Wall clock time and date at job start Tue Mar 31 2020 11:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35957 * 117.00128 * 2 1 4 4 C 1.38964 * 119.94391 * 90.00378 * 3 2 1 5 5 F 1.35098 * 119.97082 * 359.97438 * 4 3 2 6 6 C 1.38099 * 120.05550 * 180.02562 * 4 3 2 7 7 C 1.39427 * 119.94670 * 0.02562 * 6 4 3 8 8 C 1.48262 * 120.05870 * 180.02562 * 7 6 4 9 9 C 1.39847 * 119.53541 * 359.97438 * 8 7 6 10 10 C 1.37699 * 121.16583 * 179.97438 * 9 8 7 11 11 C 1.39595 * 120.18916 * 0.25842 * 10 9 8 12 12 C 1.43200 * 120.45179 * 179.72005 * 11 10 9 13 13 N 9.62560 * 147.53395 * 181.45464 * 3 1 2 14 14 C 1.46541 * 119.09076 * 359.50608 * 11 10 9 15 15 C 1.40847 * 120.55456 * 180.24740 * 14 11 10 16 16 H 1.08009 * 119.99627 * 24.74204 * 15 14 11 17 17 C 1.40223 * 120.00317 * 204.74927 * 15 14 11 18 18 N 1.30666 * 120.00254 * 17.43756 * 17 15 14 19 19 Si 1.86799 * 120.00047 * 197.43670 * 17 15 14 20 20 H 1.48504 * 109.47186 * 90.00131 * 19 17 15 21 21 H 1.48503 * 109.47505 * 209.99687 * 19 17 15 22 22 H 1.48498 * 109.47293 * 330.00014 * 19 17 15 23 23 C 1.38635 * 119.54135 * 179.97438 * 8 7 6 24 24 C 1.39421 * 119.88797 * 0.26970 * 7 6 4 25 25 C 1.38102 * 119.94384 * 359.47611 * 24 7 6 26 26 F 1.35107 * 119.97401 * 180.25079 * 25 24 7 27 27 H 1.09010 * 109.47159 * 299.99409 * 1 2 3 28 28 H 1.08995 * 109.47618 * 59.99752 * 1 2 3 29 29 H 1.08997 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.02926 * 180.02562 * 6 4 3 31 31 H 1.08000 * 119.41922 * 0.02562 * 9 8 7 32 32 H 1.08007 * 119.90336 * 179.97438 * 10 9 8 33 33 H 0.96993 * 120.00054 * 184.65059 * 18 17 15 34 34 H 1.07997 * 120.13184 * 0.04768 * 23 8 7 35 35 H 1.07997 * 120.02854 * 179.70422 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.3612 1.8294 1.2041 5 9 2.0533 1.2262 2.3731 6 6 2.9877 3.0601 1.2068 7 6 3.3037 3.6828 0.0001 8 6 3.9768 5.0038 0.0001 9 6 4.2904 5.6178 1.2168 10 6 4.9158 6.8440 1.2560 11 6 5.2450 7.5022 0.0698 12 6 5.8901 8.7803 0.1040 13 7 6.4032 9.7934 0.1312 14 6 4.9258 6.8653 -1.2108 15 6 5.2489 7.4996 -2.4261 16 1 6.0521 8.2208 -2.4620 17 6 4.5277 7.1949 -3.5894 18 7 3.3653 6.6044 -3.5018 19 14 5.2285 7.6333 -5.2646 20 1 6.0440 6.5005 -5.7718 21 1 4.1167 7.9053 -6.2107 22 1 6.0821 8.8423 -5.1431 23 6 4.2866 5.6131 -1.2061 24 6 2.9811 3.0636 -1.2067 25 6 2.3593 1.8304 -1.2041 26 9 2.0510 1.2275 -2.3732 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.2327 3.5398 2.1429 31 1 4.0383 5.1211 2.1421 32 1 5.1481 7.2998 2.2072 33 1 2.8974 6.3329 -4.3068 34 1 4.0379 5.1278 -2.1383 35 1 3.2205 3.5461 -2.1427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243225725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:38 Heat of formation + Delta-G solvation = -61.366736 kcal Electronic energy + Delta-G solvation = -24585.223765 eV Core-core repulsion = 20570.200757 eV Total energy + Delta-G solvation = -4015.023008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.92579 -48.86030 -39.59326 -38.34417 -36.98924 -35.18008 -34.25464 -31.63236 -30.66153 -29.86424 -28.66053 -26.74854 -26.00256 -23.52061 -23.08047 -21.13334 -21.02227 -18.40393 -17.85381 -17.76576 -17.35330 -16.77871 -16.37862 -15.60587 -15.43214 -15.22831 -15.13293 -14.87057 -14.55463 -14.49848 -13.99820 -13.51006 -13.01389 -12.88369 -12.83038 -12.68222 -12.30422 -12.19073 -12.05348 -11.81840 -11.68451 -11.43811 -11.39386 -11.26806 -10.89512 -10.69957 -10.24298 -10.16640 -9.87252 -9.64301 -8.94031 -8.70309 -7.95616 -7.48737 -7.23792 -4.87375 0.65536 1.07547 2.03060 2.50663 2.86006 2.90199 2.93260 3.26199 3.59415 3.60787 3.81246 3.87942 4.15504 4.32809 4.46831 4.78917 4.85209 5.14610 5.19254 5.23044 5.26572 5.33776 5.38613 5.57565 5.78388 5.83023 5.92642 6.04038 6.20737 6.27472 6.54580 6.60703 6.69041 6.81314 6.99503 7.26616 7.32026 7.47502 7.54215 7.68098 8.01886 8.25973 8.34874 8.71074 9.60191 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.004223 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.679006 B = 6629.490376 C = 8449.407046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.002 3.998 4 C 0.112 3.888 5 F -0.129 7.129 6 C -0.153 4.153 7 C 0.042 3.958 8 C -0.032 4.032 9 C -0.233 4.233 10 C -0.026 4.026 11 C -0.179 4.179 12 C 0.298 3.702 13 N -0.505 5.505 14 C 0.145 3.855 15 C -0.423 4.423 16 H 0.088 0.912 17 C 0.076 3.924 18 N -0.764 5.764 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.129 4.129 24 C -0.147 4.147 25 C 0.115 3.885 26 F -0.128 7.128 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.151 0.849 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.293 0.707 34 H 0.134 0.866 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 -10.951 2.347 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.237 6.237 3 C -0.043 4.043 4 C 0.092 3.908 5 F -0.108 7.108 6 C -0.172 4.172 7 C 0.041 3.959 8 C -0.033 4.033 9 C -0.252 4.252 10 C -0.047 4.047 11 C -0.185 4.185 12 C -0.012 4.012 13 N -0.184 5.184 14 C 0.140 3.860 15 C -0.450 4.450 16 H 0.106 0.894 17 C -0.147 4.147 18 N -0.386 5.386 19 Si 0.737 3.263 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.148 4.148 24 C -0.166 4.166 25 C 0.095 3.905 26 F -0.106 7.106 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.169 0.831 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.240 -9.631 2.241 11.191 hybrid contribution -0.394 -0.357 -0.777 0.941 sum -5.634 -9.988 1.465 11.561 Atomic orbital electron populations 1.23093 0.78986 1.03411 1.00905 1.86121 1.20107 1.23357 1.94152 1.18499 1.05499 0.89734 0.90611 1.17564 1.00835 0.92074 0.80300 1.91494 1.91022 1.83017 1.45231 1.21288 1.01854 0.93640 1.00431 1.18741 0.92930 0.93636 0.90549 1.18318 0.99204 0.91167 0.94593 1.20118 1.11290 0.98243 0.95547 1.20390 0.95223 0.93868 0.95228 1.16996 1.16493 0.90756 0.94244 1.25768 0.91531 0.92517 0.91399 1.81035 1.14383 1.13096 1.09881 1.18333 0.87654 0.89945 0.90077 1.19837 1.13550 1.19551 0.92079 0.89362 1.26103 0.93209 0.92996 1.02372 1.69686 1.09366 1.26466 1.33063 0.86150 0.79915 0.80723 0.79497 1.18475 1.19645 1.18013 1.21486 1.02251 0.94971 0.96115 1.21435 1.00930 0.93353 1.00896 1.17600 1.00553 0.91974 0.80354 1.91506 1.90921 1.82950 1.45217 0.93347 0.93271 0.88552 0.83135 0.87850 0.87866 0.89547 0.84849 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.13 101.05 1.12 1.45 16 2 O -0.32 -4.64 10.13 -19.60 -0.20 -4.84 16 3 C 0.00 0.03 5.74 -39.04 -0.22 -0.19 16 4 C 0.11 1.64 7.30 -39.36 -0.29 1.35 16 5 F -0.13 -1.85 17.10 2.25 0.04 -1.81 16 6 C -0.15 -2.22 9.38 -39.19 -0.37 -2.59 16 7 C 0.04 0.68 5.88 -104.89 -0.62 0.06 16 8 C -0.03 -0.59 5.86 -105.03 -0.62 -1.20 16 9 C -0.23 -4.09 9.37 -39.18 -0.37 -4.46 16 10 C -0.03 -0.49 9.74 -39.27 -0.38 -0.87 16 11 C -0.18 -3.82 5.95 -104.12 -0.62 -4.44 16 12 C 0.30 6.64 14.28 -22.47 -0.32 6.32 16 13 N -0.50 -11.70 18.54 41.84 0.78 -10.92 16 14 C 0.15 3.26 5.74 -104.68 -0.60 2.66 16 15 C -0.42 -9.68 8.57 -37.85 -0.32 -10.01 16 16 H 0.09 2.07 7.38 -52.48 -0.39 1.68 16 17 C 0.08 1.61 5.16 -17.30 -0.09 1.53 16 18 N -0.76 -16.19 10.94 55.56 0.61 -15.59 16 19 Si 0.91 16.30 29.60 -169.99 -5.03 11.27 16 20 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 21 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 22 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 23 C -0.13 -2.68 8.06 -38.55 -0.31 -2.99 16 24 C -0.15 -2.33 9.38 -39.19 -0.37 -2.70 16 25 C 0.12 1.77 7.30 -39.36 -0.29 1.48 16 26 F -0.13 -1.97 17.10 2.25 0.04 -1.93 16 27 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.15 1.92 6.12 -52.49 -0.32 1.60 16 31 H 0.10 1.53 6.09 -52.49 -0.32 1.21 16 32 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.29 5.58 8.30 -40.82 -0.34 5.24 16 34 H 0.13 2.74 4.23 -52.49 -0.22 2.52 16 35 H 0.16 2.49 6.14 -52.49 -0.32 2.17 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -24.26 324.31 -5.94 -30.19 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -2.40 Total: 3.35 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -4.66 Total: -14.61 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 1.38 Total: -26.51 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.20 Total: -4.84 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 16.30 SS G_CDS: -5.03 Total: 11.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -24.26 -5.94 -30.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243225725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.172 kcal (2) G-P(sol) polarization free energy of solvation -24.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds