Wall clock time and date at job start Tue Mar 31 2020 11:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35891 * 117.00178 * 2 1 4 4 C 1.38798 * 120.02988 * 0.02562 * 3 2 1 5 5 C 1.38145 * 120.05557 * 179.97438 * 4 3 2 6 6 C 1.38199 * 120.11242 * 359.74773 * 5 4 3 7 7 S 1.76195 * 119.97670 * 180.25359 * 6 5 4 8 8 O 1.42101 * 106.40565 * 228.79367 * 7 6 5 9 9 O 1.42109 * 106.40231 * 1.71547 * 7 6 5 10 10 N 1.65606 * 107.22166 * 115.25254 * 7 6 5 11 11 C 1.46500 * 119.99623 * 64.99595 * 10 7 6 12 12 C 1.53001 * 109.47093 * 165.00112 * 11 10 7 13 13 C 1.50691 * 109.47078 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00662 * 0.02562 * 13 12 11 15 15 C 1.37888 * 119.99769 * 180.02562 * 13 12 11 16 16 N 1.31508 * 119.99859 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99906 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47311 * 90.00292 * 17 15 13 19 19 H 1.48501 * 109.47124 * 210.00321 * 17 15 13 20 20 H 1.48505 * 109.47162 * 330.00012 * 17 15 13 21 21 C 1.38750 * 120.05389 * 0.50871 * 6 5 4 22 22 O 1.35891 * 120.03171 * 179.77047 * 21 6 5 23 23 C 1.42903 * 117.00396 * 179.72455 * 22 21 6 24 24 C 1.38616 * 120.02656 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46835 * 60.00391 * 1 2 3 26 26 H 1.08996 * 109.47233 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47186 * 300.00432 * 1 2 3 28 28 H 1.08000 * 119.96937 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.94392 * 180.02562 * 5 4 3 30 30 H 0.96993 * 120.00195 * 245.00624 * 10 7 6 31 31 H 1.08999 * 109.47766 * 285.00925 * 11 10 7 32 32 H 1.09013 * 109.46639 * 45.00901 * 11 10 7 33 33 H 1.09005 * 109.46832 * 300.00821 * 12 11 10 34 34 H 1.09002 * 109.46398 * 60.00446 * 12 11 10 35 35 H 0.97002 * 120.00449 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 37 37 H 1.09001 * 109.46938 * 59.99709 * 23 22 21 38 38 H 1.09004 * 109.46926 * 299.99830 * 23 22 21 39 39 H 1.08003 * 120.05589 * 0.03821 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3753 0.0005 5 6 1.9173 3.6064 0.0011 6 6 3.2972 3.6820 0.0063 7 16 4.0927 5.2541 0.0138 8 8 5.0789 5.2097 -1.0083 9 8 3.0579 6.2273 0.0536 10 7 4.9110 5.3828 1.4478 11 6 6.0312 4.4836 1.7351 12 6 6.8368 5.0329 2.9142 13 6 7.9895 4.1083 3.2093 14 1 8.1335 3.2180 2.6151 15 6 8.8604 4.3988 4.2380 16 7 9.8666 3.5921 4.4953 17 14 8.6118 5.9390 5.2653 18 1 7.7388 5.6251 6.4249 19 1 9.9270 6.4261 5.7535 20 1 7.9720 6.9904 4.4343 21 6 4.0568 2.5209 0.0004 22 8 5.4136 2.5958 0.0009 23 6 6.1317 1.3603 0.0007 24 6 3.4302 1.2839 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2121 2.3188 0.0014 29 1 1.3278 4.5114 0.0019 30 1 4.6485 6.0535 2.0975 31 1 5.6482 3.4945 1.9861 32 1 6.6742 4.4123 0.8576 33 1 7.2199 6.0221 2.6630 34 1 6.1939 5.1042 3.7915 35 1 10.4796 3.7966 5.2188 36 1 7.2028 1.5625 0.0007 37 1 5.8702 0.7882 -0.8895 38 1 5.8697 0.7877 0.8905 39 1 4.0197 0.3790 -0.0016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258962236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:16 Heat of formation + Delta-G solvation = -148.734653 kcal Electronic energy + Delta-G solvation = -24858.514427 eV Core-core repulsion = 21086.234329 eV Total energy + Delta-G solvation = -3772.280098 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68784 -40.20968 -38.29476 -37.60077 -37.00286 -36.87382 -34.66616 -32.11351 -31.50307 -31.21568 -28.30161 -28.24600 -26.34468 -24.13528 -23.26051 -22.63743 -20.59827 -20.03605 -19.10739 -18.62805 -18.23107 -17.90028 -17.41638 -17.23633 -16.78394 -16.48348 -16.20697 -16.03539 -15.57787 -15.46663 -15.42014 -14.58914 -14.37632 -14.25723 -13.83171 -13.48574 -13.39274 -13.30145 -13.20962 -13.12642 -13.02082 -12.75893 -12.53860 -12.24702 -12.16489 -11.93333 -11.84387 -11.74026 -11.65680 -11.38678 -10.73811 -10.31398 -9.87691 -9.54293 -8.25076 -6.28674 -0.53948 -0.18288 0.19650 1.39399 1.42402 1.53143 1.95163 2.02396 2.24174 2.39264 2.39920 2.74417 3.10791 3.34724 3.64729 3.92670 4.02416 4.11552 4.29746 4.33856 4.35788 4.36545 4.38298 4.44111 4.57793 4.67944 4.72522 4.74082 4.78154 4.94403 4.97297 5.06785 5.35108 5.45155 5.50630 5.66517 6.00326 6.15256 6.21022 6.33209 6.78106 7.35235 8.90686 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.004241 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.793534 B = 6601.304155 C = 7427.242712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.215 3.785 4 C -0.258 4.258 5 C 0.046 3.954 6 C -0.758 4.758 7 S 2.719 3.281 8 O -0.987 6.987 9 O -0.984 6.984 10 N -1.112 6.112 11 C 0.149 3.851 12 C -0.020 4.020 13 C -0.526 4.526 14 H 0.045 0.955 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.943 3.057 18 H -0.266 1.266 19 H -0.288 1.288 20 H -0.247 1.247 21 C 0.247 3.753 22 O -0.320 6.320 23 C 0.015 3.985 24 C -0.274 4.274 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.072 0.928 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.423 0.577 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.534 -5.982 -8.744 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.167 3.833 4 C -0.277 4.277 5 C 0.027 3.973 6 C -0.848 4.848 7 S 2.811 3.189 8 O -0.977 6.977 9 O -0.975 6.975 10 N -0.873 5.873 11 C 0.024 3.976 12 C -0.059 4.059 13 C -0.565 4.565 14 H 0.063 0.937 15 C -0.188 4.188 16 N -0.588 5.588 17 Si 0.767 3.233 18 H -0.191 1.191 19 H -0.214 1.214 20 H -0.171 1.171 21 C 0.197 3.803 22 O -0.231 6.231 23 C -0.078 4.078 24 C -0.294 4.294 25 H 0.093 0.907 26 H 0.142 0.858 27 H 0.091 0.909 28 H 0.191 0.809 29 H 0.186 0.814 30 H 0.258 0.742 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.138 -5.575 -9.440 23.812 hybrid contribution 0.156 -0.223 1.133 1.165 sum -20.982 -5.798 -8.307 23.299 Atomic orbital electron populations 1.23555 0.75258 1.06312 1.03176 1.86099 1.24528 1.26056 1.86714 1.19050 0.91540 0.85241 0.87483 1.21567 1.02144 0.90876 1.13153 1.20859 0.90445 0.99915 0.86103 1.29848 1.05100 1.18878 1.30961 1.00717 0.72357 0.73295 0.72533 1.93539 1.60395 1.87206 1.56559 1.93508 1.58190 1.58867 1.86927 1.55321 1.45520 1.47773 1.38710 1.21132 0.86074 0.91541 0.98868 1.19756 0.94795 0.96692 0.94677 1.21268 1.10484 1.08895 1.15806 0.93652 1.25884 0.94502 0.99894 0.98499 1.70036 1.16958 1.39658 1.32099 0.85763 0.77740 0.80418 0.79389 1.19059 1.21355 1.17052 1.18217 0.82915 0.92610 0.86508 1.86306 1.14660 1.35915 1.86249 1.23462 0.97363 0.83841 1.03152 1.20618 0.93753 0.97603 1.17395 0.90713 0.85778 0.90904 0.80914 0.81447 0.74167 0.91898 0.91708 0.95635 0.95026 0.92548 0.87226 0.89881 0.90892 0.82477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -5.76 10.49 -92.33 -0.97 -6.73 16 3 C 0.21 4.62 6.68 22.49 0.15 4.77 16 4 C -0.26 -4.85 9.04 22.38 0.20 -4.64 16 5 C 0.05 1.06 9.54 22.24 0.21 1.27 16 6 C -0.76 -22.09 5.90 22.38 0.13 -21.95 16 7 S 2.72 89.94 5.46 -56.49 -0.31 89.63 16 8 O -0.99 -39.54 16.76 -122.88 -2.06 -41.60 16 9 O -0.98 -32.91 16.96 -128.00 -2.17 -35.08 16 10 N -1.11 -37.10 6.00 -187.48 -1.12 -38.22 16 11 C 0.15 5.92 4.44 86.38 0.38 6.30 16 12 C -0.02 -0.92 4.18 29.85 0.12 -0.79 16 13 C -0.53 -29.16 9.66 25.60 0.25 -28.92 16 14 H 0.05 2.71 7.99 -2.91 -0.02 2.68 16 15 C 0.01 0.54 5.47 84.66 0.46 1.00 16 16 N -0.95 -57.81 13.96 21.45 0.30 -57.51 16 17 Si 0.94 43.20 27.47 68.60 1.88 45.09 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 21 C 0.25 7.29 6.31 22.49 0.14 7.43 16 22 O -0.32 -10.21 5.54 -82.90 -0.46 -10.67 16 23 C 0.02 0.38 9.81 113.37 1.11 1.49 16 24 C -0.27 -6.81 8.97 22.46 0.20 -6.61 16 25 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 26 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 28 H 0.17 1.87 6.29 -2.91 -0.02 1.85 16 29 H 0.17 3.17 7.33 -2.91 -0.02 3.14 16 30 H 0.42 12.16 8.65 -96.75 -0.84 11.32 16 31 H 0.06 2.41 6.64 -2.39 -0.02 2.40 16 32 H 0.06 2.75 7.13 -2.38 -0.02 2.73 16 33 H 0.03 1.15 7.20 -2.38 -0.02 1.14 16 34 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.08 1.60 7.66 -2.39 -0.02 1.58 16 38 H 0.07 1.65 7.66 -2.38 -0.02 1.63 16 39 H 0.16 3.35 6.30 -2.91 -0.02 3.34 16 Total: -1.00 -75.79 333.56 -0.23 -76.02 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.20 Total: 18.52 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 4.48 Total: -39.45 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -0.83 Total: -95.73 kcal Atomic # 8 Polarization: -88.42 SS G_CDS: -5.66 Total: -94.08 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.09 kcal Atomic # 16 Polarization: 89.94 SS G_CDS: -0.31 Total: 89.63 kcal Total: -75.79 -0.23 -76.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258962236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.717 kcal (2) G-P(sol) polarization free energy of solvation -75.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds