Wall clock time and date at job start Tue Mar 31 2020 11:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35549 * 117.00339 * 2 1 4 4 C 1.40092 * 120.21934 * 269.97811 * 3 2 1 5 5 C 1.47399 * 120.13802 * 0.04231 * 4 3 2 6 6 O 1.21510 * 120.00060 * 359.97438 * 5 4 3 7 7 O 1.34755 * 120.00101 * 180.02562 * 5 4 3 8 8 C 1.39771 * 119.72291 * 180.02562 * 4 3 2 9 9 C 1.37928 * 120.16575 * 0.02562 * 8 4 3 10 10 C 1.38240 * 120.45626 * 359.71720 * 9 8 4 11 11 C 1.39305 * 120.26763 * 0.56140 * 10 9 8 12 12 C 1.48200 * 120.08639 * 179.71579 * 11 10 9 13 13 C 1.39475 * 119.65504 * 359.74665 * 12 11 10 14 14 C 1.38195 * 119.14408 * 179.74210 * 13 12 11 15 15 C 1.39441 * 118.45899 * 0.49965 * 14 13 12 16 16 O 1.35723 * 120.38112 * 179.75527 * 15 14 13 17 17 C 1.34812 * 117.00003 * 5.18073 * 16 15 14 18 18 H 1.08000 * 119.99998 * 354.93118 * 17 16 15 19 19 C 1.38647 * 120.00097 * 174.92436 * 17 16 15 20 20 N 1.31566 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00023 * 179.72780 * 19 17 16 22 22 H 1.48504 * 109.47255 * 180.27324 * 21 19 17 23 23 H 1.48497 * 109.47389 * 300.27646 * 21 19 17 24 24 H 1.48501 * 109.47198 * 60.27827 * 21 19 17 25 25 C 1.38935 * 119.23864 * 359.48043 * 15 14 13 26 26 N 1.31679 * 120.79197 * 0.27320 * 25 15 14 27 27 H 1.09008 * 109.47406 * 300.00319 * 1 2 3 28 28 H 1.09005 * 109.47164 * 59.99628 * 1 2 3 29 29 H 1.08998 * 109.47291 * 180.02562 * 1 2 3 30 30 H 0.96704 * 116.99798 * 179.97438 * 7 5 4 31 31 H 1.08000 * 119.91543 * 179.97438 * 8 4 3 32 32 H 1.08005 * 119.77243 * 179.97438 * 9 8 4 33 33 H 1.07993 * 119.86572 * 180.30139 * 10 9 8 34 34 H 1.08004 * 120.43108 * 0.02562 * 13 12 11 35 35 H 1.07996 * 120.77249 * 180.28087 * 14 13 12 36 36 H 0.97000 * 120.00001 * 359.73284 * 20 19 17 37 37 H 1.07997 * 119.60436 * 180.29744 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 2.3649 1.8357 -1.2105 5 6 2.0335 1.1864 -2.4916 6 8 1.4816 0.1039 -2.4992 7 8 2.3436 1.7927 -3.6544 8 6 3.0000 3.0808 -1.1984 9 6 3.3105 3.6888 0.0000 10 6 2.9927 3.0779 1.1987 11 6 2.3649 1.8344 1.2083 12 6 2.0317 1.1803 2.4957 13 6 2.3548 1.8138 3.6956 14 6 2.0344 1.1968 4.8900 15 6 1.4063 -0.0474 4.8476 16 8 1.0787 -0.6904 5.9970 17 6 1.2894 -0.0265 7.1512 18 1 1.7768 0.9372 7.1386 19 6 0.8804 -0.5807 8.3545 20 7 0.2862 -1.7544 8.3698 21 14 1.1793 0.3358 9.9544 22 1 0.6582 -0.4672 11.0897 23 1 2.6367 0.5579 10.1329 24 1 0.4805 1.6455 9.9126 25 6 1.1145 -0.6187 3.6152 26 7 1.4287 -0.0019 2.4950 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.1068 1.3279 -4.4687 31 1 3.2489 3.5675 -2.1298 32 1 3.8017 4.6507 0.0020 33 1 3.2359 3.5648 2.1315 34 1 2.8448 2.7763 3.6914 35 1 2.2682 1.6658 5.8343 36 1 0.1307 -2.2302 7.5389 37 1 0.6238 -1.5799 3.5755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242919795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:24 Heat of formation + Delta-G solvation = -106.630703 kcal Electronic energy + Delta-G solvation = -25255.495664 eV Core-core repulsion = 21349.597379 eV Total energy + Delta-G solvation = -3905.898285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.91036 -41.27430 -40.17384 -38.95308 -38.22083 -36.93645 -34.56184 -33.61485 -32.89646 -31.65022 -29.87804 -27.89889 -27.11318 -25.85628 -24.61983 -24.28870 -22.55146 -21.95658 -20.48041 -19.36945 -18.94649 -18.50789 -18.06385 -17.69440 -16.89086 -16.79155 -16.62663 -16.24318 -16.02274 -15.88158 -15.63912 -15.53191 -15.00791 -14.79264 -14.47622 -14.32523 -14.26266 -13.50789 -13.35244 -13.07948 -12.81149 -12.59515 -12.55896 -12.48839 -12.27875 -11.95196 -11.80482 -11.62529 -10.98080 -10.87550 -10.69568 -10.38504 -10.31842 -9.87236 -9.01670 -8.90191 -6.31066 -0.49031 -0.27342 0.30584 0.73694 1.50112 1.53332 1.62976 1.79104 2.01703 2.30872 2.46193 2.80010 2.95686 3.04464 3.16487 3.35399 3.61016 3.89123 3.94849 4.06366 4.13350 4.16110 4.32555 4.38289 4.39262 4.51492 4.54962 4.68607 4.74678 4.87946 4.94762 5.14917 5.18250 5.30452 5.35498 5.46964 5.57405 5.63164 5.72910 6.12021 6.58782 6.75091 6.98946 7.03438 7.47019 8.42938 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.029349 B = 0.002986 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.817646 B = 9374.674758 C =10235.918311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 O -0.324 6.324 3 C 0.155 3.845 4 C -0.177 4.177 5 C 0.527 3.473 6 O -0.533 6.533 7 O -0.501 6.501 8 C -0.039 4.039 9 C -0.124 4.124 10 C -0.057 4.057 11 C -0.077 4.077 12 C 0.057 3.943 13 C -0.092 4.092 14 C -0.195 4.195 15 C 0.082 3.918 16 O -0.232 6.232 17 C -0.490 4.490 18 H 0.100 0.900 19 C -0.039 4.039 20 N -0.910 5.910 21 Si 1.145 2.855 22 H -0.277 1.277 23 H -0.257 1.257 24 H -0.257 1.257 25 C 0.020 3.980 26 N -0.421 5.421 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.432 0.568 31 H 0.171 0.829 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.145 0.855 36 H 0.263 0.737 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.410 16.157 -18.747 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 O -0.239 6.239 3 C 0.109 3.891 4 C -0.179 4.179 5 C 0.372 3.628 6 O -0.424 6.424 7 O -0.315 6.315 8 C -0.057 4.057 9 C -0.141 4.141 10 C -0.076 4.076 11 C -0.079 4.079 12 C -0.079 4.079 13 C -0.111 4.111 14 C -0.221 4.221 15 C 0.028 3.972 16 O -0.137 6.137 17 C -0.565 4.565 18 H 0.118 0.882 19 C -0.236 4.236 20 N -0.543 5.543 21 Si 0.960 3.040 22 H -0.201 1.201 23 H -0.182 1.182 24 H -0.181 1.181 25 C -0.141 4.141 26 N -0.130 5.130 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.294 0.706 31 H 0.188 0.812 32 H 0.199 0.801 33 H 0.181 0.819 34 H 0.191 0.809 35 H 0.163 0.837 36 H 0.072 0.928 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.907 15.139 -17.484 23.870 hybrid contribution -0.272 -0.729 -1.295 1.511 sum 5.635 14.409 -18.779 24.331 Atomic orbital electron populations 1.22554 0.77716 1.03041 0.98486 1.85867 1.20571 1.23750 1.93751 1.19089 0.93965 0.85230 0.90842 1.19571 1.10513 0.98619 0.89190 1.20712 0.74746 0.82410 0.84910 1.90936 1.40646 1.22443 1.88390 1.84490 1.77069 1.53094 1.16867 1.21792 0.92064 0.90764 1.01081 1.21520 1.00472 1.02083 0.90063 1.21788 0.93101 0.91388 1.01304 1.18948 1.03388 0.95919 0.89595 1.19628 1.03009 0.92630 0.92668 1.22117 0.97745 1.01105 0.90140 1.21702 1.04035 0.95981 1.00416 1.20872 0.95038 0.93173 0.88088 1.83658 1.74767 1.42404 1.12834 1.22692 1.44132 1.06377 0.83332 0.88248 1.28454 0.93289 0.97239 1.04668 1.70712 1.38762 1.13930 1.30932 0.82595 0.78269 0.74343 0.68826 1.20149 1.18163 1.18128 1.21893 1.05417 1.01733 0.85077 1.67724 1.08997 1.08345 1.27915 0.94935 0.94309 0.89087 0.70619 0.81156 0.80098 0.81934 0.80852 0.83722 0.92832 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.46 9.70 113.37 1.10 3.56 16 2 O -0.32 -11.86 7.12 -67.60 -0.48 -12.34 16 3 C 0.15 4.83 5.74 23.11 0.13 4.96 16 4 C -0.18 -4.35 5.88 -20.04 -0.12 -4.46 16 5 C 0.53 12.81 8.26 70.23 0.58 13.39 16 6 O -0.53 -16.92 14.80 26.81 0.40 -16.52 16 7 O -0.50 -7.30 12.67 -56.65 -0.72 -8.01 16 8 C -0.04 -0.61 9.61 22.57 0.22 -0.39 16 9 C -0.12 -1.59 10.01 22.20 0.22 -1.37 16 10 C -0.06 -1.06 9.41 22.53 0.21 -0.85 16 11 C -0.08 -2.23 5.88 -19.98 -0.12 -2.35 16 12 C 0.06 2.01 6.73 41.96 0.28 2.30 16 13 C -0.09 -2.97 9.45 22.56 0.21 -2.76 16 14 C -0.20 -7.88 9.25 22.55 0.21 -7.67 16 15 C 0.08 3.93 6.67 22.73 0.15 4.08 16 16 O -0.23 -13.11 9.17 -22.26 -0.20 -13.31 16 17 C -0.49 -26.95 9.49 67.92 0.64 -26.31 16 18 H 0.10 4.94 5.25 -2.91 -0.02 4.92 16 19 C -0.04 -2.12 5.49 84.83 0.47 -1.66 16 20 N -0.91 -55.04 13.70 21.61 0.30 -54.75 16 21 Si 1.14 45.23 29.92 68.60 2.05 47.28 16 22 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 24 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 25 C 0.02 0.90 11.14 84.88 0.95 1.84 16 26 N -0.42 -17.26 6.77 -184.36 -1.25 -18.50 16 27 H 0.03 1.09 7.39 -2.38 -0.02 1.07 16 28 H 0.04 1.15 7.50 -2.38 -0.02 1.13 16 29 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.43 2.52 9.11 -74.05 -0.67 1.85 16 31 H 0.17 1.61 7.60 -2.91 -0.02 1.59 16 32 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.16 2.07 6.15 -2.91 -0.02 2.05 16 34 H 0.17 3.75 6.17 -2.91 -0.02 3.74 16 35 H 0.15 5.63 5.75 -2.91 -0.02 5.61 16 36 H 0.26 16.60 7.97 -92.71 -0.74 15.86 16 37 H 0.15 6.42 8.06 -2.91 -0.02 6.40 16 Total: -1.00 -78.98 325.32 5.75 -73.23 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.52 Total: 20.62 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 5.14 Total: -17.69 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -0.95 Total: -73.25 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.01 Total: -50.19 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.05 Total: 47.28 kcal Total: -78.98 5.75 -73.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242919795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.400 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds