Wall clock time and date at job start Tue Mar 31 2020 11:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35891 * 117.00178 * 2 1 4 4 C 1.38798 * 120.02988 * 0.02562 * 3 2 1 5 5 C 1.38145 * 120.05557 * 179.97438 * 4 3 2 6 6 C 1.38199 * 120.11242 * 359.74773 * 5 4 3 7 7 S 1.76195 * 119.97670 * 180.25359 * 6 5 4 8 8 O 1.42101 * 106.40565 * 228.79367 * 7 6 5 9 9 O 1.42109 * 106.40231 * 1.71547 * 7 6 5 10 10 N 1.65606 * 107.22166 * 115.25254 * 7 6 5 11 11 C 1.46500 * 119.99623 * 64.99595 * 10 7 6 12 12 C 1.53001 * 109.47093 * 165.00112 * 11 10 7 13 13 C 1.50691 * 109.47078 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00662 * 0.02562 * 13 12 11 15 15 C 1.37888 * 119.99769 * 180.02562 * 13 12 11 16 16 N 1.31508 * 119.99859 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99906 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47311 * 90.00292 * 17 15 13 19 19 H 1.48501 * 109.47124 * 210.00321 * 17 15 13 20 20 H 1.48505 * 109.47162 * 330.00012 * 17 15 13 21 21 C 1.38750 * 120.05389 * 0.50871 * 6 5 4 22 22 O 1.35891 * 120.03171 * 179.77047 * 21 6 5 23 23 C 1.42903 * 117.00396 * 179.72455 * 22 21 6 24 24 C 1.38616 * 120.02656 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46835 * 60.00391 * 1 2 3 26 26 H 1.08996 * 109.47233 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47186 * 300.00432 * 1 2 3 28 28 H 1.08000 * 119.96937 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.94392 * 180.02562 * 5 4 3 30 30 H 0.96993 * 120.00195 * 245.00624 * 10 7 6 31 31 H 1.08999 * 109.47766 * 285.00925 * 11 10 7 32 32 H 1.09013 * 109.46639 * 45.00901 * 11 10 7 33 33 H 1.09005 * 109.46832 * 300.00821 * 12 11 10 34 34 H 1.09002 * 109.46398 * 60.00446 * 12 11 10 35 35 H 0.97002 * 120.00449 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 37 37 H 1.09001 * 109.46938 * 59.99709 * 23 22 21 38 38 H 1.09004 * 109.46926 * 299.99830 * 23 22 21 39 39 H 1.08003 * 120.05589 * 0.03821 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3753 0.0005 5 6 1.9173 3.6064 0.0011 6 6 3.2972 3.6820 0.0063 7 16 4.0927 5.2541 0.0138 8 8 5.0789 5.2097 -1.0083 9 8 3.0579 6.2273 0.0536 10 7 4.9110 5.3828 1.4478 11 6 6.0312 4.4836 1.7351 12 6 6.8368 5.0329 2.9142 13 6 7.9895 4.1083 3.2093 14 1 8.1335 3.2180 2.6151 15 6 8.8604 4.3988 4.2380 16 7 9.8666 3.5921 4.4953 17 14 8.6118 5.9390 5.2653 18 1 7.7388 5.6251 6.4249 19 1 9.9270 6.4261 5.7535 20 1 7.9720 6.9904 4.4343 21 6 4.0568 2.5209 0.0004 22 8 5.4136 2.5958 0.0009 23 6 6.1317 1.3603 0.0007 24 6 3.4302 1.2839 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2121 2.3188 0.0014 29 1 1.3278 4.5114 0.0019 30 1 4.6485 6.0535 2.0975 31 1 5.6482 3.4945 1.9861 32 1 6.6742 4.4123 0.8576 33 1 7.2199 6.0221 2.6630 34 1 6.1939 5.1042 3.7915 35 1 10.4796 3.7966 5.2188 36 1 7.2028 1.5625 0.0007 37 1 5.8702 0.7882 -0.8895 38 1 5.8697 0.7877 0.8905 39 1 4.0197 0.3790 -0.0016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258962236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:16 Heat of formation + Delta-G solvation = -121.705644 kcal Electronic energy + Delta-G solvation = -24857.342361 eV Core-core repulsion = 21086.234329 eV Total energy + Delta-G solvation = -3771.108032 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76029 -39.30278 -37.03114 -36.55573 -35.49869 -35.36935 -32.64291 -31.20573 -30.30471 -29.59893 -27.70723 -27.29758 -24.47120 -23.15660 -22.33220 -20.82649 -19.38100 -18.98043 -17.74484 -17.11885 -16.90613 -16.65775 -16.44808 -16.26202 -15.85185 -15.25024 -15.14670 -14.55647 -14.18611 -14.00864 -13.88838 -13.44332 -13.24719 -12.98071 -12.70765 -12.58405 -12.01732 -11.85607 -11.82959 -11.74025 -11.62712 -11.47656 -11.40139 -11.24752 -10.95480 -10.69716 -10.41122 -9.95175 -9.83302 -9.29929 -8.95423 -8.87803 -8.57942 -8.53773 -6.09084 -4.07811 0.66724 0.90588 1.15037 2.74744 3.13416 3.19140 3.28887 3.37218 3.40749 3.52667 4.00507 4.39161 4.41974 4.57846 4.71424 4.76464 4.83320 5.00533 5.08543 5.16301 5.25059 5.25569 5.30157 5.37210 5.58626 5.72522 5.82568 5.89350 5.97716 6.23886 6.25554 6.42586 6.67891 6.88067 7.10323 7.23486 7.31877 7.44821 7.74226 8.46292 8.93993 9.52811 11.03814 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.004241 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.793534 B = 6601.304155 C = 7427.242712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.213 3.787 4 C -0.268 4.268 5 C 0.052 3.948 6 C -0.742 4.742 7 S 2.705 3.295 8 O -0.950 6.950 9 O -0.978 6.978 10 N -1.114 6.114 11 C 0.135 3.865 12 C -0.021 4.021 13 C -0.519 4.519 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.901 5.901 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.265 3.735 22 O -0.293 6.293 23 C 0.023 3.977 24 C -0.263 4.263 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.137 0.863 29 H 0.151 0.849 30 H 0.413 0.587 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.017 0.983 35 H 0.264 0.736 36 H 0.116 0.884 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.591 -6.108 -9.064 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.166 3.834 4 C -0.288 4.288 5 C 0.033 3.967 6 C -0.829 4.829 7 S 2.793 3.207 8 O -0.940 6.940 9 O -0.969 6.969 10 N -0.875 5.875 11 C 0.010 3.990 12 C -0.060 4.060 13 C -0.558 4.558 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.215 3.785 22 O -0.203 6.203 23 C -0.071 4.071 24 C -0.283 4.283 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.247 0.753 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.180 -5.735 -9.755 21.414 hybrid contribution -0.635 0.003 1.304 1.450 sum -18.815 -5.732 -8.451 21.408 Atomic orbital electron populations 1.23163 0.77676 1.04319 1.01909 1.86093 1.22059 1.26890 1.87346 1.18906 0.91698 0.84193 0.88630 1.21200 1.00358 0.92061 1.15152 1.20557 0.91358 0.98368 0.86451 1.30154 1.04007 1.20393 1.28348 1.01458 0.72939 0.72892 0.73420 1.93586 1.58862 1.86326 1.55256 1.93527 1.58448 1.57908 1.86982 1.55506 1.45943 1.47695 1.38367 1.21498 0.85768 0.90965 1.00759 1.19809 0.95615 0.97686 0.92853 1.20940 1.09150 1.09156 1.16514 0.90648 1.24981 0.94813 0.96482 0.96985 1.69891 1.15650 1.37405 1.31012 0.86795 0.77575 0.84239 0.80784 1.20328 1.21351 1.18871 1.18039 0.83140 0.91822 0.85465 1.86364 1.13856 1.34292 1.85838 1.23297 0.97883 0.84332 1.01625 1.20445 0.92706 0.97870 1.17302 0.92168 0.87898 0.92096 0.84555 0.83150 0.75278 0.92482 0.90285 0.95713 0.96495 0.92650 0.86562 0.92232 0.91594 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.24 10.49 -19.40 -0.20 -3.44 16 3 C 0.21 2.55 6.68 -39.23 -0.26 2.29 16 4 C -0.27 -2.95 9.04 -39.41 -0.36 -3.30 16 5 C 0.05 0.65 9.54 -39.63 -0.38 0.28 16 6 C -0.74 -11.12 5.90 -39.41 -0.23 -11.36 16 7 S 2.70 45.10 5.46 -107.50 -0.59 44.51 16 8 O -0.95 -18.69 16.76 -62.52 -1.05 -19.73 16 9 O -0.98 -16.87 16.96 -57.17 -0.97 -17.84 16 10 N -1.11 -18.87 6.00 -10.61 -0.06 -18.94 16 11 C 0.13 2.65 4.44 -4.04 -0.02 2.63 16 12 C -0.02 -0.47 4.18 -27.89 -0.12 -0.59 16 13 C -0.52 -14.14 9.66 -34.44 -0.33 -14.47 16 14 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 17 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 21 C 0.26 3.96 6.31 -39.23 -0.25 3.71 16 22 O -0.29 -4.57 5.54 -29.25 -0.16 -4.73 16 23 C 0.02 0.27 9.81 101.05 0.99 1.27 16 24 C -0.26 -3.43 8.97 -39.28 -0.35 -3.78 16 25 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.14 1.06 6.29 -52.49 -0.33 0.73 16 29 H 0.15 1.62 7.33 -52.48 -0.38 1.24 16 30 H 0.41 6.19 8.65 -34.47 -0.30 5.90 16 31 H 0.06 1.08 6.64 -51.93 -0.35 0.73 16 32 H 0.08 1.62 7.13 -51.92 -0.37 1.25 16 33 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 34 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 38 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 39 H 0.15 1.62 6.30 -52.48 -0.33 1.29 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -34.98 333.56 -7.16 -42.14 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.85 Total: 2.94 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.41 Total: -20.34 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.71 Total: -45.07 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -2.38 Total: -45.75 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 45.10 SS G_CDS: -0.59 Total: 44.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.98 -7.16 -42.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258962236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.561 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds