Wall clock time and date at job start Tue Mar 31 2020 10:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39895 * 109.46973 * 2 1 4 4 F 1.39901 * 109.47305 * 239.99983 * 2 1 3 5 5 C 1.52996 * 109.47124 * 119.99866 * 2 1 3 6 6 C 1.53007 * 109.47000 * 179.97438 * 5 2 1 7 7 N 1.46498 * 109.46662 * 180.02562 * 6 5 2 8 8 C 1.34783 * 119.99450 * 180.02562 * 7 6 5 9 9 O 1.21606 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.47433 * 119.99777 * 179.97438 * 8 7 6 11 11 C 1.39678 * 120.21285 * 359.97438 * 10 8 7 12 12 C 1.37809 * 119.93418 * 180.02562 * 11 10 8 13 13 C 1.38660 * 120.38295 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43889 * 0.02562 * 13 12 11 15 15 C 1.39110 * 120.04977 * 359.97438 * 14 13 12 16 16 S 1.76195 * 120.19106 * 180.02562 * 15 14 13 17 17 C 1.76205 * 99.99901 * 6.85682 * 16 15 14 18 18 H 1.08005 * 119.99976 * 5.65159 * 17 16 15 19 19 C 1.38804 * 120.00248 * 185.65626 * 17 16 15 20 20 N 1.31558 * 119.99610 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00279 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47334 * 89.99556 * 21 19 17 23 23 H 1.48501 * 109.47313 * 210.00161 * 21 19 17 24 24 H 1.48500 * 109.46994 * 329.99936 * 21 19 17 25 25 H 1.08995 * 109.47286 * 299.99699 * 1 2 3 26 26 H 1.09003 * 109.47172 * 60.00400 * 1 2 3 27 27 H 1.09005 * 109.46831 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47151 * 60.00337 * 5 2 1 29 29 H 1.08995 * 109.47394 * 300.00369 * 5 2 1 30 30 H 1.09000 * 109.47129 * 60.00596 * 6 5 2 31 31 H 1.09003 * 109.47146 * 300.00209 * 6 5 2 32 32 H 0.97003 * 120.00826 * 359.97438 * 7 6 5 33 33 H 1.07994 * 120.03669 * 0.27820 * 11 10 8 34 34 H 1.08006 * 119.80802 * 179.97438 * 12 11 10 35 35 H 1.08007 * 119.77539 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.97290 * 179.97438 * 14 13 12 37 37 H 0.96997 * 119.99773 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5700 -0.7217 1.2489 7 7 4.0583 -1.4129 2.4448 8 6 5.3834 -1.5361 2.6580 9 8 6.1737 -1.0732 1.8579 10 6 5.8749 -2.2311 3.8617 11 6 4.9712 -2.7631 4.7844 12 6 5.4368 -3.4111 5.9079 13 6 6.7996 -3.5387 6.1297 14 6 7.7057 -3.0185 5.2295 15 6 7.2556 -2.3608 4.0893 16 16 8.4099 -1.6953 2.9365 17 6 9.9121 -2.3230 3.6106 18 1 9.8848 -3.0064 4.4465 19 6 11.1304 -1.9390 3.0675 20 7 11.1635 -1.1069 2.0491 21 14 12.7228 -2.6050 3.7817 22 1 13.0902 -3.8633 3.0839 23 1 13.8041 -1.6037 3.5991 24 1 12.5399 -2.8774 5.2300 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 -1.7489 1.2492 29 1 1.6766 -0.2074 2.1392 30 1 3.9337 0.3058 1.2487 31 1 3.9330 -1.2358 0.3588 32 1 3.4280 -1.7812 3.0835 33 1 3.9086 -2.6702 4.6155 34 1 4.7362 -3.8213 6.6202 35 1 7.1538 -4.0489 7.0133 36 1 8.7655 -3.1218 5.4100 37 1 12.0149 -0.8383 1.6698 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324560310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:13 Heat of formation + Delta-G solvation = -118.558261 kcal Electronic energy + Delta-G solvation = -23062.415016 eV Core-core repulsion = 19180.355949 eV Total energy + Delta-G solvation = -3882.059067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.16719 -47.14073 -39.51117 -37.53184 -35.47038 -33.02286 -32.75222 -30.90422 -30.28330 -29.15819 -25.82570 -24.50744 -22.67986 -21.96435 -21.66209 -20.14500 -18.27329 -17.85829 -17.25568 -16.85509 -16.35863 -15.72982 -15.38400 -15.36529 -15.13206 -14.41876 -14.15180 -13.89904 -13.71737 -13.62916 -13.46265 -13.44269 -12.99408 -12.92502 -12.81236 -12.51969 -12.12479 -12.01280 -11.59655 -11.54676 -11.22861 -11.19540 -11.15859 -10.93046 -10.32601 -9.82566 -9.66128 -9.50255 -8.83676 -8.73707 -8.34728 -8.07051 -6.54104 -6.45805 -4.16725 1.52042 2.00718 3.10644 3.13239 3.18702 3.20064 3.42547 3.50582 3.63547 3.88285 4.05856 4.09603 4.16876 4.47724 4.76825 4.77201 4.95136 5.02582 5.12404 5.23875 5.29758 5.29804 5.38287 5.41842 5.58845 5.78064 5.82878 5.99694 6.10483 6.37544 6.58016 6.67062 6.83258 7.01517 7.12394 7.44486 7.58368 7.84961 8.16268 8.76423 9.00207 10.57464 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.003250 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.417187 B = 8612.719584 C =10002.123555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.292 3.708 3 F -0.198 7.198 4 F -0.198 7.198 5 C -0.174 4.174 6 C 0.119 3.881 7 N -0.739 5.739 8 C 0.552 3.448 9 O -0.506 6.506 10 C -0.178 4.178 11 C -0.061 4.061 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.057 4.057 16 S 0.186 5.814 17 C -0.596 4.596 18 H 0.091 0.909 19 C 0.083 3.917 20 N -0.857 5.857 21 Si 0.920 3.080 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.268 1.268 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.395 0.605 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.931 -0.920 1.696 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.255 3.745 3 F -0.179 7.179 4 F -0.179 7.179 5 C -0.212 4.212 6 C -0.005 4.005 7 N -0.394 5.394 8 C 0.341 3.659 9 O -0.382 6.382 10 C -0.193 4.193 11 C -0.081 4.081 12 C -0.212 4.212 13 C -0.099 4.099 14 C -0.178 4.178 15 C -0.177 4.177 16 S 0.451 5.549 17 C -0.743 4.743 18 H 0.109 0.891 19 C -0.128 4.128 20 N -0.490 5.490 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.230 0.770 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.010 0.391 -0.313 20.016 hybrid contribution 0.839 -1.332 1.844 2.424 sum -19.171 -0.941 1.531 19.255 Atomic orbital electron populations 1.22772 0.91421 1.05477 1.05457 1.20977 0.93684 0.75869 0.83989 1.93039 1.90544 1.37487 1.96850 1.93041 1.90541 1.80870 1.53467 1.22843 0.97842 1.03199 0.97351 1.21154 0.90957 0.98940 0.89422 1.45741 1.07376 1.60986 1.25278 1.18327 0.81503 0.79949 0.86117 1.90799 1.53949 1.47234 1.46247 1.19079 0.92638 1.09920 0.97698 1.20874 0.97288 0.96171 0.93778 1.20628 0.95366 1.05982 0.99236 1.21088 0.93300 0.97460 0.98040 1.21440 1.00827 1.01118 0.94394 1.23093 0.97190 0.98139 0.99282 1.84793 0.92949 1.53173 1.23962 1.24061 0.94224 1.33399 1.22615 0.89125 1.25106 0.99520 0.93871 0.94281 1.69979 1.27660 1.30018 1.21310 0.86140 0.80802 0.78884 0.79675 1.19857 1.20465 1.19238 0.89178 0.89919 0.89182 0.88109 0.88104 0.90736 0.90737 0.77048 0.87227 0.87079 0.87007 0.84346 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.03 9.38 37.16 0.35 -0.68 16 2 C 0.29 2.61 2.11 -26.73 -0.06 2.55 16 3 F -0.20 -2.27 16.54 2.25 0.04 -2.23 16 4 F -0.20 -2.27 16.54 2.25 0.04 -2.23 16 5 C -0.17 -1.39 4.92 -26.73 -0.13 -1.52 16 6 C 0.12 1.53 5.43 -4.04 -0.02 1.50 16 7 N -0.74 -10.26 5.51 -61.38 -0.34 -10.60 16 8 C 0.55 10.75 7.75 -12.51 -0.10 10.65 16 9 O -0.51 -12.06 13.77 5.27 0.07 -11.99 16 10 C -0.18 -3.50 5.89 -104.75 -0.62 -4.12 16 11 C -0.06 -0.94 9.53 -39.20 -0.37 -1.31 16 12 C -0.19 -2.82 10.02 -39.58 -0.40 -3.22 16 13 C -0.08 -1.30 10.03 -39.55 -0.40 -1.69 16 14 C -0.15 -3.18 9.22 -39.38 -0.36 -3.55 16 15 C -0.06 -1.30 6.14 -38.39 -0.24 -1.54 16 16 S 0.19 5.04 18.56 -107.50 -2.00 3.05 16 17 C -0.60 -16.52 9.00 30.94 0.28 -16.24 16 18 H 0.09 2.37 4.98 -52.48 -0.26 2.11 16 19 C 0.08 2.29 5.49 -17.46 -0.10 2.20 16 20 N -0.86 -24.88 13.22 55.49 0.73 -24.15 16 21 Si 0.92 20.75 29.55 -169.99 -5.02 15.73 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.08 7.80 -51.93 -0.41 0.68 16 31 H 0.07 1.08 7.80 -51.93 -0.41 0.68 16 32 H 0.39 4.07 6.50 -40.82 -0.27 3.80 16 33 H 0.11 1.22 6.40 -52.49 -0.34 0.89 16 34 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.14 3.01 5.04 -52.49 -0.26 2.75 16 37 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -33.43 333.60 -7.64 -41.07 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.03 Total: 3.29 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.16 Total: -16.96 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.40 Total: -34.75 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.46 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -2.00 Total: 3.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.43 -7.64 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324560310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.491 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds