0562 35 1 0.8129 2.8905 -3.1592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242809887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:12 Heat of formation + Delta-G solvation = -61.694487 kcal Electronic energy + Delta-G solvation = -25072.772976 eV Core-core repulsion = 21057.735756 eV Total energy + Delta-G solvation = -4015.037220 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.91784 -48.88700 -39.76073 -37.66056 -36.90441 -35.19415 -34.17514 -31.95185 -30.10742 -29.66575 -28.74654 -26.54982 -25.84004 -23.86573 -22.42045 -21.25190 -21.06734 -18.20121 -17.71998 -17.61955 -17.35756 -16.85304 -16.11895 -15.71952 -15.47904 -15.34343 -14.89251 -14.55917 -14.51437 -14.23864 -14.06394 -13.38501 -13.25335 -12.95093 -12.75426 -12.53400 -12.34886 -11.91331 -11.81792 -11.64472 -11.54460 -11.40143 -11.31834 -11.26663 -10.92834 -10.69427 -10.22050 -9.92178 -9.78882 -9.58431 -8.89844 -8.45492 -7.83064 -7.56657 -7.17113 -4.80927 0.87885 1.00109 1.99267 2.59428 2.88068 2.90864 2.99966 3.25515 3.64898 3.77431 3.84847 3.95603 4.06434 4.39107 4.49651 4.66315 5.02241 5.10279 5.28022 5.35314 5.42088 5.57804 5.58050 5.81944 5.85338 5.91109 5.97029 6.09635 6.26448 6.35906 6.63728 6.68985 6.72468 6.87909 7.05971 7.36771 7.54682 7.58016 7.63171 7.75653 8.09732 8.35175 8.43518 8.74593 9.72252 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012288 B = 0.004960 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.189187 B = 5643.772224 C = 6951.971380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.315 6.315 3 C 0.059 3.941 4 C 0.106 3.894 5 F -0.129 7.129 6 C -0.194 4.194 7 C 0.122 3.878 8 F -0.133 7.133 9 C -0.135 4.135 10 C 0.020 3.980 11 C -0.029 4.029 12 C -0.207 4.207 13 C -0.033 4.033 14 C -0.175 4.175 15 C 0.299 3.701 16 N -0.506 5.506 17 C 0.148 3.852 18 C -0.433 4.433 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.772 5.772 22 Si 0.916 3.084 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.261 1.261 26 C -0.133 4.133 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.291 0.709 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 2.293 11.554 11.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.232 6.232 3 C 0.014 3.986 4 C 0.087 3.913 5 F -0.108 7.108 6 C -0.214 4.214 7 C 0.103 3.897 8 F -0.111 7.111 9 C -0.154 4.154 10 C 0.019 3.981 11 C -0.030 4.030 12 C -0.227 4.227 13 C -0.054 4.054 14 C -0.181 4.181 15 C -0.011 4.011 16 N -0.185 5.185 17 C 0.143 3.857 18 C -0.461 4.461 19 H 0.104 0.896 20 C -0.146 4.146 21 N -0.395 5.395 22 Si 0.739 3.261 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.186 1.186 26 C -0.153 4.153 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.976 1.598 10.178 10.349 hybrid contribution -0.399 1.049 0.243 1.149 sum 0.577 2.648 10.420 10.767 Atomic orbital electron populations 1.23036 0.78559 1.03213 1.01077 1.86070 1.20136 1.22942 1.94011 1.18695 1.01191 0.88583 0.90171 1.17523 1.01396 0.91531 0.80898 1.91496 1.91805 1.82117 1.45357 1.20826 1.05985 0.95646 0.98929 1.17167 0.97078 0.82021 0.93448 1.91515 1.80529 1.41763 1.97343 1.21411 1.00557 0.95538 0.97897 1.19120 0.94142 0.91774 0.93078 1.18251 0.99453 0.94387 0.90874 1.20085 1.08994 0.95131 0.98471 1.20395 0.94957 0.97337 0.92687 1.17069 1.11787 0.98276 0.90979 1.25791 0.91506 0.91310 0.92504 1.81027 1.12939 1.12064 1.12471 1.18299 0.88303 0.88089 0.91012 1.19711 1.19984 0.91122 1.15251 0.89593 1.26058 0.95858 0.98027 0.94630 1.69622 1.27202 1.10556 1.32109 0.86192 0.81118 0.78089 0.80693 1.18261 1.19758 1.18550 1.21353 1.01496 1.00171 0.92249 0.94104 0.92345 0.88741 0.83560 0.82749 0.87903 0.87965 0.89736 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.13 101.05 1.12 1.59 16 2 O -0.32 -5.04 9.07 -19.50 -0.18 -5.22 16 3 C 0.06 0.93 5.66 -38.82 -0.22 0.71 16 4 C 0.11 1.53 7.30 -39.35 -0.29 1.24 16 5 F -0.13 -1.84 17.11 2.25 0.04 -1.80 16 6 C -0.19 -2.51 9.99 -39.41 -0.39 -2.91 16 7 C 0.12 1.71 7.29 -39.48 -0.29 1.43 16 8 F -0.13 -1.85 17.26 2.25 0.04 -1.81 16 9 C -0.14 -2.10 9.56 -39.17 -0.37 -2.48 16 10 C 0.02 0.33 5.38 -104.79 -0.56 -0.23 16 11 C -0.03 -0.54 5.14 -105.04 -0.54 -1.08 16 12 C -0.21 -3.90 8.84 -39.17 -0.35 -4.24 16 13 C -0.03 -0.64 9.74 -39.27 -0.38 -1.02 16 14 C -0.18 -3.82 5.95 -104.12 -0.62 -4.44 16 15 C 0.30 6.77 14.33 -22.47 -0.32 6.45 16 16 N -0.51 -11.87 18.54 41.84 0.78 -11.10 16 17 C 0.15 3.38 5.70 -104.68 -0.60 2.78 16 18 C -0.43 -10.08 8.53 -37.85 -0.32 -10.40 16 19 H 0.09 2.04 7.44 -52.49 -0.39 1.65 16 20 C 0.08 1.66 5.22 -17.30 -0.09 1.57 16 21 N -0.77 -16.74 10.96 55.56 0.61 -16.13 16 22 Si 0.92 16.73 29.58 -169.99 -5.03 11.70 16 23 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 24 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 25 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 26 C -0.13 -2.81 8.18 -38.54 -0.32 -3.13 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 31 H 0.15 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.10 1.82 8.03 -52.49 -0.42 1.40 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.29 5.75 8.30 -40.82 -0.34 5.41 16 35 H 0.13 2.80 6.31 -52.49 -0.33 2.47 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -24.12 330.43 -6.11 -30.23 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.81 Total: 3.30 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -4.54 Total: -14.16 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: 1.38 Total: -27.23 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.18 Total: -5.22 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -24.12 -6.11 -30.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242809887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.463 kcal (2) G-P(sol) polarization free energy of solvation -24.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds