Wall clock time and date at job start Tue Mar 31 2020 11:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35831 * 117.00040 * 2 1 4 4 C 1.38660 * 120.13115 * 274.97219 * 3 2 1 5 5 F 1.35104 * 119.98573 * 0.02562 * 4 3 2 6 6 C 1.38580 * 120.02671 * 180.27570 * 4 3 2 7 7 F 1.35102 * 119.85395 * 179.71783 * 6 4 3 8 8 C 1.38753 * 120.29438 * 359.74374 * 6 4 3 9 9 C 1.37804 * 120.26323 * 0.02562 * 8 6 4 10 10 C 1.39680 * 119.96560 * 359.97438 * 9 8 6 11 11 C 1.47846 * 120.13976 * 179.97438 * 10 9 8 12 12 C 1.40064 * 119.50498 * 55.84591 * 11 10 9 13 13 C 1.35957 * 121.18463 * 180.02562 * 12 11 10 14 14 C 1.41075 * 120.11319 * 359.95890 * 13 12 11 15 15 C 1.40395 * 120.47866 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00108 * 204.84345 * 15 14 13 17 17 C 1.40269 * 119.99896 * 24.84534 * 15 14 13 18 18 N 1.30652 * 120.00205 * 15.73114 * 17 15 14 19 19 Si 1.86807 * 119.99662 * 195.72899 * 17 15 14 20 20 H 1.48493 * 109.47069 * 265.07656 * 19 17 15 21 21 H 1.48498 * 109.46961 * 25.08093 * 19 17 15 22 22 H 1.48497 * 109.46524 * 145.08138 * 19 17 15 23 23 C 1.46662 * 119.03875 * 0.29469 * 14 13 12 24 24 C 1.43205 * 120.56225 * 179.72598 * 23 14 13 25 25 N 5.66779 * 109.99388 * 127.67205 * 2 1 3 26 26 C 1.39038 * 118.87453 * 359.44202 * 23 14 13 27 27 H 1.09001 * 109.47492 * 304.78934 * 1 2 3 28 28 H 1.09004 * 109.46898 * 64.78529 * 1 2 3 29 29 H 1.08997 * 109.47405 * 184.78843 * 1 2 3 30 30 H 1.08002 * 119.87394 * 179.97438 * 8 6 4 31 31 H 1.07999 * 120.02102 * 180.02562 * 9 8 6 32 32 H 1.07992 * 119.41193 * 359.97438 * 12 11 10 33 33 H 1.07994 * 119.94109 * 179.97438 * 13 12 11 34 34 H 0.96999 * 120.00292 * 179.97438 * 18 17 15 35 35 H 1.08003 * 120.10365 * 180.24676 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 2.2691 1.8776 -1.1947 5 9 1.8725 1.3242 -2.3617 6 6 2.9035 3.1097 -1.1927 7 9 3.1245 3.7542 -2.3593 8 6 3.3133 3.6840 0.0021 9 6 3.0932 3.0335 1.1968 10 6 2.4546 1.7912 1.2075 11 6 2.2170 1.0897 2.4870 12 6 1.5104 1.7377 3.5081 13 6 1.2729 1.1249 4.6983 14 6 1.7391 -0.1873 4.9243 15 6 1.4978 -0.8275 6.1502 16 1 2.1533 -1.6179 6.4849 17 6 0.4052 -0.4407 6.9403 18 7 -0.5535 0.2797 6.4217 19 14 0.3209 -0.9557 8.7340 20 1 -0.4829 -2.1984 8.8549 21 1 1.6939 -1.2026 9.2431 22 1 -0.3153 0.1247 9.5296 23 6 2.4847 -0.8707 3.8622 24 6 2.9780 -2.2006 4.0587 25 7 3.3669 -3.2551 4.2158 26 6 2.6994 -0.2076 2.6591 27 1 -0.3634 0.5863 0.8440 28 1 -0.3633 0.4378 -0.9298 29 1 -0.3634 -1.0240 0.0858 30 1 3.8075 4.6442 -0.0043 31 1 3.4134 3.4843 2.1245 32 1 1.1484 2.7423 3.3475 33 1 0.7262 1.6434 5.4719 34 1 -1.3092 0.5468 6.9679 35 1 3.2425 -0.6936 1.8620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243302875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:28 Heat of formation + Delta-G solvation = -62.032510 kcal Electronic energy + Delta-G solvation = -24849.383131 eV Core-core repulsion = 20834.331253 eV Total energy + Delta-G solvation = -4015.051878 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.31967 -48.39441 -39.70377 -37.70029 -36.93823 -35.19951 -34.34899 -31.46044 -30.25961 -29.90767 -28.90447 -26.79702 -25.63700 -22.83858 -22.69621 -22.07154 -20.82192 -18.28124 -17.89606 -17.60259 -17.36932 -16.44914 -16.32079 -15.70402 -15.63598 -15.11936 -14.69387 -14.66793 -14.40303 -14.20329 -14.08769 -13.91882 -13.07556 -12.89104 -12.73611 -12.46233 -12.08788 -12.03462 -11.87820 -11.81098 -11.66706 -11.37160 -11.31062 -11.18834 -10.96943 -10.68037 -10.14940 -9.98263 -9.78280 -9.60192 -8.68536 -8.60184 -7.86221 -7.60485 -7.29843 -4.87126 0.97049 1.02331 2.10484 2.50890 2.82579 2.85186 2.91783 3.33446 3.56844 3.70599 3.86246 4.05481 4.15754 4.35401 4.47448 4.80566 4.95723 5.15518 5.29982 5.40954 5.46163 5.57597 5.59600 5.85159 5.89442 5.94528 6.04229 6.13718 6.25071 6.41457 6.52881 6.67372 6.73967 6.90800 7.10321 7.35002 7.52871 7.62562 7.65528 7.73272 8.08097 8.26591 8.41511 8.76051 9.55982 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.003629 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.875799 B = 7713.097409 C = 8131.944931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.315 6.315 3 C 0.080 3.920 4 C 0.047 3.953 5 F -0.129 7.129 6 C 0.048 3.952 7 F -0.135 7.135 8 C -0.127 4.127 9 C -0.094 4.094 10 C 0.018 3.982 11 C -0.215 4.215 12 C -0.052 4.052 13 C -0.167 4.167 14 C 0.156 3.844 15 C -0.415 4.415 16 H 0.088 0.912 17 C 0.074 3.926 18 N -0.754 5.754 19 Si 0.917 3.083 20 H -0.264 1.264 21 H -0.254 1.254 22 H -0.268 1.268 23 C -0.190 4.190 24 C 0.300 3.700 25 N -0.506 5.506 26 C 0.021 3.979 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.293 0.707 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 8.646 -5.917 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.034 3.966 4 C 0.026 3.974 5 F -0.108 7.108 6 C 0.028 3.972 7 F -0.114 7.114 8 C -0.146 4.146 9 C -0.112 4.112 10 C 0.017 3.983 11 C -0.217 4.217 12 C -0.072 4.072 13 C -0.186 4.186 14 C 0.150 3.850 15 C -0.441 4.441 16 H 0.106 0.894 17 C -0.150 4.150 18 N -0.375 5.375 19 Si 0.739 3.261 20 H -0.189 1.189 21 H -0.177 1.177 22 H -0.193 1.193 23 C -0.196 4.196 24 C -0.010 4.010 25 N -0.185 5.185 26 C 0.000 4.000 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.124 6.933 -5.712 8.983 hybrid contribution -0.588 0.404 0.091 0.719 sum -0.464 7.336 -5.620 9.253 Atomic orbital electron populations 1.23010 0.78439 1.03724 1.00476 1.86059 1.20238 1.22943 1.93860 1.18636 0.99899 0.88116 0.89924 1.18061 1.04100 0.92902 0.82322 1.91482 1.88891 1.84968 1.45435 1.17502 1.05298 0.91708 0.82659 1.91486 1.93131 1.80717 1.46085 1.20987 1.01925 1.01366 0.90311 1.21238 0.97765 0.94460 0.97729 1.19224 0.94240 0.92560 0.92230 1.17442 1.14769 0.96148 0.93335 1.20392 0.96194 0.97662 0.92912 1.20924 1.05497 0.94704 0.97511 1.18506 0.86275 0.90507 0.89682 1.19870 1.07958 1.15195 1.01078 0.89353 1.26186 0.94231 0.92940 1.01652 1.69702 1.05668 1.23928 1.38211 0.86105 0.80493 0.79562 0.79896 1.18864 1.17733 1.19286 1.16760 1.17398 0.88490 0.96960 1.25688 0.91247 0.92537 0.91520 1.80980 1.14274 1.13004 1.10251 1.20517 0.93878 0.91892 0.93669 0.92503 0.94128 0.88631 0.83955 0.83717 0.88651 0.85365 0.89559 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 11.13 101.05 1.12 1.66 16 2 O -0.31 -5.41 9.05 -19.21 -0.17 -5.58 16 3 C 0.08 1.31 5.66 -38.73 -0.22 1.09 16 4 C 0.05 0.74 7.31 -39.30 -0.29 0.45 16 5 F -0.13 -2.11 17.01 2.25 0.04 -2.08 16 6 C 0.05 0.68 7.31 -39.26 -0.29 0.40 16 7 F -0.14 -1.93 17.17 2.25 0.04 -1.89 16 8 C -0.13 -1.52 10.00 -39.55 -0.40 -1.92 16 9 C -0.09 -1.22 9.59 -39.20 -0.38 -1.59 16 10 C 0.02 0.29 5.39 -104.73 -0.56 -0.27 16 11 C -0.22 -3.91 5.17 -104.82 -0.54 -4.45 16 12 C -0.05 -0.96 9.44 -39.72 -0.37 -1.34 16 13 C -0.17 -3.48 8.62 -39.32 -0.34 -3.82 16 14 C 0.16 3.51 5.74 -104.61 -0.60 2.91 16 15 C -0.41 -9.48 8.57 -38.01 -0.33 -9.81 16 16 H 0.09 2.06 7.36 -52.48 -0.39 1.68 16 17 C 0.07 1.56 5.19 -17.29 -0.09 1.47 16 18 N -0.75 -15.95 10.85 55.56 0.60 -15.34 16 19 Si 0.92 16.05 29.59 -169.99 -5.03 11.02 16 20 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 21 H -0.25 -4.52 7.11 56.52 0.40 -4.12 16 22 H -0.27 -4.49 7.11 56.52 0.40 -4.09 16 23 C -0.19 -4.16 5.93 -104.27 -0.62 -4.78 16 24 C 0.30 6.86 14.28 -22.51 -0.32 6.54 16 25 N -0.51 -11.98 18.53 41.79 0.77 -11.20 16 26 C 0.02 0.42 8.59 -38.83 -0.33 0.09 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.13 2.71 6.11 -52.49 -0.32 2.39 16 34 H 0.29 5.52 8.29 -40.82 -0.34 5.19 16 35 H 0.10 1.97 8.02 -52.48 -0.42 1.55 16 LS Contribution 329.82 15.07 4.97 4.97 Total: -1.00 -24.58 329.82 -6.13 -30.71 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -2.80 Total: 2.77 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -4.55 Total: -13.37 kcal Atomic # 7 Polarization: -27.92 SS G_CDS: 1.38 Total: -26.55 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.17 Total: -5.58 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.08 Total: -3.97 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: -5.03 Total: 11.02 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -24.58 -6.13 -30.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243302875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.326 kcal (2) G-P(sol) polarization free energy of solvation -24.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds