Wall clock time and date at job start Tue Mar 31 2020 11:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47397 * 2 1 4 4 C 1.53009 * 109.47033 * 240.00232 * 2 1 3 5 5 C 1.50698 * 109.47021 * 174.99829 * 4 2 1 6 6 C 1.38266 * 119.99309 * 89.99865 * 5 4 2 7 7 C 1.38221 * 120.02865 * 179.72001 * 6 5 4 8 8 C 1.38230 * 120.01022 * 0.28491 * 7 6 5 9 9 C 1.38334 * 119.99203 * 359.97438 * 8 7 6 10 10 Cl 1.73600 * 120.01511 * 179.97438 * 9 8 7 11 11 C 1.38191 * 119.99697 * 270.27977 * 5 4 2 12 12 N 1.46503 * 109.47164 * 120.00604 * 2 1 3 13 13 C 1.38230 * 119.99422 * 274.99683 * 12 2 1 14 14 C 1.38981 * 120.00475 * 3.95159 * 13 12 2 15 15 H 1.08001 * 119.99764 * 317.83887 * 14 13 12 16 16 C 1.40820 * 120.00356 * 137.83860 * 14 13 12 17 17 N 1.30338 * 119.99691 * 341.21010 * 16 14 13 18 18 Si 1.86799 * 120.00032 * 161.20889 * 16 14 13 19 19 H 1.48502 * 109.47224 * 90.00361 * 18 16 14 20 20 H 1.48500 * 109.46996 * 209.99985 * 18 16 14 21 21 H 1.48496 * 109.47272 * 330.00031 * 18 16 14 22 22 C 1.41154 * 119.99260 * 183.94987 * 13 12 2 23 23 C 1.43206 * 119.99645 * 174.22600 * 22 13 12 24 24 N 5.93028 * 105.85544 * 83.00869 * 2 1 3 25 25 C 1.43194 * 120.00306 * 354.22510 * 22 13 12 26 26 N 4.96372 * 110.22565 * 132.58072 * 2 1 3 27 27 H 1.08994 * 109.47040 * 299.99721 * 1 2 3 28 28 H 1.09006 * 109.46858 * 59.99665 * 1 2 3 29 29 H 1.08995 * 109.46755 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46520 * 55.00231 * 4 2 1 31 31 H 1.08995 * 109.46853 * 295.00112 * 4 2 1 32 32 H 1.08001 * 119.98524 * 0.02562 * 6 5 4 33 33 H 1.07994 * 119.99354 * 180.29619 * 7 6 5 34 34 H 1.08001 * 120.00731 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00484 * 359.97438 * 11 5 4 36 36 H 0.96992 * 119.99989 * 94.99669 * 12 2 1 37 37 H 0.96995 * 119.99806 * 185.07863 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6149 -1.3128 6 6 4.3292 -1.5818 -0.7154 7 6 5.7068 -1.4880 -0.7781 8 6 6.2982 -0.4242 -1.4333 9 6 5.5112 0.5464 -2.0267 10 17 6.2533 1.8831 -2.8491 11 6 4.1321 0.4521 -1.9632 12 7 2.0184 -0.6907 1.1961 13 6 2.1504 -0.0012 2.3868 14 6 1.7430 1.3249 2.4708 15 1 1.9648 2.0100 1.6659 16 6 1.0409 1.7753 3.6054 17 7 0.4555 0.9172 4.3926 18 14 0.9486 3.6026 3.9822 19 1 -0.2457 4.1851 3.3192 20 1 0.8457 3.8007 5.4503 21 1 2.1725 4.2747 3.4766 22 6 2.6991 -0.6440 3.5174 23 6 2.9507 0.1023 4.7135 24 7 3.1503 0.6944 5.6622 25 6 3.0041 -2.0422 3.4684 26 7 3.2461 -3.1515 3.4295 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6054 -0.2616 -2.1370 31 1 1.7517 -1.7714 -1.2057 32 1 3.8675 -2.4133 -0.2037 33 1 6.3212 -2.2461 -0.3154 34 1 7.3746 -0.3508 -1.4820 35 1 3.5171 1.2095 -2.4263 36 1 2.2490 -1.6318 1.1525 37 1 -0.0892 1.2302 5.1317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258740518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:40 Heat of formation + Delta-G solvation = 60.125773 kcal Electronic energy + Delta-G solvation = -23066.082106 eV Core-core repulsion = 19640.416841 eV Total energy + Delta-G solvation = -3425.665266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.58486 -37.74432 -36.50096 -35.53469 -34.69948 -33.75932 -32.59557 -30.88326 -30.64281 -28.33902 -26.87763 -26.32097 -22.69488 -22.19213 -21.15878 -20.63505 -18.28709 -17.26222 -16.89369 -16.14885 -15.68857 -15.40046 -15.31677 -14.60318 -13.97704 -13.68462 -13.55459 -13.19172 -13.01128 -12.62152 -12.38842 -12.30425 -12.11095 -11.95589 -11.78365 -11.69733 -11.47907 -11.39572 -11.35015 -11.25388 -11.19816 -11.06800 -10.75746 -10.67812 -10.63470 -10.53042 -10.08414 -9.75531 -9.06710 -8.83335 -8.60332 -7.15184 -6.46380 -5.10589 1.20103 1.29295 2.11122 2.69538 3.01449 3.06120 3.15742 3.64723 3.75844 4.00915 4.08103 4.29547 4.59249 4.65810 4.73473 4.82127 5.02565 5.19313 5.27675 5.28878 5.46278 5.49100 5.59161 5.77479 5.82701 5.85786 5.92863 5.97662 6.10093 6.21305 6.33119 6.40233 6.55976 6.68321 6.74470 6.78575 6.84150 7.17926 7.43482 7.83666 8.26376 8.51290 8.70572 9.11112 9.54489 9.81699 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.004687 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.784541 B = 5973.044515 C = 6550.540032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.161 3.839 3 H 0.086 0.914 4 C -0.093 4.093 5 C -0.060 4.060 6 C -0.100 4.100 7 C -0.101 4.101 8 C -0.118 4.118 9 C -0.032 4.032 10 Cl -0.080 7.080 11 C -0.108 4.108 12 N -0.731 5.731 13 C 0.449 3.551 14 C -0.482 4.482 15 H 0.098 0.902 16 C 0.099 3.901 17 N -0.739 5.739 18 Si 0.906 3.094 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.255 1.255 22 C -0.298 4.298 23 C 0.356 3.644 24 N -0.549 5.549 25 C 0.307 3.693 26 N -0.549 5.549 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.384 0.616 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 1.551 -16.215 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.055 3.945 3 H 0.104 0.896 4 C -0.131 4.131 5 C -0.060 4.060 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.136 4.136 9 C -0.059 4.059 10 Cl -0.051 7.051 11 C -0.127 4.127 12 N -0.358 5.358 13 C 0.334 3.666 14 C -0.514 4.514 15 H 0.116 0.884 16 C -0.130 4.130 17 N -0.360 5.360 18 Si 0.729 3.271 19 H -0.192 1.192 20 H -0.194 1.194 21 H -0.178 1.178 22 C -0.318 4.318 23 C 0.047 3.953 24 N -0.231 5.231 25 C 0.001 3.999 26 N -0.233 5.233 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.218 0.782 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.252 0.930 -14.805 15.004 hybrid contribution -0.172 0.740 -0.041 0.761 sum 2.080 1.671 -14.846 15.084 Atomic orbital electron populations 1.22191 0.95552 1.01783 1.02544 1.20732 0.93703 0.96994 0.83034 0.89608 1.21050 0.90498 1.02351 0.99214 1.19774 0.95960 0.93910 0.96370 1.21154 0.93645 0.99013 0.98034 1.21094 0.95049 0.97671 0.98146 1.20991 0.99961 0.94007 0.98685 1.20854 0.93212 0.91317 1.00466 1.98357 1.82829 1.46249 1.77695 1.20879 0.92470 0.98666 1.00664 1.45094 1.70623 1.11244 1.08815 1.16935 0.79552 0.89698 0.80435 1.19006 1.34058 0.94051 1.04280 0.88445 1.25831 0.93285 1.00598 0.93273 1.69482 1.17347 1.37478 1.11679 0.86287 0.79971 0.81530 0.79291 1.19170 1.19445 1.17814 1.12541 1.39908 0.84726 0.94586 1.24317 0.88799 0.91374 0.90776 1.80933 1.19119 1.10546 1.12529 1.25485 0.90269 0.91978 0.92144 1.81051 1.19410 1.12704 1.10131 0.90372 0.92939 0.93156 0.89582 0.90396 0.85701 0.85248 0.85365 0.85094 0.78193 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.45 37.16 0.35 -1.73 16 2 C 0.16 2.15 2.39 -67.92 -0.16 1.99 16 3 H 0.09 1.22 6.57 -51.93 -0.34 0.88 16 4 C -0.09 -0.99 4.89 -27.88 -0.14 -1.13 16 5 C -0.06 -0.71 4.95 -104.63 -0.52 -1.23 16 6 C -0.10 -1.26 9.10 -39.58 -0.36 -1.62 16 7 C -0.10 -1.22 10.05 -39.59 -0.40 -1.62 16 8 C -0.12 -1.39 9.83 -39.55 -0.39 -1.78 16 9 C -0.03 -0.39 6.32 -39.50 -0.25 -0.64 16 10 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 16 11 C -0.11 -1.27 9.49 -39.55 -0.38 -1.65 16 12 N -0.73 -12.20 4.58 -51.91 -0.24 -12.44 16 13 C 0.45 9.26 6.20 -83.60 -0.52 8.75 16 14 C -0.48 -10.07 7.06 -38.33 -0.27 -10.35 16 15 H 0.10 1.90 6.71 -52.49 -0.35 1.54 16 16 C 0.10 2.16 4.05 -17.21 -0.07 2.09 16 17 N -0.74 -17.17 11.17 55.59 0.62 -16.55 16 18 Si 0.91 17.58 29.61 -169.99 -5.03 12.55 16 19 H -0.27 -4.84 7.11 56.52 0.40 -4.43 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.25 -4.98 7.11 56.52 0.40 -4.58 16 22 C -0.30 -6.90 5.40 -104.94 -0.57 -7.47 16 23 C 0.36 9.03 11.53 -22.47 -0.26 8.77 16 24 N -0.55 -14.46 18.54 41.84 0.78 -13.68 16 25 C 0.31 7.04 14.10 -22.47 -0.32 6.73 16 26 N -0.55 -12.75 18.54 41.84 0.78 -11.97 16 27 H 0.08 1.22 7.57 -51.93 -0.39 0.82 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.13 1.55 7.57 -52.49 -0.40 1.15 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.38 6.35 6.66 -40.82 -0.27 6.07 16 37 H 0.29 6.49 8.29 -40.82 -0.34 6.15 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -26.50 347.51 -7.45 -33.94 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -3.84 Total: 6.20 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -4.24 Total: -0.89 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 1.93 Total: -54.64 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.50 -7.45 -33.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258740518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.068 kcal (2) G-P(sol) polarization free energy of solvation -26.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds