Wall clock time and date at job start Tue Mar 31 2020 11:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36019 * 116.99550 * 2 1 4 4 C 1.38996 * 119.99610 * 90.00785 * 3 2 1 5 5 F 1.35101 * 119.88814 * 359.97438 * 4 3 2 6 6 C 1.38572 * 120.22446 * 180.02562 * 4 3 2 7 7 C 1.37918 * 120.21864 * 359.97160 * 6 4 3 8 8 C 1.39642 * 119.99574 * 0.02562 * 7 6 4 9 9 C 1.47924 * 120.11258 * 180.02562 * 8 7 6 10 10 C 1.40020 * 119.50516 * 129.99806 * 9 8 7 11 11 C 1.35981 * 121.18927 * 179.97438 * 10 9 8 12 12 C 1.41055 * 120.11276 * 359.97438 * 11 10 9 13 13 C 1.40414 * 120.48852 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00350 * 208.77113 * 13 12 11 15 15 C 1.40278 * 119.99794 * 28.76237 * 13 12 11 16 16 N 1.30647 * 120.00115 * 197.55742 * 15 13 12 17 17 Si 1.86808 * 120.00187 * 17.55818 * 15 13 12 18 18 H 1.48500 * 109.46949 * 270.00171 * 17 15 13 19 19 H 1.48505 * 109.46654 * 29.99578 * 17 15 13 20 20 H 1.48499 * 109.47300 * 149.99771 * 17 15 13 21 21 C 1.46661 * 119.03112 * 0.27158 * 12 11 10 22 22 C 1.43192 * 120.56389 * 179.74919 * 21 12 11 23 23 N 9.28111 * 97.47435 * 332.41997 * 2 1 3 24 24 C 1.39064 * 118.86916 * 359.49596 * 21 12 11 25 25 C 1.38532 * 120.00043 * 270.25579 * 3 2 1 26 26 F 1.35104 * 120.11058 * 0.02562 * 25 3 2 27 27 H 1.09007 * 109.46979 * 299.99705 * 1 2 3 28 28 H 1.08996 * 109.47777 * 59.99833 * 1 2 3 29 29 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.89259 * 179.97438 * 6 4 3 31 31 H 1.07999 * 120.00109 * 180.02562 * 7 6 4 32 32 H 1.07996 * 119.40449 * 359.95573 * 10 9 8 33 33 H 1.07997 * 119.94232 * 179.97438 * 11 10 9 34 34 H 0.97000 * 120.00189 * 355.45017 * 16 15 13 35 35 H 1.08000 * 120.10207 * 180.24833 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 2.3620 1.8311 1.2038 5 9 2.0540 1.2273 2.3724 6 6 2.9905 3.0661 1.2093 7 6 3.3077 3.6889 0.0203 8 6 2.9949 3.0751 -1.1944 9 6 3.3344 3.7405 -2.4711 10 6 4.0172 3.0243 -3.4618 11 6 4.3459 3.6019 -4.6481 12 6 3.9994 4.9457 -4.9011 13 6 4.3345 5.5498 -6.1235 14 1 4.5074 6.6147 -6.1701 15 6 4.4447 4.7699 -7.2843 16 7 5.0753 5.2380 -8.3284 17 14 3.6897 3.0620 -7.3373 18 1 4.6872 2.0652 -6.8720 19 1 2.4980 3.0200 -6.4522 20 1 3.2837 2.7432 -8.7297 21 6 3.2889 5.7043 -3.8664 22 6 2.9261 7.0719 -4.0863 23 7 2.6363 8.1565 -4.2605 24 6 2.9690 5.0713 -2.6702 25 6 2.3561 1.8316 -1.1997 26 9 2.0454 1.2343 -2.3710 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.2329 3.5424 2.1477 31 1 3.7979 4.6511 0.0287 32 1 4.2880 1.9947 -3.2802 33 1 4.8731 3.0308 -5.3980 34 1 5.4098 6.1485 -8.3250 35 1 2.4424 5.6099 -1.8963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243507805.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:53 Heat of formation + Delta-G solvation = -76.285623 kcal Electronic energy + Delta-G solvation = -24768.416045 eV Core-core repulsion = 20752.746106 eV Total energy + Delta-G solvation = -4015.669939 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.97910 -49.90339 -40.64931 -39.80605 -38.37782 -37.08816 -35.98002 -33.27503 -32.06967 -31.27005 -30.45422 -27.90951 -26.95833 -24.53918 -23.83538 -23.40025 -22.57663 -20.29975 -19.70908 -19.01597 -18.55582 -18.11004 -17.41057 -16.81801 -16.66023 -16.43768 -16.22060 -15.96368 -15.92884 -15.64084 -15.48498 -15.25290 -15.01435 -14.61204 -14.42740 -13.95742 -13.80457 -13.62477 -13.40620 -13.23582 -13.04542 -12.93387 -12.64480 -12.51387 -12.25015 -12.09371 -11.79231 -11.50232 -11.15460 -10.98037 -10.12237 -9.82151 -9.69224 -9.61797 -9.13841 -6.79245 -0.27041 -0.10177 0.23164 0.75722 1.37696 1.54393 1.75945 1.90733 2.06277 2.12637 2.25026 2.52124 2.62534 2.86553 3.33009 3.41386 3.43617 3.74204 3.82742 4.04484 4.13294 4.34656 4.37181 4.38684 4.47642 4.70214 4.72829 4.75353 4.80162 4.91679 5.04283 5.16708 5.18412 5.29903 5.44166 5.53957 5.63920 5.78577 5.84994 6.13542 6.27075 6.32226 6.51701 6.82293 7.71954 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017604 B = 0.004072 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.199715 B = 6873.873058 C = 7916.657020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.342 6.342 3 C 0.020 3.980 4 C 0.085 3.915 5 F -0.132 7.132 6 C -0.127 4.127 7 C -0.061 4.061 8 C -0.037 4.037 9 C -0.194 4.194 10 C -0.015 4.015 11 C -0.249 4.249 12 C 0.128 3.872 13 C -0.503 4.503 14 H 0.052 0.948 15 C 0.018 3.982 16 N -0.803 5.803 17 Si 1.093 2.907 18 H -0.242 1.242 19 H -0.253 1.253 20 H -0.279 1.279 21 C -0.191 4.191 22 C 0.303 3.697 23 N -0.521 5.521 24 C 0.023 3.977 25 C 0.089 3.911 26 F -0.132 7.132 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.120 0.880 30 H 0.179 0.821 31 H 0.170 0.830 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.286 0.714 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 -10.595 16.698 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.259 6.259 3 C -0.026 4.026 4 C 0.065 3.935 5 F -0.111 7.111 6 C -0.145 4.145 7 C -0.079 4.079 8 C -0.038 4.038 9 C -0.196 4.196 10 C -0.033 4.033 11 C -0.268 4.268 12 C 0.123 3.877 13 C -0.530 4.530 14 H 0.070 0.930 15 C -0.202 4.202 16 N -0.423 5.423 17 Si 0.912 3.088 18 H -0.167 1.167 19 H -0.177 1.177 20 H -0.206 1.206 21 C -0.196 4.196 22 C -0.007 4.007 23 N -0.200 5.200 24 C 0.002 3.998 25 C 0.069 3.931 26 F -0.111 7.111 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.138 0.862 30 H 0.197 0.803 31 H 0.188 0.812 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.459 -10.362 15.389 19.339 hybrid contribution 0.304 1.453 0.230 1.502 sum -5.155 -8.910 15.619 18.706 Atomic orbital electron populations 1.23319 0.76850 1.05323 1.01282 1.86091 1.22121 1.23440 1.94247 1.18607 1.04036 0.89185 0.90785 1.17921 1.02616 0.93173 0.79791 1.91491 1.91178 1.83260 1.45139 1.21371 0.99186 0.92619 1.01326 1.21396 0.96988 1.00863 0.88623 1.18857 0.98240 0.92005 0.94694 1.17738 1.12648 0.94226 0.94951 1.20688 0.92526 0.98415 0.91701 1.20817 1.10490 0.95776 0.99704 1.18722 0.86131 0.91812 0.91049 1.20789 1.40511 0.96580 0.95130 0.93024 1.28620 0.91340 1.09210 0.90987 1.70512 1.21225 1.18120 1.32490 0.83403 0.78559 0.69805 0.77036 1.16651 1.17686 1.20607 1.16912 1.15349 0.87078 1.00290 1.25916 0.91054 0.92666 0.91043 1.81046 1.14484 1.13622 1.10859 1.20867 0.92854 0.92613 0.93449 1.18066 1.01826 0.92817 0.80424 1.91485 1.90889 1.83086 1.45593 0.92436 0.93294 0.86151 0.80335 0.81211 0.85912 0.86196 0.90286 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.13 113.37 1.26 1.74 16 2 O -0.34 -8.89 10.14 -93.77 -0.95 -9.84 16 3 C 0.02 0.50 5.73 22.52 0.13 0.63 16 4 C 0.08 1.85 7.31 22.53 0.16 2.02 16 5 F -0.13 -2.95 17.10 44.97 0.77 -2.18 16 6 C -0.13 -2.12 10.00 22.27 0.22 -1.90 16 7 C -0.06 -1.16 9.47 22.53 0.21 -0.95 16 8 C -0.04 -0.96 5.45 -19.99 -0.11 -1.07 16 9 C -0.19 -6.14 5.33 -19.99 -0.11 -6.25 16 10 C -0.01 -0.50 8.71 22.18 0.19 -0.31 16 11 C -0.25 -9.90 7.20 22.44 0.16 -9.74 16 12 C 0.13 5.74 5.30 -19.86 -0.11 5.64 16 13 C -0.50 -25.16 8.90 23.30 0.21 -24.95 16 14 H 0.05 2.85 7.61 -2.91 -0.02 2.82 16 15 C 0.02 0.85 5.42 85.37 0.46 1.32 16 16 N -0.80 -40.35 13.64 21.88 0.30 -40.05 16 17 Si 1.09 42.86 24.90 68.60 1.71 44.57 16 18 H -0.24 -8.40 6.44 99.48 0.64 -7.76 16 19 H -0.25 -9.77 7.02 99.48 0.70 -9.08 16 20 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 21 C -0.19 -7.83 5.93 -19.64 -0.12 -7.95 16 22 C 0.30 13.37 14.34 88.33 1.27 14.64 16 23 N -0.52 -24.19 18.54 19.00 0.35 -23.84 16 24 C 0.02 0.75 9.18 22.76 0.21 0.96 16 25 C 0.09 2.47 7.14 22.72 0.16 2.64 16 26 F -0.13 -4.17 15.70 44.97 0.71 -3.46 16 27 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.17 2.49 8.02 -2.91 -0.02 2.47 16 32 H 0.12 3.77 7.72 -2.91 -0.02 3.74 16 33 H 0.12 4.66 4.39 -2.91 -0.01 4.64 16 34 H 0.29 14.34 8.72 -92.71 -0.81 13.53 16 35 H 0.14 3.72 8.01 -2.91 -0.02 3.69 16 Total: -1.00 -57.29 324.10 8.15 -49.13 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.05 Total: 9.21 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.22 Total: -23.54 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: 0.65 Total: -63.90 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.95 Total: -9.84 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.48 Total: -5.64 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.71 Total: 44.57 kcal Total: -57.29 8.15 -49.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243507805.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.153 kcal (2) G-P(sol) polarization free energy of solvation -57.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds