Wall clock time and date at job start Tue Mar 31 2020 11:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47364 * 2 1 4 4 C 1.52994 * 109.47122 * 239.99988 * 2 1 3 5 5 C 1.50700 * 109.47351 * 63.26150 * 4 2 1 6 6 H 1.08000 * 120.00053 * 4.87458 * 5 4 2 7 7 C 1.37878 * 120.00357 * 184.87749 * 5 4 2 8 8 N 1.31516 * 119.99596 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00195 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46723 * 90.00055 * 9 7 5 11 11 H 1.48497 * 109.47104 * 210.00045 * 9 7 5 12 12 H 1.48501 * 109.47104 * 330.00215 * 9 7 5 13 13 N 1.46905 * 109.47193 * 120.00038 * 2 1 3 14 14 C 1.47007 * 111.00095 * 174.13418 * 13 2 1 15 15 C 1.53093 * 109.26095 * 182.39206 * 14 13 2 16 16 O 1.43019 * 109.25879 * 303.15119 * 15 14 13 17 17 C 1.43019 * 113.73540 * 58.66378 * 16 15 14 18 18 H 1.09005 * 109.54018 * 61.29267 * 17 16 15 19 19 C 1.50703 * 109.50438 * 181.39378 * 17 16 15 20 20 C 1.33352 * 125.18874 * 219.78389 * 19 17 16 21 21 C 1.38468 * 114.92670 * 179.97438 * 20 19 17 22 22 C 1.33506 * 114.88780 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 125.21007 * 180.02562 * 22 21 20 24 24 S 1.75881 * 125.18665 * 39.48582 * 19 17 16 25 25 C 1.47020 * 110.99703 * 297.76908 * 13 2 1 26 26 H 1.09002 * 109.47364 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47211 * 60.00257 * 1 2 3 28 28 H 1.08998 * 109.47236 * 300.00265 * 1 2 3 29 29 H 1.08997 * 109.47416 * 183.26602 * 4 2 1 30 30 H 1.09008 * 109.47293 * 303.26444 * 4 2 1 31 31 H 0.97009 * 119.99657 * 179.97438 * 8 7 5 32 32 H 1.09008 * 109.50740 * 302.32823 * 14 13 2 33 33 H 1.09001 * 109.50578 * 62.45333 * 14 13 2 34 34 H 1.08999 * 109.50728 * 183.21743 * 15 14 13 35 35 H 1.08996 * 109.50899 * 63.08039 * 15 14 13 36 36 H 1.07997 * 122.53450 * 359.96074 * 20 19 17 37 37 H 1.08006 * 122.55942 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.50314 * 297.53887 * 25 13 2 39 39 H 1.08999 * 109.50847 * 57.62911 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6047 0.0343 -2.4784 6 1 1.0911 0.9790 -2.3779 7 6 1.8623 -0.4805 -3.7313 8 7 2.4882 -1.6307 -3.8536 9 14 1.3221 0.4557 -5.2548 10 1 2.4076 1.3748 -5.6817 11 1 1.0287 -0.5054 -6.3482 12 1 0.1008 1.2419 -4.9457 13 7 2.0197 -0.6925 1.1995 14 6 3.4825 -0.8348 1.1654 15 6 3.9432 -1.6122 2.4012 16 8 3.4922 -0.9369 3.5785 17 6 2.0720 -0.7814 3.6446 18 1 1.5979 -1.7629 3.6556 19 6 1.7058 -0.0318 4.8997 20 6 0.6590 -0.3040 5.6796 21 6 0.5229 0.5215 6.7829 22 6 1.4604 1.4650 6.8977 23 17 1.5479 2.6392 8.1734 24 16 2.5982 1.3309 5.5631 25 6 1.5924 0.0043 2.4215 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 3.1284 -0.7722 -1.2204 30 1 1.6296 -1.7307 -1.2790 31 1 2.6691 -1.9930 -4.7351 32 1 3.7747 -1.3758 0.2652 33 1 3.9442 0.1526 1.1634 34 1 5.0316 -1.6706 2.4095 35 1 3.5241 -2.6180 2.3756 36 1 -0.0306 -1.1075 5.4667 37 1 -0.2805 0.4106 7.4963 38 1 2.0240 1.0050 2.4395 39 1 0.5049 0.0766 2.4379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331330385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:55 Heat of formation + Delta-G solvation = -13.924083 kcal Electronic energy + Delta-G solvation = -21721.024251 eV Core-core repulsion = 18395.299143 eV Total energy + Delta-G solvation = -3325.725108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.75545 -38.10950 -36.85145 -36.34785 -33.11026 -32.27438 -31.05995 -28.92104 -26.98572 -26.15186 -24.68968 -23.13243 -22.70208 -20.70230 -19.82274 -19.09654 -17.89020 -16.73742 -16.25499 -15.82391 -15.63587 -14.81291 -14.78320 -14.43121 -14.21203 -13.78893 -13.70953 -13.54470 -13.08877 -12.92783 -12.53746 -12.11293 -11.90892 -11.68166 -11.60164 -11.35611 -11.31285 -11.14451 -10.93084 -10.85843 -10.84161 -10.48724 -10.29602 -9.92640 -9.63828 -9.28519 -9.13610 -8.74518 -8.69986 -8.38147 -7.88372 -6.04706 -4.06362 0.56249 0.89880 1.67502 2.01187 2.34708 3.28739 3.35562 3.38202 3.65391 4.15873 4.44815 4.76042 4.93132 5.04376 5.15712 5.19399 5.28624 5.31347 5.45664 5.53642 5.64859 5.68840 5.86142 5.88514 5.92707 6.04692 6.08098 6.19831 6.25973 6.28360 6.61617 6.82383 7.05121 7.12345 7.38552 7.45850 7.67704 7.79209 7.99372 8.37562 8.99302 9.57109 11.06628 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.026842 B = 0.002753 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.877034 B =10166.555147 C =10607.157416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.086 3.914 3 H 0.028 0.972 4 C 0.030 3.970 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.531 5.531 14 C 0.013 3.987 15 C 0.067 3.933 16 O -0.384 6.384 17 C 0.164 3.836 18 H 0.088 0.912 19 C -0.158 4.158 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.163 4.163 23 Cl -0.020 7.020 24 S 0.190 5.810 25 C 0.027 3.973 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.016 0.984 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.104 0.896 33 H 0.037 0.963 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.037 0.963 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 3.089 21.628 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.021 4.021 3 H 0.046 0.954 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.257 5.257 14 C -0.115 4.115 15 C -0.010 4.010 16 O -0.304 6.304 17 C 0.104 3.896 18 H 0.106 0.894 19 C -0.277 4.277 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.307 4.307 23 Cl 0.008 6.992 24 S 0.454 5.546 25 C -0.102 4.102 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.055 0.945 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.055 0.945 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.051 3.477 21.333 21.614 hybrid contribution -1.347 0.576 -0.581 1.576 sum -1.398 4.053 20.752 21.190 Atomic orbital electron populations 1.21745 0.95069 1.01703 1.00177 1.21872 0.95224 0.95294 0.89688 0.95404 1.19215 0.95965 0.96346 0.89153 1.21162 1.37583 1.06109 0.90785 0.92672 1.24980 0.95267 0.94960 0.99058 1.69963 1.41410 1.18396 1.23470 0.86615 0.79014 0.79654 0.82852 1.20736 1.21209 1.19877 1.62344 1.10380 1.51014 1.01923 1.22863 0.88789 1.00107 0.99731 1.22758 0.99452 0.95437 0.83339 1.87943 1.20357 1.79367 1.42708 1.20400 0.82963 0.97397 0.88831 0.89416 1.24411 1.00513 1.01361 1.01415 1.19889 0.99413 1.02229 0.94239 1.20119 0.99980 0.95086 0.99740 1.25426 1.04546 1.01126 0.99588 1.98359 1.97812 1.55567 1.47458 1.84656 1.26035 1.28286 1.15628 1.22773 1.01770 0.95579 0.90095 0.92559 0.91306 0.95043 0.96636 0.95250 0.92979 0.87802 0.94458 0.88357 0.92042 0.83196 0.83409 0.94457 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.82 37.16 0.33 -2.08 16 2 C 0.09 1.74 2.11 -67.71 -0.14 1.59 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.03 0.75 4.16 -27.89 -0.12 0.63 16 5 C -0.52 -14.04 8.30 -34.44 -0.29 -14.32 16 6 H 0.06 1.46 7.13 -52.49 -0.37 1.09 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.53 -9.23 4.59 -226.34 -1.04 -10.27 16 14 C 0.01 0.22 5.19 -3.72 -0.02 0.20 16 15 C 0.07 0.90 7.01 37.21 0.26 1.16 16 16 O -0.38 -5.46 10.27 -35.23 -0.36 -5.83 16 17 C 0.16 2.16 3.24 -27.84 -0.09 2.06 16 18 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 19 C -0.16 -1.87 5.49 -36.01 -0.20 -2.07 16 20 C -0.13 -1.28 10.04 -41.20 -0.41 -1.69 16 21 C -0.12 -1.12 10.13 -41.15 -0.42 -1.53 16 22 C -0.16 -1.72 7.10 29.08 0.21 -1.51 16 23 Cl -0.02 -0.20 29.29 -51.86 -1.52 -1.71 16 24 S 0.19 2.21 23.11 -107.50 -2.48 -0.28 16 25 C 0.03 0.40 4.65 -3.71 -0.02 0.38 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.36 6.93 -51.93 -0.36 1.00 16 28 H 0.03 0.49 6.40 -51.93 -0.33 0.16 16 29 H 0.02 0.40 6.08 -51.93 -0.32 0.09 16 30 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.10 1.88 6.01 -51.92 -0.31 1.57 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.26 6.24 -51.93 -0.32 0.94 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -28.94 341.43 -10.93 -39.87 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.38 Total: -2.12 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.00 Total: -15.64 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.30 Total: -35.62 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.36 Total: -5.83 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.48 Total: -0.28 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.94 -10.93 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331330385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.942 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds