Wall clock time and date at job start Tue Mar 31 2020 11:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35831 * 117.00040 * 2 1 4 4 C 1.38660 * 120.13115 * 274.97219 * 3 2 1 5 5 F 1.35104 * 119.98573 * 0.02562 * 4 3 2 6 6 C 1.38580 * 120.02671 * 180.27570 * 4 3 2 7 7 F 1.35102 * 119.85395 * 179.71783 * 6 4 3 8 8 C 1.38753 * 120.29438 * 359.74374 * 6 4 3 9 9 C 1.37804 * 120.26323 * 0.02562 * 8 6 4 10 10 C 1.39680 * 119.96560 * 359.97438 * 9 8 6 11 11 C 1.47846 * 120.13976 * 179.97438 * 10 9 8 12 12 C 1.40064 * 119.50498 * 55.84591 * 11 10 9 13 13 C 1.35957 * 121.18463 * 180.02562 * 12 11 10 14 14 C 1.41075 * 120.11319 * 359.95890 * 13 12 11 15 15 C 1.40395 * 120.47866 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00108 * 204.84345 * 15 14 13 17 17 C 1.40269 * 119.99896 * 24.84534 * 15 14 13 18 18 N 1.30652 * 120.00205 * 15.73114 * 17 15 14 19 19 Si 1.86807 * 119.99662 * 195.72899 * 17 15 14 20 20 H 1.48493 * 109.47069 * 265.07656 * 19 17 15 21 21 H 1.48498 * 109.46961 * 25.08093 * 19 17 15 22 22 H 1.48497 * 109.46524 * 145.08138 * 19 17 15 23 23 C 1.46662 * 119.03875 * 0.29469 * 14 13 12 24 24 C 1.43205 * 120.56225 * 179.72598 * 23 14 13 25 25 N 5.66779 * 109.99388 * 127.67205 * 2 1 3 26 26 C 1.39038 * 118.87453 * 359.44202 * 23 14 13 27 27 H 1.09001 * 109.47492 * 304.78934 * 1 2 3 28 28 H 1.09004 * 109.46898 * 64.78529 * 1 2 3 29 29 H 1.08997 * 109.47405 * 184.78843 * 1 2 3 30 30 H 1.08002 * 119.87394 * 179.97438 * 8 6 4 31 31 H 1.07999 * 120.02102 * 180.02562 * 9 8 6 32 32 H 1.07992 * 119.41193 * 359.97438 * 12 11 10 33 33 H 1.07994 * 119.94109 * 179.97438 * 13 12 11 34 34 H 0.96999 * 120.00292 * 179.97438 * 18 17 15 35 35 H 1.08003 * 120.10365 * 180.24676 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 2.2691 1.8776 -1.1947 5 9 1.8725 1.3242 -2.3617 6 6 2.9035 3.1097 -1.1927 7 9 3.1245 3.7542 -2.3593 8 6 3.3133 3.6840 0.0021 9 6 3.0932 3.0335 1.1968 10 6 2.4546 1.7912 1.2075 11 6 2.2170 1.0897 2.4870 12 6 1.5104 1.7377 3.5081 13 6 1.2729 1.1249 4.6983 14 6 1.7391 -0.1873 4.9243 15 6 1.4978 -0.8275 6.1502 16 1 2.1533 -1.6179 6.4849 17 6 0.4052 -0.4407 6.9403 18 7 -0.5535 0.2797 6.4217 19 14 0.3209 -0.9557 8.7340 20 1 -0.4829 -2.1984 8.8549 21 1 1.6939 -1.2026 9.2431 22 1 -0.3153 0.1247 9.5296 23 6 2.4847 -0.8707 3.8622 24 6 2.9780 -2.2006 4.0587 25 7 3.3669 -3.2551 4.2158 26 6 2.6994 -0.2076 2.6591 27 1 -0.3634 0.5863 0.8440 28 1 -0.3633 0.4378 -0.9298 29 1 -0.3634 -1.0240 0.0858 30 1 3.8075 4.6442 -0.0043 31 1 3.4134 3.4843 2.1245 32 1 1.1484 2.7423 3.3475 33 1 0.7262 1.6434 5.4719 34 1 -1.3092 0.5468 6.9679 35 1 3.2425 -0.6936 1.8620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243302875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:27 Heat of formation + Delta-G solvation = -71.257584 kcal Electronic energy + Delta-G solvation = -24849.783160 eV Core-core repulsion = 20834.331253 eV Total energy + Delta-G solvation = -4015.451907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.48850 -49.56661 -40.94972 -39.24209 -38.14351 -36.98111 -35.89698 -32.89750 -31.68117 -31.21019 -30.31488 -28.00109 -27.10207 -24.20813 -24.01528 -23.46020 -22.28846 -19.60769 -19.38940 -18.97528 -18.55584 -17.79559 -17.52510 -17.17315 -16.87404 -16.30878 -16.05618 -15.90542 -15.72237 -15.57756 -15.33751 -15.26201 -14.59513 -14.51397 -14.11616 -13.78425 -13.73468 -13.51614 -13.27712 -13.17047 -13.09576 -12.81170 -12.75987 -12.47034 -12.36205 -12.06209 -11.66835 -11.54086 -11.21185 -11.00451 -9.89599 -9.80534 -9.46109 -9.11736 -8.84737 -6.53247 -0.19621 -0.09856 0.47332 0.98521 1.38690 1.47067 1.52739 2.05183 2.13526 2.18717 2.38709 2.58013 2.68355 2.98442 3.35083 3.56680 3.62627 3.72832 3.90067 4.15046 4.35618 4.38296 4.42003 4.46934 4.61410 4.76907 4.81036 4.91419 4.95572 5.04913 5.13793 5.22625 5.36354 5.50890 5.62408 5.80524 5.91254 6.08893 6.12545 6.41310 6.46012 6.63142 6.79580 6.97811 8.03623 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.003629 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.875799 B = 7713.097409 C = 8131.944931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.338 6.338 3 C 0.072 3.928 4 C 0.027 3.973 5 F -0.139 7.139 6 C 0.054 3.946 7 F -0.135 7.135 8 C -0.108 4.108 9 C -0.076 4.076 10 C -0.005 4.005 11 C -0.193 4.193 12 C -0.041 4.041 13 C -0.179 4.179 14 C 0.138 3.862 15 C -0.452 4.452 16 H 0.069 0.931 17 C 0.048 3.952 18 N -0.774 5.774 19 Si 0.975 3.025 20 H -0.267 1.267 21 H -0.263 1.263 22 H -0.250 1.250 23 C -0.212 4.212 24 C 0.304 3.696 25 N -0.532 5.532 26 C 0.015 3.985 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.184 0.816 31 H 0.172 0.828 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.303 0.697 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 11.373 -6.356 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.255 6.255 3 C 0.027 3.973 4 C 0.007 3.993 5 F -0.117 7.117 6 C 0.034 3.966 7 F -0.114 7.114 8 C -0.126 4.126 9 C -0.094 4.094 10 C -0.006 4.006 11 C -0.194 4.194 12 C -0.060 4.060 13 C -0.198 4.198 14 C 0.133 3.867 15 C -0.478 4.478 16 H 0.088 0.912 17 C -0.174 4.174 18 N -0.396 5.396 19 Si 0.796 3.204 20 H -0.192 1.192 21 H -0.187 1.187 22 H -0.173 1.173 23 C -0.218 4.218 24 C -0.005 4.005 25 N -0.212 5.212 26 C -0.006 4.006 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.201 0.799 31 H 0.189 0.811 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.115 0.885 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.179 9.673 -6.172 11.476 hybrid contribution -0.576 -0.306 -0.012 0.652 sum -0.397 9.368 -6.184 11.232 Atomic orbital electron populations 1.23127 0.77313 1.04476 1.00924 1.86015 1.21534 1.23932 1.94035 1.18759 1.00229 0.87911 0.90436 1.18208 1.05417 0.93816 0.81874 1.91453 1.89171 1.85293 1.45806 1.17736 1.04434 0.91017 0.83422 1.91495 1.93014 1.80533 1.46349 1.21349 1.00289 1.02317 0.88622 1.21497 0.95865 0.92709 0.99316 1.19175 0.96575 0.94036 0.90769 1.17624 1.12413 0.95230 0.94132 1.20670 0.94773 0.98799 0.91749 1.20927 1.06138 0.94162 0.98575 1.18755 0.86770 0.91396 0.89812 1.19911 1.09275 1.16122 1.02515 0.91234 1.26724 0.93364 0.92855 1.04499 1.69680 1.06039 1.24363 1.39511 0.85259 0.79826 0.79468 0.75892 1.19179 1.18687 1.17305 1.16944 1.18603 0.88316 0.97914 1.26008 0.90785 0.92784 0.90878 1.80944 1.15491 1.13694 1.11073 1.20601 0.94293 0.92801 0.92862 0.93054 0.92774 0.87680 0.79914 0.81086 0.85444 0.85842 0.88472 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 11.13 113.37 1.26 2.25 16 2 O -0.34 -11.46 9.05 -91.65 -0.83 -12.29 16 3 C 0.07 2.24 5.66 22.82 0.13 2.37 16 4 C 0.03 0.81 7.31 22.45 0.16 0.97 16 5 F -0.14 -4.40 17.01 44.97 0.77 -3.63 16 6 C 0.05 1.34 7.31 22.47 0.16 1.51 16 7 F -0.14 -3.43 17.17 44.97 0.77 -2.66 16 8 C -0.11 -2.04 10.00 22.29 0.22 -1.81 16 9 C -0.08 -1.63 9.59 22.52 0.22 -1.42 16 10 C 0.00 -0.14 5.39 -19.93 -0.11 -0.25 16 11 C -0.19 -6.68 5.17 -19.99 -0.10 -6.78 16 12 C -0.04 -1.42 9.44 22.18 0.21 -1.21 16 13 C -0.18 -7.38 8.62 22.44 0.19 -7.18 16 14 C 0.14 6.37 5.74 -19.86 -0.11 6.25 16 15 C -0.45 -21.42 8.57 23.29 0.20 -21.22 16 16 H 0.07 3.44 7.36 -2.91 -0.02 3.42 16 17 C 0.05 2.04 5.19 85.36 0.44 2.49 16 18 N -0.77 -32.75 10.85 21.88 0.24 -32.52 16 19 Si 0.98 33.04 29.59 68.60 2.03 35.07 16 20 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 22 H -0.25 -7.63 7.11 99.48 0.71 -6.92 16 23 C -0.21 -9.50 5.93 -19.64 -0.12 -9.62 16 24 C 0.30 14.44 14.28 88.35 1.26 15.70 16 25 N -0.53 -26.09 18.53 18.99 0.35 -25.74 16 26 C 0.02 0.60 8.59 22.76 0.20 0.80 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.18 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.12 5.19 6.11 -2.91 -0.02 5.17 16 34 H 0.30 11.28 8.29 -92.71 -0.77 10.51 16 35 H 0.10 4.02 8.02 -2.91 -0.02 4.00 16 Total: -1.00 -54.45 329.82 8.71 -45.74 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.16 Total: 13.16 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.22 Total: -17.14 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.59 Total: -58.25 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.83 Total: -12.29 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 1.54 Total: -6.29 kcal Atomic # 14 Polarization: 33.04 SS G_CDS: 2.03 Total: 35.07 kcal Total: -54.45 8.71 -45.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243302875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.516 kcal (2) G-P(sol) polarization free energy of solvation -54.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds