Wall clock time and date at job start Tue Mar 31 2020 11:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35957 * 117.00128 * 2 1 4 4 C 1.38964 * 119.94391 * 90.00378 * 3 2 1 5 5 F 1.35098 * 119.97082 * 359.97438 * 4 3 2 6 6 C 1.38099 * 120.05550 * 180.02562 * 4 3 2 7 7 C 1.39427 * 119.94670 * 0.02562 * 6 4 3 8 8 C 1.48262 * 120.05870 * 180.02562 * 7 6 4 9 9 C 1.39847 * 119.53541 * 359.97438 * 8 7 6 10 10 C 1.37699 * 121.16583 * 179.97438 * 9 8 7 11 11 C 1.39595 * 120.18916 * 0.25842 * 10 9 8 12 12 C 1.43200 * 120.45179 * 179.72005 * 11 10 9 13 13 N 9.62560 * 147.53395 * 181.45464 * 3 1 2 14 14 C 1.46541 * 119.09076 * 359.50608 * 11 10 9 15 15 C 1.40847 * 120.55456 * 180.24740 * 14 11 10 16 16 H 1.08009 * 119.99627 * 24.74204 * 15 14 11 17 17 C 1.40223 * 120.00317 * 204.74927 * 15 14 11 18 18 N 1.30666 * 120.00254 * 17.43756 * 17 15 14 19 19 Si 1.86799 * 120.00047 * 197.43670 * 17 15 14 20 20 H 1.48504 * 109.47186 * 90.00131 * 19 17 15 21 21 H 1.48503 * 109.47505 * 209.99687 * 19 17 15 22 22 H 1.48498 * 109.47293 * 330.00014 * 19 17 15 23 23 C 1.38635 * 119.54135 * 179.97438 * 8 7 6 24 24 C 1.39421 * 119.88797 * 0.26970 * 7 6 4 25 25 C 1.38102 * 119.94384 * 359.47611 * 24 7 6 26 26 F 1.35107 * 119.97401 * 180.25079 * 25 24 7 27 27 H 1.09010 * 109.47159 * 299.99409 * 1 2 3 28 28 H 1.08995 * 109.47618 * 59.99752 * 1 2 3 29 29 H 1.08997 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.02926 * 180.02562 * 6 4 3 31 31 H 1.08000 * 119.41922 * 0.02562 * 9 8 7 32 32 H 1.08007 * 119.90336 * 179.97438 * 10 9 8 33 33 H 0.96993 * 120.00054 * 184.65059 * 18 17 15 34 34 H 1.07997 * 120.13184 * 0.04768 * 23 8 7 35 35 H 1.07997 * 120.02854 * 179.70422 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.3612 1.8294 1.2041 5 9 2.0533 1.2262 2.3731 6 6 2.9877 3.0601 1.2068 7 6 3.3037 3.6828 0.0001 8 6 3.9768 5.0038 0.0001 9 6 4.2904 5.6178 1.2168 10 6 4.9158 6.8440 1.2560 11 6 5.2450 7.5022 0.0698 12 6 5.8901 8.7803 0.1040 13 7 6.4032 9.7934 0.1312 14 6 4.9258 6.8653 -1.2108 15 6 5.2489 7.4996 -2.4261 16 1 6.0521 8.2208 -2.4620 17 6 4.5277 7.1949 -3.5894 18 7 3.3653 6.6044 -3.5018 19 14 5.2285 7.6333 -5.2646 20 1 6.0440 6.5005 -5.7718 21 1 4.1167 7.9053 -6.2107 22 1 6.0821 8.8423 -5.1431 23 6 4.2866 5.6131 -1.2061 24 6 2.9811 3.0636 -1.2067 25 6 2.3593 1.8304 -1.2041 26 9 2.0510 1.2275 -2.3732 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.2327 3.5398 2.1429 31 1 4.0383 5.1211 2.1421 32 1 5.1481 7.2998 2.2072 33 1 2.8974 6.3329 -4.3068 34 1 4.0379 5.1278 -2.1383 35 1 3.2205 3.5461 -2.1427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243225725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:37 Heat of formation + Delta-G solvation = -70.393987 kcal Electronic energy + Delta-G solvation = -24585.615216 eV Core-core repulsion = 20570.200757 eV Total energy + Delta-G solvation = -4015.414459 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.08413 -50.04245 -40.80786 -39.67374 -38.33734 -36.89069 -35.80376 -33.03045 -32.02872 -31.25590 -29.91987 -27.77198 -27.58356 -24.86577 -24.34400 -22.55191 -22.45501 -19.75401 -19.23001 -19.13405 -18.56229 -18.18303 -17.49857 -17.01984 -16.73871 -16.39763 -16.38322 -15.96358 -15.82585 -15.53505 -15.51591 -14.93736 -14.57343 -14.50772 -14.25020 -13.94946 -13.63575 -13.48297 -13.41511 -13.26182 -13.12300 -13.01525 -12.74059 -12.56296 -12.33124 -12.12267 -11.78824 -11.44104 -11.19704 -11.13793 -10.26374 -9.88673 -9.52176 -8.98393 -8.75080 -6.53486 -0.62268 -0.11353 0.54840 1.00058 1.38151 1.48414 1.50570 1.98540 2.05665 2.13789 2.40684 2.59694 2.68024 2.77276 3.26859 3.48833 3.63305 3.68330 3.71228 4.05854 4.31764 4.35151 4.37430 4.40471 4.61702 4.63794 4.68779 4.73703 4.89570 4.93202 5.05049 5.16141 5.28832 5.41913 5.50060 5.75346 5.92012 6.02372 6.13334 6.22393 6.40864 6.64535 6.74910 6.97988 8.06488 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.004223 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.679006 B = 6629.490376 C = 8449.407046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.338 6.338 3 C 0.012 3.988 4 C 0.111 3.889 5 F -0.125 7.125 6 C -0.133 4.133 7 C 0.024 3.976 8 C -0.022 4.022 9 C -0.220 4.220 10 C -0.025 4.025 11 C -0.202 4.202 12 C 0.304 3.696 13 N -0.531 5.531 14 C 0.127 3.873 15 C -0.461 4.461 16 H 0.069 0.931 17 C 0.050 3.950 18 N -0.783 5.783 19 Si 0.971 3.029 20 H -0.252 1.252 21 H -0.261 1.261 22 H -0.271 1.271 23 C -0.153 4.153 24 C -0.144 4.144 25 C 0.106 3.894 26 F -0.131 7.131 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.123 0.877 30 H 0.175 0.825 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.302 0.698 34 H 0.128 0.872 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 -12.756 3.671 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.034 4.034 4 C 0.091 3.909 5 F -0.103 7.103 6 C -0.152 4.152 7 C 0.024 3.976 8 C -0.023 4.023 9 C -0.239 4.239 10 C -0.045 4.045 11 C -0.208 4.208 12 C -0.005 4.005 13 N -0.211 5.211 14 C 0.122 3.878 15 C -0.489 4.489 16 H 0.087 0.913 17 C -0.171 4.171 18 N -0.406 5.406 19 Si 0.791 3.209 20 H -0.176 1.176 21 H -0.186 1.186 22 H -0.195 1.195 23 C -0.172 4.172 24 C -0.163 4.163 25 C 0.086 3.914 26 F -0.109 7.109 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.141 0.859 30 H 0.192 0.808 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.346 -11.450 3.578 13.571 hybrid contribution -0.174 0.010 -1.043 1.058 sum -6.520 -11.440 2.535 13.409 Atomic orbital electron populations 1.23365 0.76727 1.05476 1.01407 1.86081 1.22207 1.22989 1.94202 1.18626 1.04575 0.89553 0.90596 1.17494 1.01013 0.92139 0.80254 1.91511 1.90981 1.82944 1.44870 1.21408 1.00105 0.93191 1.00469 1.18577 0.94491 0.93171 0.91410 1.18544 0.97773 0.91813 0.94218 1.20569 1.09178 0.97535 0.96632 1.20722 0.94408 0.94082 0.95312 1.17272 1.17534 0.90772 0.95198 1.26051 0.91106 0.92636 0.90706 1.81011 1.15501 1.13848 1.10701 1.18600 0.88167 0.90688 0.90368 1.19862 1.14487 1.20838 0.93701 0.91329 1.26619 0.93225 0.92819 1.04422 1.69679 1.09758 1.27012 1.34191 0.85336 0.79304 0.79938 0.76292 1.17621 1.18552 1.19495 1.21452 1.03830 0.94849 0.97055 1.21386 1.00657 0.93519 1.00728 1.17575 1.01225 0.92007 0.80570 1.91496 1.91013 1.82960 1.45429 0.92535 0.93069 0.85855 0.80802 0.84009 0.85122 0.88678 0.85419 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.13 113.37 1.26 1.70 16 2 O -0.34 -8.95 10.13 -93.06 -0.94 -9.89 16 3 C 0.01 0.34 5.74 22.62 0.13 0.47 16 4 C 0.11 2.89 7.30 22.41 0.16 3.05 16 5 F -0.12 -3.14 17.10 44.97 0.77 -2.37 16 6 C -0.13 -3.39 9.38 22.52 0.21 -3.18 16 7 C 0.02 0.73 5.88 -20.04 -0.12 0.61 16 8 C -0.02 -0.79 5.86 -20.13 -0.12 -0.91 16 9 C -0.22 -7.08 9.37 22.53 0.21 -6.87 16 10 C -0.02 -0.88 9.74 22.47 0.22 -0.66 16 11 C -0.20 -8.67 5.95 -19.54 -0.12 -8.78 16 12 C 0.30 13.80 14.28 88.33 1.26 15.07 16 13 N -0.53 -25.08 18.54 19.00 0.35 -24.73 16 14 C 0.13 5.84 5.74 -19.90 -0.11 5.73 16 15 C -0.46 -22.09 8.57 23.39 0.20 -21.89 16 16 H 0.07 3.42 7.38 -2.91 -0.02 3.40 16 17 C 0.05 2.19 5.16 85.35 0.44 2.63 16 18 N -0.78 -33.95 10.94 21.87 0.24 -33.71 16 19 Si 0.97 34.15 29.60 68.60 2.03 36.18 16 20 H -0.25 -8.45 7.11 99.48 0.71 -7.75 16 21 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 22 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 23 C -0.15 -6.40 8.06 22.94 0.18 -6.21 16 24 C -0.14 -4.44 9.38 22.52 0.21 -4.23 16 25 C 0.11 3.12 7.30 22.41 0.16 3.28 16 26 F -0.13 -3.91 17.10 44.97 0.77 -3.15 16 27 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.12 1.58 8.14 -2.39 -0.02 1.57 16 30 H 0.17 3.56 6.12 -2.91 -0.02 3.54 16 31 H 0.14 3.46 6.09 -2.91 -0.02 3.44 16 32 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.30 11.62 8.30 -92.71 -0.77 10.85 16 34 H 0.13 5.41 4.23 -2.91 -0.01 5.39 16 35 H 0.15 4.77 6.14 -2.91 -0.02 4.75 16 Total: -1.00 -52.84 324.31 8.59 -44.24 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.18 Total: 13.61 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 4.19 Total: -20.19 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.59 Total: -58.44 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.94 Total: -9.89 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 1.54 Total: -5.52 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal Total: -52.84 8.59 -44.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243225725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.150 kcal (2) G-P(sol) polarization free energy of solvation -52.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds