Wall clock time and date at job start Tue Mar 31 2020 11:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35549 * 117.00339 * 2 1 4 4 C 1.40092 * 120.21934 * 269.97811 * 3 2 1 5 5 C 1.47399 * 120.13802 * 0.04231 * 4 3 2 6 6 O 1.21510 * 120.00060 * 359.97438 * 5 4 3 7 7 O 1.34755 * 120.00101 * 180.02562 * 5 4 3 8 8 C 1.39771 * 119.72291 * 180.02562 * 4 3 2 9 9 C 1.37928 * 120.16575 * 0.02562 * 8 4 3 10 10 C 1.38240 * 120.45626 * 359.71720 * 9 8 4 11 11 C 1.39305 * 120.26763 * 0.56140 * 10 9 8 12 12 C 1.48200 * 120.08639 * 179.71579 * 11 10 9 13 13 C 1.39475 * 119.65504 * 359.74665 * 12 11 10 14 14 C 1.38195 * 119.14408 * 179.74210 * 13 12 11 15 15 C 1.39441 * 118.45899 * 0.49965 * 14 13 12 16 16 O 1.35723 * 120.38112 * 179.75527 * 15 14 13 17 17 C 1.34812 * 117.00003 * 5.18073 * 16 15 14 18 18 H 1.08000 * 119.99998 * 354.93118 * 17 16 15 19 19 C 1.38647 * 120.00097 * 174.92436 * 17 16 15 20 20 N 1.31566 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00023 * 179.72780 * 19 17 16 22 22 H 1.48504 * 109.47255 * 180.27324 * 21 19 17 23 23 H 1.48497 * 109.47389 * 300.27646 * 21 19 17 24 24 H 1.48501 * 109.47198 * 60.27827 * 21 19 17 25 25 C 1.38935 * 119.23864 * 359.48043 * 15 14 13 26 26 N 1.31679 * 120.79197 * 0.27320 * 25 15 14 27 27 H 1.09008 * 109.47406 * 300.00319 * 1 2 3 28 28 H 1.09005 * 109.47164 * 59.99628 * 1 2 3 29 29 H 1.08998 * 109.47291 * 180.02562 * 1 2 3 30 30 H 0.96704 * 116.99798 * 179.97438 * 7 5 4 31 31 H 1.08000 * 119.91543 * 179.97438 * 8 4 3 32 32 H 1.08005 * 119.77243 * 179.97438 * 9 8 4 33 33 H 1.07993 * 119.86572 * 180.30139 * 10 9 8 34 34 H 1.08004 * 120.43108 * 0.02562 * 13 12 11 35 35 H 1.07996 * 120.77249 * 180.28087 * 14 13 12 36 36 H 0.97000 * 120.00001 * 359.73284 * 20 19 17 37 37 H 1.07997 * 119.60436 * 180.29744 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 2.3649 1.8357 -1.2105 5 6 2.0335 1.1864 -2.4916 6 8 1.4816 0.1039 -2.4992 7 8 2.3436 1.7927 -3.6544 8 6 3.0000 3.0808 -1.1984 9 6 3.3105 3.6888 0.0000 10 6 2.9927 3.0779 1.1987 11 6 2.3649 1.8344 1.2083 12 6 2.0317 1.1803 2.4957 13 6 2.3548 1.8138 3.6956 14 6 2.0344 1.1968 4.8900 15 6 1.4063 -0.0474 4.8476 16 8 1.0787 -0.6904 5.9970 17 6 1.2894 -0.0265 7.1512 18 1 1.7768 0.9372 7.1386 19 6 0.8804 -0.5807 8.3545 20 7 0.2862 -1.7544 8.3698 21 14 1.1793 0.3358 9.9544 22 1 0.6582 -0.4672 11.0897 23 1 2.6367 0.5579 10.1329 24 1 0.4805 1.6455 9.9126 25 6 1.1145 -0.6187 3.6152 26 7 1.4287 -0.0019 2.4950 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.1068 1.3279 -4.4687 31 1 3.2489 3.5675 -2.1298 32 1 3.8017 4.6507 0.0020 33 1 3.2359 3.5648 2.1315 34 1 2.8448 2.7763 3.6914 35 1 2.2682 1.6658 5.8343 36 1 0.1307 -2.2302 7.5389 37 1 0.6238 -1.5799 3.5755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242919795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:24 Heat of formation + Delta-G solvation = -85.061552 kcal Electronic energy + Delta-G solvation = -25254.560355 eV Core-core repulsion = 21349.597379 eV Total energy + Delta-G solvation = -3904.962976 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75624 -39.84123 -38.95043 -37.34678 -37.08058 -35.99619 -32.82687 -32.22187 -31.34574 -30.58947 -28.44009 -26.63600 -25.33536 -24.77671 -23.18139 -22.83622 -21.26118 -20.87066 -18.75693 -18.13014 -17.90345 -16.97036 -16.93186 -16.27239 -15.81911 -15.41299 -15.27498 -15.12225 -14.81293 -14.27011 -14.08189 -13.98988 -13.71469 -13.61742 -13.27772 -12.87906 -12.66464 -12.34247 -12.14866 -11.96123 -11.67051 -11.53055 -11.15968 -11.04974 -10.76020 -10.58240 -10.43210 -10.00086 -9.60341 -9.45574 -9.15601 -8.95005 -8.78130 -8.73325 -7.35473 -7.03618 -4.29632 0.53035 0.91430 1.89484 2.09144 2.60379 2.89260 3.11462 3.15808 3.32561 3.52162 3.90914 4.05898 4.47516 4.55337 4.70388 4.84143 4.85975 4.96863 5.11980 5.18586 5.28189 5.47706 5.58255 5.63996 5.65607 5.74985 5.77787 5.91000 6.02729 6.05968 6.23859 6.30796 6.35095 6.42656 6.55617 6.75771 6.85204 7.20952 7.28961 7.78668 7.83181 8.10899 8.58230 8.66086 9.26860 10.39727 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.029349 B = 0.002986 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.817646 B = 9374.674758 C =10235.918311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 O -0.297 6.297 3 C 0.181 3.819 4 C -0.159 4.159 5 C 0.524 3.476 6 O -0.494 6.494 7 O -0.518 6.518 8 C -0.064 4.064 9 C -0.139 4.139 10 C -0.074 4.074 11 C -0.036 4.036 12 C 0.034 3.966 13 C -0.097 4.097 14 C -0.200 4.200 15 C 0.112 3.888 16 O -0.181 6.181 17 C -0.471 4.471 18 H 0.088 0.912 19 C 0.014 3.986 20 N -0.865 5.865 21 Si 1.096 2.904 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 C 0.031 3.969 26 N -0.406 5.406 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.411 0.589 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.139 0.861 36 H 0.286 0.714 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 11.222 -16.198 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 O -0.212 6.212 3 C 0.135 3.865 4 C -0.160 4.160 5 C 0.367 3.633 6 O -0.381 6.381 7 O -0.330 6.330 8 C -0.082 4.082 9 C -0.157 4.157 10 C -0.093 4.093 11 C -0.038 4.038 12 C -0.099 4.099 13 C -0.117 4.117 14 C -0.226 4.226 15 C 0.054 3.946 16 O -0.082 6.082 17 C -0.546 4.546 18 H 0.105 0.895 19 C -0.193 4.193 20 N -0.494 5.494 21 Si 0.919 3.081 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.134 4.134 26 N -0.115 5.115 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.269 0.731 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.096 0.904 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.426 10.181 -14.843 18.323 hybrid contribution 0.315 0.480 -1.379 1.494 sum 3.741 10.661 -16.223 19.769 Atomic orbital electron populations 1.22620 0.78041 1.02970 0.98830 1.85916 1.19904 1.21858 1.93487 1.18732 0.93171 0.85257 0.89373 1.19406 1.09517 0.97290 0.89826 1.20704 0.75558 0.83016 0.83987 1.90942 1.38756 1.20697 1.87749 1.84561 1.77916 1.53621 1.16932 1.21296 0.95233 0.92659 0.99035 1.20983 1.02183 1.00876 0.91643 1.21388 0.95556 0.93483 0.98905 1.18874 0.99802 0.93766 0.91318 1.18839 1.06745 0.93846 0.90519 1.21679 0.98474 0.99500 0.92004 1.21440 1.05307 0.97039 0.98823 1.20454 0.94061 0.91684 0.88386 1.83649 1.71467 1.40965 1.12090 1.22339 1.43701 1.05730 0.82845 0.89488 1.26698 0.94265 0.97272 1.01097 1.70581 1.34403 1.11937 1.32513 0.83100 0.77000 0.74823 0.73170 1.19504 1.20461 1.20478 1.21808 1.05212 1.01413 0.84968 1.67595 1.08106 1.07099 1.28735 0.93717 0.95123 0.89200 0.73101 0.84461 0.84912 0.84725 0.85976 0.84305 0.90389 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 9.70 101.05 0.98 2.07 16 2 O -0.30 -5.38 7.12 -40.25 -0.29 -5.67 16 3 C 0.18 2.97 5.74 -38.29 -0.22 2.76 16 4 C -0.16 -2.20 5.88 -104.90 -0.62 -2.81 16 5 C 0.52 6.97 8.26 34.46 0.28 7.26 16 6 O -0.49 -7.99 14.80 -26.60 -0.39 -8.38 16 7 O -0.52 -4.75 12.67 -40.64 -0.51 -5.27 16 8 C -0.06 -0.69 9.61 -39.12 -0.38 -1.06 16 9 C -0.14 -1.39 10.01 -39.69 -0.40 -1.79 16 10 C -0.07 -0.90 9.41 -39.18 -0.37 -1.27 16 11 C -0.04 -0.58 5.88 -104.81 -0.62 -1.19 16 12 C 0.03 0.64 6.73 -82.93 -0.56 0.08 16 13 C -0.10 -1.70 9.45 -39.14 -0.37 -2.07 16 14 C -0.20 -4.09 9.25 -39.15 -0.36 -4.46 16 15 C 0.11 2.56 6.67 -38.88 -0.26 2.30 16 16 O -0.18 -4.77 9.17 0.18 0.00 -4.76 16 17 C -0.47 -12.35 9.49 30.88 0.29 -12.05 16 18 H 0.09 2.12 5.25 -52.49 -0.28 1.84 16 19 C 0.01 0.38 5.49 -17.51 -0.10 0.28 16 20 N -0.86 -24.39 13.70 55.48 0.76 -23.63 16 21 Si 1.10 22.06 29.92 -169.99 -5.09 16.98 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 25 C 0.03 0.65 11.14 -17.36 -0.19 0.45 16 26 N -0.41 -8.17 6.77 -9.62 -0.07 -8.24 16 27 H 0.04 0.72 7.39 -51.92 -0.38 0.34 16 28 H 0.03 0.45 7.50 -51.93 -0.39 0.06 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.41 1.91 9.11 45.56 0.42 2.32 16 31 H 0.14 1.15 7.60 -52.49 -0.40 0.75 16 32 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 33 H 0.14 1.36 6.15 -52.49 -0.32 1.03 16 34 H 0.12 1.67 6.17 -52.48 -0.32 1.35 16 35 H 0.14 2.76 5.75 -52.49 -0.30 2.46 16 36 H 0.29 8.22 7.97 -40.82 -0.33 7.89 16 37 H 0.15 2.96 8.06 -52.49 -0.42 2.53 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -32.51 325.32 -5.93 -38.43 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.37 Total: 7.15 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.88 Total: -11.52 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.69 Total: -31.86 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.19 Total: -24.08 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.09 Total: 16.98 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.51 -5.93 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242919795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.628 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds