Wall clock time and date at job start Tue Mar 31 2020 11:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35923 * 116.99735 * 2 1 4 4 C 1.38776 * 120.10424 * 91.87257 * 3 2 1 5 5 F 1.35101 * 119.97494 * 0.03897 * 4 3 2 6 6 C 1.38329 * 120.05051 * 180.27426 * 4 3 2 7 7 C 1.38608 * 120.27031 * 359.74345 * 6 4 3 8 8 F 1.35096 * 119.89586 * 179.97438 * 7 6 4 9 9 C 1.38143 * 120.20744 * 359.97438 * 7 6 4 10 10 C 1.39424 * 119.94635 * 0.02562 * 9 7 6 11 11 C 1.48228 * 120.13226 * 179.97438 * 10 9 7 12 12 C 1.39851 * 119.53889 * 124.35459 * 11 10 9 13 13 C 1.37700 * 121.16796 * 179.97438 * 12 11 10 14 14 C 1.39593 * 120.18505 * 359.97438 * 13 12 11 15 15 C 1.43202 * 120.44701 * 180.02562 * 14 13 12 16 16 N 7.25726 * 84.28339 * 260.34787 * 2 1 3 17 17 C 1.46542 * 119.09964 * 0.28217 * 14 13 12 18 18 C 1.40846 * 120.55351 * 179.74926 * 17 14 13 19 19 H 1.07999 * 120.00435 * 28.17955 * 18 17 14 20 20 C 1.40233 * 119.99755 * 208.18651 * 18 17 14 21 21 N 1.30659 * 120.00410 * 13.18046 * 20 18 17 22 22 Si 1.86800 * 120.00096 * 193.17912 * 20 18 17 23 23 H 1.48506 * 109.46722 * 59.99857 * 22 20 18 24 24 H 1.48495 * 109.47400 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47138 * 300.00319 * 22 20 18 26 26 C 1.38648 * 119.53949 * 304.32787 * 11 10 9 27 27 H 1.09001 * 109.46509 * 304.88964 * 1 2 3 28 28 H 1.08997 * 109.46902 * 64.88232 * 1 2 3 29 29 H 1.08995 * 109.47240 * 184.88848 * 1 2 3 30 30 H 1.08007 * 119.86539 * 179.71850 * 6 4 3 31 31 H 1.08000 * 120.02354 * 180.02562 * 9 7 6 32 32 H 1.08000 * 119.42124 * 359.97169 * 12 11 10 33 33 H 1.07995 * 119.90658 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00683 * 174.97269 * 21 20 18 35 35 H 1.08001 * 120.13877 * 0.04572 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3971 1.8135 1.1999 5 9 2.1260 1.1953 2.3702 6 6 3.0199 3.0487 1.1988 7 6 3.3013 3.6882 0.0017 8 9 3.9093 4.8946 0.0095 9 6 2.9620 3.0958 -1.1993 10 6 2.3340 1.8511 -1.2085 11 6 1.9677 1.2120 -2.4947 12 6 2.4346 -0.0743 -2.7832 13 6 2.1145 -0.6998 -3.9674 14 6 1.3103 -0.0533 -4.9076 15 6 0.9735 -0.6988 -6.1407 16 7 0.7062 -1.2107 -7.1189 17 6 0.8202 1.2970 -4.6180 18 6 0.0112 1.9796 -5.5471 19 1 -0.6193 1.4237 -6.2253 20 6 0.0244 3.3812 -5.5917 21 7 0.9590 4.0460 -4.9660 22 14 -1.2943 4.2978 -6.5458 23 1 -2.6296 3.9692 -5.9850 24 1 -1.0576 5.7597 -6.4378 25 1 -1.2439 3.8928 -7.9737 26 6 1.1663 1.8975 -3.3948 27 1 -0.3632 0.5878 0.8430 28 1 -0.3633 0.4362 -0.9305 29 1 -0.3633 -1.0239 0.0876 30 1 3.2876 3.5169 2.1346 31 1 3.1831 3.5966 -2.1303 32 1 3.0574 -0.5862 -2.0645 33 1 2.4859 -1.6936 -4.1690 34 1 1.0116 5.0104 -5.0562 35 1 0.8129 2.8905 -3.1592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242809887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:11 Heat of formation + Delta-G solvation = -70.160596 kcal Electronic energy + Delta-G solvation = -25073.140094 eV Core-core repulsion = 21057.735756 eV Total energy + Delta-G solvation = -4015.404338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.03724 -50.00524 -41.01473 -39.21008 -38.11078 -36.96131 -35.79492 -33.35987 -31.71183 -30.87727 -30.13448 -27.67962 -27.49380 -25.23130 -23.64532 -22.79097 -22.51822 -19.62460 -19.22039 -18.86757 -18.61377 -18.28829 -17.26489 -17.02827 -16.85634 -16.46251 -16.04503 -15.94603 -15.75583 -15.53861 -15.37827 -15.02071 -14.56177 -14.51829 -14.40463 -13.95025 -13.57145 -13.53199 -13.38864 -13.11118 -12.96228 -12.81901 -12.77150 -12.58999 -12.37973 -12.14458 -11.78282 -11.51769 -11.21166 -10.98253 -10.15007 -9.63745 -9.45861 -9.13850 -8.78505 -6.53195 -0.34982 -0.18413 0.42580 1.01671 1.37671 1.46479 1.51019 2.04019 2.05224 2.13987 2.35191 2.64472 2.68920 2.84736 3.28424 3.45990 3.60604 3.66346 3.87584 3.96004 4.36974 4.40868 4.41719 4.52429 4.63337 4.69901 4.76973 4.84624 4.92141 4.97819 5.04177 5.16499 5.24738 5.45018 5.53183 5.75969 5.92753 6.02239 6.12935 6.38268 6.42572 6.67043 6.76371 6.96758 8.12061 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012288 B = 0.004960 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.189187 B = 5643.772224 C = 6951.971380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.330 6.330 3 C 0.058 3.942 4 C 0.106 3.894 5 F -0.126 7.126 6 C -0.170 4.170 7 C 0.126 3.874 8 F -0.130 7.130 9 C -0.136 4.136 10 C -0.003 4.003 11 C -0.014 4.014 12 C -0.202 4.202 13 C -0.028 4.028 14 C -0.196 4.196 15 C 0.305 3.695 16 N -0.529 5.529 17 C 0.131 3.869 18 C -0.466 4.466 19 H 0.070 0.930 20 C 0.048 3.952 21 N -0.789 5.789 22 Si 0.972 3.028 23 H -0.257 1.257 24 H -0.257 1.257 25 H -0.271 1.271 26 C -0.147 4.147 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.116 0.884 30 H 0.179 0.821 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.300 0.700 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 2.875 13.694 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.246 6.246 3 C 0.012 3.988 4 C 0.086 3.914 5 F -0.104 7.104 6 C -0.189 4.189 7 C 0.106 3.894 8 F -0.108 7.108 9 C -0.155 4.155 10 C -0.004 4.004 11 C -0.015 4.015 12 C -0.221 4.221 13 C -0.049 4.049 14 C -0.202 4.202 15 C -0.004 4.004 16 N -0.208 5.208 17 C 0.125 3.875 18 C -0.494 4.494 19 H 0.088 0.912 20 C -0.173 4.173 21 N -0.412 5.412 22 Si 0.793 3.207 23 H -0.181 1.181 24 H -0.181 1.181 25 H -0.196 1.196 26 C -0.166 4.166 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.197 0.803 31 H 0.163 0.837 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.482 2.176 12.332 12.610 hybrid contribution -0.473 0.845 -0.265 1.004 sum 1.008 3.021 12.067 12.480 Atomic orbital electron populations 1.23186 0.77324 1.04835 1.00788 1.86035 1.21359 1.23157 1.94075 1.18753 1.01114 0.88516 0.90377 1.17468 1.01546 0.91874 0.80467 1.91511 1.91798 1.82153 1.44964 1.21071 1.03554 0.94571 0.99718 1.17071 0.97009 0.82083 0.93229 1.91529 1.80440 1.41565 1.97309 1.21327 1.00662 0.95125 0.98424 1.18943 0.96304 0.92690 0.92433 1.18413 0.97582 0.94202 0.91352 1.20338 1.08356 0.95037 0.98363 1.20649 0.93854 0.98206 0.92152 1.17258 1.13160 0.98441 0.91384 1.26007 0.90982 0.90866 0.92535 1.81004 1.13874 1.12930 1.13023 1.18563 0.88597 0.88697 0.91600 1.19776 1.21264 0.92257 1.16125 0.91230 1.26624 0.97265 0.97989 0.95373 1.69632 1.27809 1.11196 1.32562 0.85365 0.78855 0.77724 0.78731 1.18102 1.18061 1.19555 1.21226 1.02789 1.00150 0.92417 0.92643 0.94076 0.86557 0.80326 0.83688 0.86176 0.85601 0.88880 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.13 113.37 1.26 2.07 16 2 O -0.33 -9.94 9.07 -92.69 -0.84 -10.78 16 3 C 0.06 1.72 5.66 22.76 0.13 1.85 16 4 C 0.11 2.75 7.30 22.42 0.16 2.92 16 5 F -0.13 -3.19 17.11 44.97 0.77 -2.42 16 6 C -0.17 -3.80 9.99 22.38 0.22 -3.57 16 7 C 0.13 3.22 7.29 22.34 0.16 3.38 16 8 F -0.13 -3.29 17.26 44.97 0.78 -2.51 16 9 C -0.14 -4.10 9.56 22.53 0.22 -3.89 16 10 C 0.00 -0.09 5.38 -19.97 -0.11 -0.20 16 11 C -0.01 -0.54 5.14 -20.13 -0.10 -0.65 16 12 C -0.20 -7.37 8.84 22.53 0.20 -7.17 16 13 C -0.03 -1.07 9.74 22.47 0.22 -0.85 16 14 C -0.20 -8.71 5.95 -19.54 -0.12 -8.82 16 15 C 0.30 14.12 14.33 88.33 1.27 15.38 16 16 N -0.53 -25.27 18.54 19.00 0.35 -24.92 16 17 C 0.13 6.12 5.70 -19.90 -0.11 6.01 16 18 C -0.47 -22.54 8.53 23.39 0.20 -22.34 16 19 H 0.07 3.48 7.44 -2.91 -0.02 3.45 16 20 C 0.05 2.11 5.22 85.35 0.45 2.56 16 21 N -0.79 -34.68 10.96 21.87 0.24 -34.44 16 22 Si 0.97 34.57 29.58 68.60 2.03 36.60 16 23 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 24 H -0.26 -8.38 7.11 99.48 0.71 -7.68 16 25 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 26 C -0.15 -6.31 8.18 22.94 0.19 -6.12 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.15 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.12 4.00 8.03 -2.91 -0.02 3.97 16 33 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.30 11.82 8.30 -92.71 -0.77 11.05 16 35 H 0.12 5.34 6.31 -2.91 -0.02 5.33 16 Total: -1.00 -51.82 330.43 8.72 -43.10 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.16 Total: 14.81 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 4.23 Total: -19.44 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.59 Total: -59.35 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.84 Total: -10.78 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 1.55 Total: -4.93 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Total: -51.82 8.72 -43.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242809887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.058 kcal (2) G-P(sol) polarization free energy of solvation -51.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds